mRNA_H-paniculata_contig23834.6443.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23834.6443.1
Unique NamemRNA_H-paniculata_contig23834.6443.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23834.6443.1 vs. uniprot
Match: D7FY72_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY72_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 9.530e-45
Identity = 154/381 (40.42%), Postives = 184/381 (48.29%), Query Frame = 1 
Query:    1 GRSCLSPTNSSVPVLYVFGKGQLDVQDLATTLLSGPL-----APPPLRDLCDGGRGXXXXXXXXXSKESTGAGKETQAAGVDPVLLLYDVTYSHAIPSLLEALGEGYVRGGNGGARLVVGYPTPQAYSP-NGRSSNXXXXXXXXXXXKVAVVDEGTDA------GP------------VVSACRRGEDNEAAGCXXXXXXXXXRQGKDAAKALLSEDYPPAAXXXXXXXXXXTKDSIALSLATMPSLAEQATKNE-------TPSVAD--------------------------------------IRIGGLGVEVESEEALKRYKLFFVGGEGRQLTNVLLRCAGCRDRLRYDPLLPRGERLVAETGRGNRDLMRRYVCV 936
            GR+CLSPTNSSVPVLYVFG+G LDVQ LA+TLLSGPL     A P           XXXXXXXXX                  VLLLYDVTY++AIP+LLE L      GG+   RLVVG+PT +AYSP  G  +                   G+D       GP                C R    E AGC            + A             XXXXXXXXXX     A ++++ PS     T          TPS  +                                      +RIGGLGV++ESEE L+R+KL FVGGEGRQL+NVL+RCAGC DR+RYDP LP GER++ +T +GN+DLMRRY  V
Sbjct:  158 GRACLSPTNSSVPVLYVFGRGDLDVQHLASTLLSGPLSATAAATPGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLLLYDVTYAYAIPALLERLD---AAGGSKRGRLVVGFPTSEAYSPMTGGCAKPAAAGYGCGATSTKGEGGGSDGCGRSDRGPPCTGDSRSAEKETTGECCRRSGGENAGCGTGGRGTGHPSREGALGXXXXXXXXXXXXXXXXXXXXXXXXXPAGAVSSPPSAXXSTTSGGLGNPGQGTPSTPETDTRTPGQSAGAAPGEGGAALSTAGTPAPLSSCQRKRRVRIGGLGVDLESEEELRRHKLVFVGGEGRQLSNVLMRCAGCVDRMRYDPCLPPGERVIGDTRKGNKDLMRRYYLV 535
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BLAST of mRNA_H-paniculata_contig23834.6443.1 vs. uniprot
Match: A0A836CDL8_9STRA (Putative diphthamide biosynthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDL8_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 9.450e-8
Identity = 37/81 (45.68%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:  709 DIRIGGLGVEVESEEALKRYKLFFVGGEGRQLTNVLLRCAGCRDRLRYDPLLPRGE--------RLVAETGRGNRDLMRRY 927
            D+ I GL V+  +E  L++  + ++GGEGR+L+NVL+RCAG   R  YDP  P G         RL  E    NRDLMRRY
Sbjct:  150 DVVIVGLTVQGITEAMLQQCSVLYIGGEGRRLSNVLMRCAGYIGRWSYDPRQPGGSLDGKQRTGRLREEVAGANRDLMRRY 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23834.6443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FY72_ECTSI9.530e-4540.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDL8_9STRA9.450e-845.68Putative diphthamide biosynthesis protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23834contigH-paniculata_contig23834:1995..3032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score176.8
Seed ortholog evalue1.6e-41
Seed eggNOG ortholog2880.D7FY72
Preferred nameDPH2
KEGG koko:K17866
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0006448,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0016740,GO:0016765,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090560,GO:1900247,GO:1901564,GO:2000112,GO:2000765
