mRNA_H-paniculata_contig239.6462.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig239.6462.1 vs. uniprot
Match: D7FHM1_ECTSI (TiTiN family member (Ttn-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM1_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 3.340e-9 Identity = 47/97 (48.45%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 1537 RIKEKLAFERAEFRRYREKTDAQLKRLRKEAERAEELEEQLDKKSLKIKQKEAEVRALAVDGKEIRELRQSVSLKEDHLKNLRLEMASLRIATEAAE 1827
R + LA ER +F + ++A++K LR A RA++LE+QL KSL++KQKEAE R LA DGK +R LR+S++ K++ L LR E+ +LR+A+ AAE
Sbjct: 838 RAEASLAAERQKFSAAKRASEAKIKLLRAAAGRADDLEDQLSAKSLRLKQKEAEARVLATDGKVVRGLRESLTCKDNALNELRQELGNLRVASAAAE 934 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig239.6462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig239.6462.1 >prot_H-paniculata_contig239.6462.1 ID=prot_H-paniculata_contig239.6462.1|Name=mRNA_H-paniculata_contig239.6462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=767bp MVLPSAHGPAVVAMAEAEDNNFPLPVIDSDDPLDFFGAIRELVERGLTVEback to top mRNA from alignment at H-paniculata_contig239:22270..37653- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig239.6462.1 ID=mRNA_H-paniculata_contig239.6462.1|Name=mRNA_H-paniculata_contig239.6462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=15384bp|location=Sequence derived from alignment at H-paniculata_contig239:22270..37653- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig239:22270..37653- >mRNA_H-paniculata_contig239.6462.1 ID=mRNA_H-paniculata_contig239.6462.1|Name=mRNA_H-paniculata_contig239.6462.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4602bp|location=Sequence derived from alignment at H-paniculata_contig239:22270..37653- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |