mRNA_H-paniculata_contig2389.6458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2389.6458.1
Unique NamemRNA_H-paniculata_contig2389.6458.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2389.6458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2389contigH-paniculata_contig2389:14404..14869 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size466
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2389.6458.1prot_H-paniculata_contig2389.6458.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2389 14498..14809 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929682.1321821-UTR-H-paniculata_contig2389:14403..144971622929682.1321821-UTR-H-paniculata_contig2389:14403..14497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2389 14404..14497 +
1691480965.422295-UTR-H-paniculata_contig2389:14403..144971691480965.422295-UTR-H-paniculata_contig2389:14403..14497Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2389 14404..14497 +
1622929682.1594832-UTR-H-paniculata_contig2389:14809..148691622929682.1594832-UTR-H-paniculata_contig2389:14809..14869Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2389 14810..14869 +
1691480965.4425468-UTR-H-paniculata_contig2389:14809..148691691480965.4425468-UTR-H-paniculata_contig2389:14809..14869Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2389 14810..14869 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929682.1446543-CDS-H-paniculata_contig2389:14497..148091622929682.1446543-CDS-H-paniculata_contig2389:14497..14809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2389 14498..14809 +
1691480965.4321518-CDS-H-paniculata_contig2389:14497..148091691480965.4321518-CDS-H-paniculata_contig2389:14497..14809Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2389 14498..14809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2389.6458.1

>prot_H-paniculata_contig2389.6458.1 ID=prot_H-paniculata_contig2389.6458.1|Name=mRNA_H-paniculata_contig2389.6458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MRAISWICEENKTDHVPSRVSHSHRNGGMITKGTRPDHDLIPRFSCAMVI
TVTKVLPKAISYGGGFLQIFEFFDSEKLDFPCYAVGFLGNLIPRFLAEIR
VTL*
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mRNA from alignment at H-paniculata_contig2389:14404..14869+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2389.6458.1 ID=mRNA_H-paniculata_contig2389.6458.1|Name=mRNA_H-paniculata_contig2389.6458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=466bp|location=Sequence derived from alignment at H-paniculata_contig2389:14404..14869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTCGAAAGAGGCTCACTCCATCCATAACGACCAACCAACCAACTGACAA
GGAGGAGAGAAACAGGGGGGAGAGCTACGTGATCGACTGCGGGTATGAGA
GCTATATCATGGATCTGCGAAGAAAACAAAACCGATCATGTACCGTCCCG
GGTGAGTCATTCACATCGCAATGGGGGCATGATAACGAAGGGGACACGAC
CGGATCACGACCTAATTCCTCGGTTTTCTTGTGCTATGGTGATAACGGTG
ACTAAAGTTTTGCCTAAGGCCATCTCTTACGGGGGCGGATTTTTACAGAT
TTTCGAATTTTTCGACTCCGAAAAATTAGATTTCCCATGTTATGCGGTTG
GATTTCTTGGAAATCTCATTCCCCGATTTCTGGCAGAAATTAGAGTTACC
CTATGAAGGCGTTAACATTGTTTTTCATCCAACACTTGAAATTTCACAGC
CAGCACAAAGCAATAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2389:14404..14869+

>mRNA_H-paniculata_contig2389.6458.1 ID=mRNA_H-paniculata_contig2389.6458.1|Name=mRNA_H-paniculata_contig2389.6458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig2389:14404..14869+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGCTATATCATGGATCTGCGAAGAAAACAAAACCGATCATGTACC
GTCCCGGGTGAGTCATTCACATCGCAATGGGGGCATGATAACGAAGGGGA
CACGACCGGATCACGACCTAATTCCTCGGTTTTCTTGTGCTATGGTGATA
ACGGTGACTAAAGTTTTGCCTAAGGCCATCTCTTACGGGGGCGGATTTTT
ACAGATTTTCGAATTTTTCGACTCCGAAAAATTAGATTTCCCATGTTATG
CGGTTGGATTTCTTGGAAATCTCATTCCCCGATTTCTGGCAGAAATTAGA
GTTACCCTATGAATGAGAGCTATATCATGGATCTGCGAAGAAAACAAAAC
CGATCATGTACCGTCCCGGGTGAGTCATTCACATCGCAATGGGGGCATGA
TAACGAAGGGGACACGACCGGATCACGACCTAATTCCTCGGTTTTCTTGT
GCTATGGTGATAACGGTGACTAAAGTTTTGCCTAAGGCCATCTCTTACGG
GGGCGGATTTTTACAGATTTTCGAATTTTTCGACTCCGAAAAATTAGATT
TCCCATGTTATGCGGTTGGATTTCTTGGAAATCTCATTCCCCGATTTCTG
GCAGAAATTAGAGTTACCCTATGA
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