mRNA_H-paniculata_contig10997.645.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10997.645.1
Unique NamemRNA_H-paniculata_contig10997.645.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10997.645.1 vs. uniprot
Match: A0A6H5LBF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBF2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 9.740e-21
Identity = 61/115 (53.04%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:    4 HREILMDITDIEGDSSSGIRTLPVLLGREKSLALALMLLTAGVGCALLAIMSSATSTTGARTLAAALCGLFTSPLYNNIARVRGAEFSPDSLSTAVEQALGPLALVLGLMGFALR 348
            HRE+LMDI D+EGD  +G+RTLPVL+GR+ +L  A  LL+ GVG A + I+         R  AAAL  LF  PLY N+  V  + +S + LS+A+EQ LGPLALVLGLMG  LR
Sbjct:  303 HREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSVGVGAAGVGILEGTADPE--RPAAAALSALFVLPLYVNLFLVGRSSYSKERLSSAIEQTLGPLALVLGLMGVVLR 415
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BLAST of mRNA_H-paniculata_contig10997.645.1 vs. uniprot
Match: D8LD89_ECTSI (Prenyltransferase, UbiA family, Putative 4-hydroxybenzoate octaprenyltransferase (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD89_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 6.810e-6
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    4 HREILMDITDIEGDSSSGIRTLPVLLGREKSLALALMLLTAGVGCALLAIMSSAT 168
            HRE+LMDI D+EGD  +G+RTLPVL+GR+ +L  A  LL+AGV  A + I+   T
Sbjct:  185 HREVLMDIADVEGDREAGVRTLPVLMGRQAALVFATALLSAGVVAAGVGILEGTT 239
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10997.645.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LBF2_9PHAE9.740e-2153.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD89_ECTSI6.810e-654.55Prenyltransferase, UbiA family, Putative 4-hydroxy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10997contigH-paniculata_contig10997:312..5044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size2274
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10997.645.1prot_H-paniculata_contig10997.645.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10997 330..3121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928806.18407-UTR-H-paniculata_contig10997:311..3291622928806.18407-UTR-H-paniculata_contig10997:311..329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10997 312..329 +
1691480627.1209078-UTR-H-paniculata_contig10997:311..3291691480627.1209078-UTR-H-paniculata_contig10997:311..329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10997 312..329 +
1622928806.2271302-UTR-H-paniculata_contig10997:3121..50441622928806.2271302-UTR-H-paniculata_contig10997:3121..5044Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10997 3122..5044 +
1691480627.154204-UTR-H-paniculata_contig10997:3121..50441691480627.154204-UTR-H-paniculata_contig10997:3121..5044Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig10997 3122..5044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928806.197188-CDS-H-paniculata_contig10997:329..4741622928806.197188-CDS-H-paniculata_contig10997:329..474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10997 330..474 +
1691480627.1325943-CDS-H-paniculata_contig10997:329..4741691480627.1325943-CDS-H-paniculata_contig10997:329..474Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10997 330..474 +
1622928806.2141056-CDS-H-paniculata_contig10997:2933..31211622928806.2141056-CDS-H-paniculata_contig10997:2933..3121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10997 2934..3121 +
1691480627.144959-CDS-H-paniculata_contig10997:2933..31211691480627.144959-CDS-H-paniculata_contig10997:2933..3121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10997 2934..3121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10997.645.1

>prot_H-paniculata_contig10997.645.1 ID=prot_H-paniculata_contig10997.645.1|Name=mRNA_H-paniculata_contig10997.645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=111bp
MDITDIEGDSSSGIRTLPVLLGREKSLALALMLLTAGVGCALLAIMSSAT
STTGARTLAAALCGLFTSPLYNNIARVRGAEFSPDSLSTAVEQALGPLAL
VLGLMGFALR*
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mRNA from alignment at H-paniculata_contig10997:312..5044+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10997.645.1 ID=mRNA_H-paniculata_contig10997.645.1|Name=mRNA_H-paniculata_contig10997.645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4733bp|location=Sequence derived from alignment at H-paniculata_contig10997:312..5044+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCACATCGCGAGATTCTGATGGACATCACGGACATAGAAGGAGATAGTTC
GTCAGGTATACGGACGCTGCCAGTCCTCCTAGGTCGCGAGAAATCCCTGG
CTCTGGCACTGATGCTGCTCACTGCTGGCGTGGGTTGTGCCCTCTTGGCC
ATTATGTCGTCGGGTAAGGTCTTTTGTTTTAACGTGTAGTGTATTAGTTC
TATGGTATTACTTGAAGGACTTGAGGGCAGATTCGAATCGTGGACGTAGC
TTCTATCAGGATCATATGGTACCCATTGAGCAAGAGGTAGCAAAATATCT
TTGCTCTTATGTACACGGTAGGCGAAAACAAACAAAACAGAAATGGGTCA
ACTTCGTATCGAATGATAAATTGCAATGCTTTACGTTGTCCTTGGGCTGT
GGTCAGTCTCCGCAGAACCTCTAGCGCGTTTGATGTCCGTCTCCGTTCTC
GAGAAGAAATGGAACAATAATGGCGCTTGAAAAACGTTTGCGTTCCCACC
CCGATGCAATCGTAGCAATAGGATACCATTTACACAGTGACTTACTTACC
CCACGGAAGATACATTTTTGCGGCAGGATTCATCCCGTCTGGCACGCCGT
CGAGGCAGCCTGCCTCTCACTGCAGCCCCGCCAGCCCCGCCTCTAAACCT
TGCACCCCCCTGACAAGTAGTACAAATATTTTGAGCATTTACGACGAGAA
AAACCCCCCAAAAAAACACTTGCCTCGGGGTTCAGCATAAGGACAGGTAT
TTTATGTGCCCCTGAGTACACATTTCTGAAAATCGGAACAATATTTTCAA
ATTCTTGTCCCAACTGCTCCCTCGCCGGACAAATTCGAATACGAGACACG
AATTAATACGAGAAATCTGGAAAATGACTACTGTATATGTTTGAGTTGGG
GAAGATCTCCCTGTGACGCGAATAATATGCGGTGTACTCGATATACCATG
GAGCATCGAGAAGCTCGGGCAGATAGAGTATTCAATCTGTACAGTACCAT
CCGGAAATGAAACAGGGACCCGCATGTGTGATGTGTTCGCCGGGTATGCC
AGCATCTGGTGGCTATCTGTAAGGTGACCATTCGTAGATTTGTTACGGAA
TTAATGCGTGTTTGCCCAAGACATATGATGAATGTTCGAGACAGTTGCGA
ATGCTCCATTCGTATTTGTCCCGGGAGTGAATTTTTTTGTACATGTATTA
ATATATATATATATATATATCCTCTCCCGAAATATGAAGGTCGGATCTCT
TCGTACTATATTTGTATGTAATAATGAACATGGGGCAAACACTTGAAGAC
ATTTTCTTCAGAGGGAAAAAATCTTGAAATCTAGAATATAACATGCCAAA
ATGCCTCAAACTCGAAAGTCAACGGGGCCGGTACAGGTAAATTGGCTGAA
AATCAAAGTGACCGGCTTGTGAACAATGACGATAAAAGGCGCACAAAACT
GTTGAATTGTACATTCACGCCCCGTTTGGCATTTGCAGATGAATTCCCAC
ACCGCGTGCCGCCGTTTATCGCGCACGGCCGCATTCCGGTCCTCTTTCCT
GCTATCTGTCGATTTCCCTTTGGCAAAACAATATCCTTTTATCTACTTAG
ACGTAACAGCAGCAGTTACTTTTTTTGCTTTAGTGTGCTAAATTTGCAAT
CTACTTCAGGCATTCCCGTCCCACACTGATTTTCTTACGTTAGTTGATCG
AGTGAGTCGTTGATTTTGATGTTATTTTTGTACGTTATATTTACTTAACC
ATGAAAATGAATAATATGGATCGCTGTTTTATTGCTGGTCACCGCATCAA
AAATGGATCAACCGGCGTGTTGGTCCCTTTTTTTTTTTTTTTAATATATA
TATATATTCATGTTTCATCTATTTCTGTGTTACGTAAATTAGCCCTCATT
GCTTTTTAGTTTTGCTGGTAAATACGCACACACCGCTGTGATACGTCAAC
AACATATGGGCTGCATTACACCAGTATGAGGACAAGAGAAAAAAAAAAGA
GTGTGTTGATTATGTTGTATATCGTAACAGGGTAGAAAGCAGGTCGATCC
ATGAAGGAGGACTCGCAATTCAGATGGGCATATTTGTCAATTGCTCTCTT
TGAGGTTATGTTAGGTCTCACGCCCGGTACGCACGCGAAGTGATACGACT
GTTCTTGGCACTCTATTTGTGAATATAGTATTGATAATAGTCATAGCCCA
CATGCTGTTTTCCTTTCACTTGAAGTTCCGATACTTAATGGTCAACACCA
GGTAGATCAAGAGTGTGGTAGAGTCGTGTACAGTATATATGATGCAATTG
ACCTACTGTATACCCGTGCTAATTTATCATGCGGGGTTACCCAAGAGAAC
TTCAGCTCATTATAATTCAGAAAATGTGGTTACCTGAAATCACCTCTTTT
GCTGCTGCATGATCATTTATATCTAGCCAGGGTTCATCTCTGCTGAACAT
CCTCAGCATGTACACAAATGTTTTGACACAGCCCCCACACTCACCTCCCT
ATTTTGGTCAGCTTGTAGATAAGTAACCCAGCAACTTAAAGATACCCCGC
TCCCCCTCCGCATGTTGTATGTTGCTTGTCCGTCGAATCATGTCACATTC
ACCAATGCTCACGAAATGGCAGCAACTTCGACGACAGGCGCTCGGACCTT
AGCGGCTGCTTTGTGTGGCCTCTTTACGTCACCGCTATACAACAACATCG
CCAGAGTCCGTGGGGCCGAATTTTCTCCAGATAGTCTGTCCACCGCCGTG
GAACAGGCTCTAGGTCCGCTCGCCCTCGTTCTCGGATTGATGGGCTTCGC
TTTGCGATGATGTAGTACGCCGTGAGTTTTCAGGGCGCACTGCAGGGAGG
AAGCCCCACTGTAAGTTCGTTGCGTAGTAGGTAGTGCTTACAGTGCGCGG
CGGCAAATTTCGCCCTTGCAGCAGCGAAAGACTTTACGTGAGTGGTGTTG
CCAACTCTGAGCACATGGAGGTAGAGGGCTTGGTTTATTTCATGCGCCGA
CAAAATGTAGTTGCCTTAGAGATGGATTCCGGGGCTTCGACGTGCAAGGT
GGTCAGCGTTTAAATGGGACTTGTTGGACTGTGTGTGTGTATATATATAC
CTGTGTGCCCATCAACCCCGAGGATTGGTTTGTCCCAGCTGGAATTTTCT
CGTATCCTGACAGGATGTATTATGGGTAGGTCCCCGGGCGCAGTTGTTGG
GGCGAAAAAGAAGAAGCGCCGTCGATAGCTTTCCAACGACCCTATCGTTC
GGCGTTGTGCCTTACTCGTTGTGTTGAGTCAAGAATTGGGGCCGGGGCAC
GCTGCTTTCGTGCCCTGCCTGGACTGTGCCATTGATATGTACTTTTGTGT
ACCTTTGTATATCACGACATGGTGACATGGGCTGAAATTAGAAATTAGGA
TCGACCGAAGGAAGGGAACACGCCATAGAAATACGTAGCCTTTTTGAGGG
GTGTGCTGTGTGTGGCATGTAATTATGAAGAAGCGTAGCAGCGGTGGTAT
TCGATTGCCCTGACGTGCAGGCACACGTGAAATCTCAAGTCTCCATCCTT
CACATCATCACGCAAGTCATACCCGTAGGGAAGAATTTTTCCTTCCTCTG
TCACGGTTGCTTTTGGTGGCACAGATGGGAAGAGCAGAGCGCGATGATGT
TCGTCTCTATAAGAGTGGTGACGTGAGAGGGTGTGTGTATATACTCCGGT
TCCGTCCCTGTCTTTCAGAAGAGGATAGGGGTTATTGATGCGGTATATGA
GAGGTTCCTTTCCTGTGTCTGTACCCGGAGTGCCTACGAAGTACACGCAG
TATGGAGGGCGTGCGGCATGTTGGCAGATTACATCCGCTTCCTCGGCTAC
TTAGTACATATTCCTCGAGACACTCGCTGTATTCATGTACGCAAATTGAT
GTAAAGCTTTTCACCGTTCATGTAGCATAGAGTGGTGCAGATCGCTCACC
GCTGTCGAAGTTTCTACTCAGGCGGTTGATTGGAACACTACTTGGTGTGC
TTGGCGAGAATTATTGCAGTCGCTTTGGCAATATGCTCGCGTGGTTTGTA
TTTATGTTACTGCCTGTTACAAATTTCCCTGCCATCGCTTGTGGGTACGG
AAGACATACATACCAAGAGGTATGCGGACGTCTATGTTTCTACCGGTACT
ACTTGTTGATAAATAAGGTCATCGAAAGTTGGAGGGACACGAAATATAAA
TATGGAGCGTATGGGGAGTGTCCTTGTAGATTTGTGATCGATTTATTTGC
GATGTAGATTCGCGCGTCTAGGATGAAATATGCGACGGACTGGAAACTTT
ATCTGTAGAAGAGAAAAGTGTGTAGGTCGCTGAGCCAAGACTACTTACAC
TGCAAGAAGACCTTTGAGATAGGTTTAGTGAATGAAGGACTTGGCGCGTA
GTGACCGGCTGTTGTGGTGACACGTGTCGACGAAAGGGAAGACTTGCACG
CAGTTCCGCGCTACTATCGGTCGGTCATTTTGTTGGTCTGGTCGGGGACA
GGAAATGGTTGCCTATAGTGTTTTTTTATTTGAGGTAGTTTTTCTGCTGA
GACGTCTTTTATGTTGCCCCAGAGAGTTAGTGGTAGGGATTGAGTGGGTG
ATTCAGCTGAGGAGAGCGAAGATTGCGCAGTGAAAAGTCAGGAAAACAGG
AGTAACGGAAATAAACACCCCAGGCGAAGAGTGACTAAATCATACATAAT
TCGAACGCGTTGTAATTACCGAAGATAGAACGC
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Coding sequence (CDS) from alignment at H-paniculata_contig10997:312..5044+

>mRNA_H-paniculata_contig10997.645.1 ID=mRNA_H-paniculata_contig10997.645.1|Name=mRNA_H-paniculata_contig10997.645.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at H-paniculata_contig10997:312..5044+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACATCACGGACATAGAAGGAGATAGTTCGTCAGGTATACGGACGCT
GCCAGTCCTCCTAGGTCGCGAGAAATCCCTGGCTCTGGCACTGATGCTGC
TCACTGCTGGCGTGGGTTGTGCCCTCTTGGCCATTATGTCGTCGGATGGA
CATCACGGACATAGAAGGAGATAGTTCGTCAGGTATACGGACGCTGCCAG
TCCTCCTAGGTCGCGAGAAATCCCTGGCTCTGGCACTGATGCTGCTCACT
GCTGGCGTGGGTTGTGCCCTCTTGGCCATTATGTCGTCGGCAACTTCGAC
GACAGGCGCTCGGACCTTAGCGGCTGCTTTGTGTGGCCTCTTTACGTCAC
CGCTATACAACAACATCGCCAGAGTCCGTGGGGCCGAATTTTCTCCAGAT
AGTCTGTCCACCGCCGTGGAACAGGCTCTAGGTCCGCTCGCCCTCGTTCT
CGGATTGATGGGCTTCGCTTTGCGATGACAACTTCGACGACAGGCGCTCG
GACCTTAGCGGCTGCTTTGTGTGGCCTCTTTACGTCACCGCTATACAACA
ACATCGCCAGAGTCCGTGGGGCCGAATTTTCTCCAGATAGTCTGTCCACC
GCCGTGGAACAGGCTCTAGGTCCGCTCGCCCTCGTTCTCGGATTGATGGG
CTTCGCTTTGCGATGA
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