EggNOG free text desc.Required for the first step in the synthesis of diphthamide, a post-translational modification of histidine which occurs in translation elongation factor 2
EggNOG OGsCOG1736@1,KOG2648@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012
Exons2
Model size936
Cds size936
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.1126323-CDS-H-paniculata_contig23834:1994..28061622929680.1126323-CDS-H-paniculata_contig23834:1994..2806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23834 1995..2806 -
1691480964.4228852-CDS-H-paniculata_contig23834:1994..28061691480964.4228852-CDS-H-paniculata_contig23834:1994..2806Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23834 1995..2806 -
1622929680.136029-CDS-H-paniculata_contig23834:2908..30321622929680.136029-CDS-H-paniculata_contig23834:2908..3032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23834 2909..3032 -
1691480964.4353662-CDS-H-paniculata_contig23834:2908..30321691480964.4353662-CDS-H-paniculata_contig23834:2908..3032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23834 2909..3032 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23834.6443.1prot_H-paniculata_contig23834.6443.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23834 1995..3032 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23834.6443.1

>prot_H-paniculata_contig23834.6443.1 ID=prot_H-paniculata_contig23834.6443.1|Name=mRNA_H-paniculata_contig23834.6443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=312bp
GRSCLSPTNSSVPVLYVFGKGQLDVQDLATTLLSGPLAPPPLRDLCDGGR
GGGGAGGAGGSKESTGAGKETQAAGVDPVLLLYDVTYSHAIPSLLEALGE
GYVRGGNGGARLVVGYPTPQAYSPNGRSSNSSSSSSSSSSSKVAVVDEGT
DAGPVVSACRRGEDNEAAGCGCAATATATRQGKDAAKALLSEDYPPAAAA
TATAPTPTTKDSIALSLATMPSLAEQATKNETPSVADIRIGGLGVEVESE
EALKRYKLFFVGGEGRQLTNVLLRCAGCRDRLRYDPLLPRGERLVAETGR
GNRDLMRRYVCV
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mRNA from alignment at H-paniculata_contig23834:1995..3032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23834.6443.1 ID=mRNA_H-paniculata_contig23834.6443.1|Name=mRNA_H-paniculata_contig23834.6443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1038bp|location=Sequence derived from alignment at H-paniculata_contig23834:1995..3032- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGCTCCTGCCTCAGCCCCACCAACTCTTCTGTACCGGTTCTTTATGT
CTTCGGGAAGGGACAGTTGGACGTGCAGGATTTGGCGACGACTCTGCTAT
CCGGGCCGTTGGCTCCGCCTCCACGTTTATCACCGTCGCAAGCAGTAACG
GCTATTTCTGACCCCGATTCCAAAGCTGGAGAAGAAGCAAAGCGAGACAT
TCTCAAATTGACAGTCGGCAACGAAGTTCGGGACTTATGCGATGGAGGGC
GGGGTGGCGGCGGCGCCGGCGGCGCCGGCGGCTCAAAGGAAAGTACTGGG
GCGGGTAAGGAAACGCAGGCCGCGGGCGTAGACCCCGTGCTCTTGTTATA
TGATGTTACGTATTCGCATGCTATTCCATCTCTATTGGAAGCCCTAGGCG
AGGGCTACGTAAGAGGTGGTAATGGTGGTGCCAGGCTTGTTGTGGGATAT
CCGACTCCTCAAGCGTATTCGCCGAATGGCCGAAGTAGCAACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCTCTAAGGTCGCCGTGGTAGACGAAGGGA
CAGACGCGGGGCCTGTGGTATCGGCATGCAGAAGAGGAGAAGATAACGAG
GCCGCTGGTTGCGGATGTGCTGCTACTGCTACTGCTACACGACAAGGGAA
AGACGCGGCTAAAGCGTTATTATCCGAAGACTACCCACCAGCTGCCGCAG
CAACAGCAACAGCACCGACACCAACGACTAAAGATAGCATAGCGCTATCA
TTGGCAACCATGCCTTCCCTTGCCGAACAAGCGACCAAAAACGAGACACC
CTCGGTTGCCGATATTCGAATCGGCGGTTTGGGAGTCGAGGTAGAGTCCG
AGGAAGCTCTGAAGAGGTACAAATTATTCTTTGTCGGAGGAGAAGGGCGG
CAGCTGACCAACGTTCTGCTGCGATGTGCGGGATGCCGCGATCGTCTGCG
GTACGATCCGTTGCTACCCCGCGGAGAGCGGTTGGTGGCCGAGACGGGTC
GCGGGAATCGAGACCTCATGCGTAGGTATGTTTGTGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig23834:1995..3032-

>mRNA_H-paniculata_contig23834.6443.1 ID=mRNA_H-paniculata_contig23834.6443.1|Name=mRNA_H-paniculata_contig23834.6443.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1872bp|location=Sequence derived from alignment at H-paniculata_contig23834:1995..3032- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGCGCTCCTGCCTCAGCCCCACCAACTCTTCTGTACCGGTTCTTTATGT
CTTCGGGAAGGGACAGTTGGACGTGCAGGATTTGGCGACGACTCTGCTAT
CCGGGCCGTTGGCTCCGCCTCCACGGGCGCTCCTGCCTCAGCCCCACCAA
CTCTTCTGTACCGGTTCTTTATGTCTTCGGGAAGGGACAGTTGGACGTGC
AGGATTTGGCGACGACTCTGCTATCCGGGCCGTTGGCTCCGCCTCCACTT
CGGGACTTATGCGATGGAGGGCGGGGTGGCGGCGGCGCCGGCGGCGCCGG
CGGCTCAAAGGAAAGTACTGGGGCGGGTAAGGAAACGCAGGCCGCGGGCG
TAGACCCCGTGCTCTTGTTATATGATGTTACGTATTCGCATGCTATTCCA
TCTCTATTGGAAGCCCTAGGCGAGGGCTACGTAAGAGGTGGTAATGGTGG
TGCCAGGCTTGTTGTGGGATATCCGACTCCTCAAGCGTATTCGCCGAATG
GCCGAAGTAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCTCTAAG
GTCGCCGTGGTAGACGAAGGGACAGACGCGGGGCCTGTGGTATCGGCATG
CAGAAGAGGAGAAGATAACGAGGCCGCTGGTTGCGGATGTGCTGCTACTG
CTACTGCTACACGACAAGGGAAAGACGCGGCTAAAGCGTTATTATCCGAA
GACTACCCACCAGCTGCCGCAGCAACAGCAACAGCACCGACACCAACGAC
TAAAGATAGCATAGCGCTATCATTGGCAACCATGCCTTCCCTTGCCGAAC
AAGCGACCAAAAACGAGACACCCTCGGTTGCCGATATTCGAATCGGCGGT
TTGGGAGTCGAGGTAGAGTCCGAGGAAGCTCTGAAGAGGTACAAATTATT
CTTTGTCGGAGGAGAAGGGCGGCAGCTGACCAACGTTCTGCTGCGATGTG
CGGGATGCCGCGATCGTCTGCGGTACGATCCGTTGCTACCCCGCGGAGAG
CGGTTGGTGGCCGAGACGGGTCGCGGGAATCGAGACCTCATGCGTAGGTA
TGTTTGTGTGTTCGGGACTTATGCGATGGAGGGCGGGGTGGCGGCGGCGC
CGGCGGCGCCGGCGGCTCAAAGGAAAGTACTGGGGCGGGTAAGGAAACGC
AGGCCGCGGGCGTAGACCCCGTGCTCTTGTTATATGATGTTACGTATTCG
CATGCTATTCCATCTCTATTGGAAGCCCTAGGCGAGGGCTACGTAAGAGG
TGGTAATGGTGGTGCCAGGCTTGTTGTGGGATATCCGACTCCTCAAGCGT
ATTCGCCGAATGGCCGAAGTAGCAACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCTCTAAGGTCGCCGTGGTAGACGAAGGGACAGACGCGGGGCCTGT
GGTATCGGCATGCAGAAGAGGAGAAGATAACGAGGCCGCTGGTTGCGGAT
GTGCTGCTACTGCTACTGCTACACGACAAGGGAAAGACGCGGCTAAAGCG
TTATTATCCGAAGACTACCCACCAGCTGCCGCAGCAACAGCAACAGCACC
GACACCAACGACTAAAGATAGCATAGCGCTATCATTGGCAACCATGCCTT
CCCTTGCCGAACAAGCGACCAAAAACGAGACACCCTCGGTTGCCGATATT
CGAATCGGCGGTTTGGGAGTCGAGGTAGAGTCCGAGGAAGCTCTGAAGAG
GTACAAATTATTCTTTGTCGGAGGAGAAGGGCGGCAGCTGACCAACGTTC
TGCTGCGATGTGCGGGATGCCGCGATCGTCTGCGGTACGATCCGTTGCTA
CCCCGCGGAGAGCGGTTGGTGGCCGAGACGGGTCGCGGGAATCGAGACCT
CATGCGTAGGTATGTTTGTGTG
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