mRNA_H-paniculata_contig2391.6465.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2391.6465.1 vs. uniprot
Match: A0A6H5KA79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA79_9PHAE) HSP 1 Score: 200 bits (509), Expect = 8.600e-48 Identity = 141/278 (50.72%), Postives = 161/278 (57.91%), Query Frame = 2
Query: 3353 LAETGSAAEDLSKEQLEVTRELSTERDELYEENQRYNERLGELTSALREVREEKARLENQVFDRERGLEALRARADVERFKVARLQTEVEKAQVVCREMTDRLVELQEAQTELGNARDSLAKAXXXXXAXXXXXXXXXXXXXXXCRTRGDLENARRATSEMSARAAEAEGRAEXXXXXXXXXXXXXXALQHELDQVPKDLLVAHAEKRVLQGALDHA-------EASAEAEIRRRDADIRSFASAAALEQERYGKRLREQALTIHQLTLQGFSVEAQA 4165
LAE GS AE LSKEQLE+TR+LS ERDEL EEN+R + RL +LT+AL+E REEK RL NQ+ DRERGLEALRA++DVER K ARLQ EV KAQ VCREM+ RL+ELQ Q EL + R L +A RA AE AE ALQ +LD+VP DLLVAHAEKRVLQGAL+ A EA+ AE+RRRD RLREQALTIHQLTL+GFS EA A
Sbjct: 1463 LAEAGSEAEALSKEQLEITRQLSAERDELVEENERLSTRLDQLTTALQEQREEKGRLTNQLLDRERGLEALRAQSDVERVKAARLQEEVGKAQEVCREMSGRLLELQATQDELRDTRQGLDQASKDLETLRRSKDNLAGGWDEAAXXXXXXXXXXXXXXXXXXRANAAEPLAEEESRRARHLEARVNALQRQLDEVPNDLLVAHAEKRVLQGALERAKSDAADVEAATAAELRRRDXXXXXXXXXXXXXXXXXXXRLREQALTIHQLTLEGFSAEAAA 1740
BLAST of mRNA_H-paniculata_contig2391.6465.1 vs. uniprot
Match: D7FYF0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYF0_ECTSI) HSP 1 Score: 186 bits (471), Expect = 2.420e-43 Identity = 160/279 (57.35%), Postives = 183/279 (65.59%), Query Frame = 2
Query: 3323 VEALESALDRLAETGSAAEDLSKEQLEVTRELSTERDELYEENQRYNERLGELTSALREVREEKARLENQVFDRERGLEALRARADVERFKVARLQTEVEKAQVVCREMTDRLVELQEAQTELGNARDSLAKAXXXXXAXXXXXXXXXXXXXXXCRTRGDLENARRATSEMSARAAEAEGRAEXXXXXXXXXXXXXXALQHELDQVPKDLLVAHAEKRVLQGALDHAEASAEAEIRRRDADIRSFASAAALEQERYGKRLREQALTIHQLTLQGFSVEA 4159
VEALE+AL++LAE GS AE LSKEQLE+TR+LS ERDEL EEN+R + RL +LT+AL+E REEK RL NQ+ DRERGLEALRA+ DVER K ARLQ EV KAQ VCREM+DRL+ELQ Q EL + R L +AXXXXX XXXXXXXXXXXXXXX XXXXXX ALQ +LD EA+ AE+RRRDAD R+ ASAAAL+Q R +RLREQALTIHQLTL+GFS EA
Sbjct: 1370 VEALEAALEKLAEAGSEAEALSKEQLEITRQLSAERDELVEENERSSTRLDQLTTALQEQREEKGRLTNQLLDRERGLEALRAQGDVERVKAARLQEEVGKAQEVCREMSDRLLELQATQDELRDTRQGLDQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHLEARVNALQRQLD-----------------------EAATAAELRRRDADARNMASAAALQQRRCDERLREQALTIHQLTLEGFSAEA 1625 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2391.6465.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2391.6465.1 >prot_H-paniculata_contig2391.6465.1 ID=prot_H-paniculata_contig2391.6465.1|Name=mRNA_H-paniculata_contig2391.6465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1577bp MAGAASEKLEAQLKEASAENDQLAAAAAREKKMLQSQWLRREDAWRLALQback to top mRNA from alignment at H-paniculata_contig2391:1735..18624- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2391.6465.1 ID=mRNA_H-paniculata_contig2391.6465.1|Name=mRNA_H-paniculata_contig2391.6465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16890bp|location=Sequence derived from alignment at H-paniculata_contig2391:1735..18624- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2391:1735..18624- >mRNA_H-paniculata_contig2391.6465.1 ID=mRNA_H-paniculata_contig2391.6465.1|Name=mRNA_H-paniculata_contig2391.6465.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=9462bp|location=Sequence derived from alignment at H-paniculata_contig2391:1735..18624- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |