mRNA_H-paniculata_contig23833.6442.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23833.6442.1
Unique NamemRNA_H-paniculata_contig23833.6442.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A5E4GKT5_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GKT5_PRUDU)

HSP 1 Score: 134 bits (337), Expect = 4.740e-34
Identity = 81/230 (35.22%), Postives = 131/230 (56.96%), Query Frame = 1
Query:    1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRENVDEF---KHNISQRCRMRDFGSCACWE*KYAVTALMVP*PSRRVATSRYYKYTVLTSVE 681
            +KV+ ++WI++ K   DGS+ R+KARLVA GF Q    D+ E  APVA+MST+R + S+A  +++ L  M+V  A+L+  +E+E++++LPP   P +++   V +L KS+Y L Q+ R+W   L   L   G +R   DS L++     G+  L+V +Y DD+ I G  +N+DE    KH++ Q+  ++D G       KY +   M   P     + R Y   +L  V+
Sbjct:    2 KKVVGSRWIYKTKFNSDGSIERHKARLVARGFTQTFGVDYKETFAPVAKMSTVRVLLSVAINHEWPLYQMDVKNAFLHGDLEEEVYMQLPPGH-PQAQNSSMVCKLHKSIYGLKQSPRAWYAKLSSVLEKFGFKRSHADSSLFVRTGSVGK--LVVLIYVDDIIITG--DNIDEINTLKHSLHQKFAIKDLGVL-----KYFLGIEMATSPKGLFLSQRKYVIDLLQEVK 221          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2Z6NLJ3_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NLJ3_TRISU)

HSP 1 Score: 140 bits (354), Expect = 2.440e-33
Identity = 74/191 (38.74%), Postives = 120/191 (62.83%), Query Frame = 1
Query:    1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRREN-VDEFKHNISQRCRMRDFGS 570
            ++ I  KWI++ KL+ +G +A+YKARLV+ GFLQ    DF E+ APVAR+ T+R V ++AA N +++  ++V++A+LN P+E+E+++K PP F    ++   V RLRK+LY L Q  R+WN  +  FL+ IG  +  ++  LY+ +       ++  +Y DDL I G  E  + +FK ++ Q   M D G+
Sbjct:  743 KRAIDVKWIYKLKLRPNGEIAKYKARLVSRGFLQKAGIDFNEVYAPVARLETIRIVVAIAAYNGWKMHQLDVESAFLNGPLEEEVYVKQPPGFEVKGQEQK-VYRLRKALYGLKQAPRAWNKRIDGFLIKIGFTKCVSEHGLYV-KGSSKLDHIIRCLYVDDLLITGANEKEILKFKTSLMQEFEMSDLGN 931          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2K3MSU0_TRIPR (Copia-type polyprotein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MSU0_TRIPR)

HSP 1 Score: 140 bits (353), Expect = 3.470e-33
Identity = 71/190 (37.37%), Postives = 120/190 (63.16%), Query Frame = 1
Query:    1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 567
            ++ I  KW+++ K+   G + R+KARLVA+GFLQ E  D+ E+ APV RM T+R V ++A  ND+ +  M+V +A+LN P+++E+++  PP F   +++   V RL+K+LY L Q  R+WN  +  FL+ IG E+  T+  +Y+ + D  +  +++ +Y DDL I G  ++ + EFK ++ +   M D G
Sbjct:  874 KRAIDVKWVYKLKVNSKGEITRHKARLVAKGFLQREGIDYGEVFAPVTRMETIRLVTAIANINDWPMYQMDVKSAFLNGPIDEEVYVAQPPGFKVKNQESK-VYRLKKALYGLKQAPRAWNKRMDKFLIEIGFEKCVTEHGVYVKKSDT-KGIIVMCLYVDDLLITGSNDSYIGEFKSDLKKEFEMTDLG 1061          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2Z6MHE6_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MHE6_TRISU)

HSP 1 Score: 140 bits (352), Expect = 4.480e-33
Identity = 76/190 (40.00%), Postives = 114/190 (60.00%), Query Frame = 1
Query:    1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRR-ENVDEFKHNISQRCRMRDFG 567
            +K I  KW+F+ K   DGS+ ++KARLVA GFLQ +  DF E  APVARM T+R V ++A+  D+ L  M+V +A+LN P+++E+++  PP F   S  +  V +L K+LY L Q  R+WN  + DFL   G  + T +  +Y+   D     +L+ +Y DDL I GR  +++D+FK  +     M D G
Sbjct:  653 KKAISVKWVFKLKKNPDGSIVKHKARLVARGFLQQQGIDFTEFYAPVARMETIRLVVAIASSFDWPLFHMDVKSAFLNGPLQEEVYVSQPPGFEVESH-MDKVYKLEKALYGLKQAPRAWNKRIDDFLHKEGFVKCTVEFGMYMKGTDISNV-ILICLYVDDLLITGRNVDSIDKFKGRLKDEFEMSDLG 840          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2K3KN89_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KN89_TRIPR)

HSP 1 Score: 131 bits (329), Expect = 8.490e-33
Identity = 71/190 (37.37%), Postives = 111/190 (58.42%), Query Frame = 1
Query:    1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRE-NVDEFKHNISQRCRMRDFG 567
            +K I  KW+++ K+   G + R+KARLV +GFLQ E  DF E+ APVARM T+R V +L   N + +  M+V  A+LN P+E+E+++  PP F     +   V +L K+LY L Q  R+WN  +  FL  IG  +  T+  +Y+ +    +T +++ +Y DDL I G  E  + +FK ++ +   M D G
Sbjct:   23 KKAISVKWVYKVKVNPKGEITRHKARLVVKGFLQKEGIDFNEVFAPVARMETIRLVTALTHYNKWSMHQMDVKCAFLNGPLEEEVYVVQPPGFIDKENESK-VYKLNKALYGLKQAPRAWNKRIDRFLSDIGFSKCITEHGVYVMKSATSDT-IILCLYVDDLLITGSNEAQISKFKVDMMKEFEMVDLG 210          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2K3N600_TRIPR (Putative copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N600_TRIPR)

HSP 1 Score: 139 bits (349), Expect = 1.150e-32
Identity = 71/187 (37.97%), Postives = 120/187 (64.17%), Query Frame = 1
Query:   10 IRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRENV-DEFKHNISQRCRMRDFG 567
            I  KW+F+ K+K +G +A+YKARLVA+GFLQ    D+ E+ APVAR+ T+R V ++A+   + +  ++V +A+LN P+++E+++K PP F    ++   V RLRK+LY L Q  R+WN  +  FL+ +   + T+++ +Y+ +    E  +++ +Y DDL I G  +NV ++FK +I +   M D G
Sbjct:  870 IDVKWVFKLKMKPNGEIAKYKARLVAKGFLQKHGLDYNEVFAPVARLETIRLVVAVASYRGWTMHQLDVKSAFLNGPLDEEVYVKQPPGFEIKGQEHK-VFRLRKALYGLKQAPRAWNKRIDSFLIKLKFTKCTSENGVYV-KGTSNEDLIILCLYVDDLLITGSNKNVLEKFKVDIMKEFEMSDLG 1054          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A151QNH5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QNH5_CAJCA)

HSP 1 Score: 139 bits (349), Expect = 1.170e-32
Identity = 74/191 (38.74%), Postives = 118/191 (61.78%), Query Frame = 1
Query:    1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLV-AVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 567
            +K I  KW+F+ K K DGS+A++KARLVA+GF+Q E  D+ E+ APVAR+ T+R + +LA+  +++L  ++V +A+LN P+++E+F+  PP F    +++  V RL+K+LY L Q  R+WN  +  FL G G ++ + +  +YI      ET +LV  +Y DDL I G     ++  K  +     M D G
Sbjct:  867 KKAIAVKWVFKTKFKSDGSIAKHKARLVAKGFMQKEGIDYSEVFAPVARLETVRLIVALASWRNWKLWQLDVKSAFLNGPLDEEVFVTQPPGFICKGKELK-VLRLKKALYGLKQAPRAWNKRIDSFLTGFGFQKCSVEHGVYIKTVS--ETEILVLCLYVDDLLITGSSLTAIESLKQGLKSEFEMTDLG 1054          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2Z6NYP5_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NYP5_TRISU)

HSP 1 Score: 138 bits (347), Expect = 2.080e-32
Identity = 75/191 (39.27%), Postives = 116/191 (60.73%), Query Frame = 1
Query:    1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLV-AVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 567
            ++ I  KW+++ K+   G + R+KARLVA+GFLQ E  D+ E+ APV RM T+R V ++A  ND+ +  M+V +A+LN P+E+E+F+  PP +   S++   V RL+K+LY L Q  R+W   +  FL  IG  +  T+   Y+ + D  E  L+V  +Y DDL I G  +N + EFK ++ +   M D G
Sbjct:  714 KRAIDVKWVYKLKMNSKGEITRHKARLVAKGFLQREGIDYGEVIAPVTRMETIRLVTAIANMNDWPMYQMDVKSAFLNGPIEEEVFVTQPPGYVVKSQENK-VYRLKKALYGLKQAPRAWKRRIDKFLTEIGFVKCVTEHGAYVKKHD--EKGLIVMCLYVDDLLITGSNDNYISEFKSDLKKEFEMTDLG 901          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A8J5ZME6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZME6_9ROSI)

HSP 1 Score: 137 bits (346), Expect = 2.290e-32
Identity = 74/189 (39.15%), Postives = 119/189 (62.96%), Query Frame = 1
Query:    4 KVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 567
            KVI  KW+F  K   DGS+ +YKARLV +G+ Q    DF E  APVAR+ T++ +F+LAA+ D+++  ++V +A+LN  + +E+FI+ P  F    ++   V RL+K+LY L Q  R+W + +  +L  +G E+  +++ LY+ R  G ET L+V++Y DDL + G +E  ++EFK  + +   M D G
Sbjct:  314 KVIGVKWVFRTKYNADGSLNKYKARLVVKGYSQQYGIDFMETFAPVARLDTIKLLFALAAQKDWKVHQLDVKSAFLNGFLREEIFIEQPEGFKVQGQEDK-VYRLKKALYGLKQAPRAWYDRIDTYLSRLGFEKSVSEATLYVKRLKG-ETLLIVSLYVDDLLVTGSKEELINEFKEQMLKVFEMTDLG 500          
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A8J5Y6F8_9ROSI (Integrase catalytic domain-containing protein n=4 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y6F8_9ROSI)

HSP 1 Score: 137 bits (346), Expect = 2.890e-32
Identity = 74/189 (39.15%), Postives = 119/189 (62.96%), Query Frame = 1
Query:    4 KVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 567
            KVI  KW+F  K   DGS+ +YKARLV +G+ Q    DF E  APVAR+ T++ +F+LAA+ D+++  ++V +A+LN  + +E+FI+ P  F    ++   V RL+K+LY L Q  R+W + +  +L  +G E+  +++ LY+ R  G ET L+V++Y DDL + G +E  ++EFK  + +   M D G
Sbjct:  838 KVIGVKWVFRTKYNADGSLNKYKARLVVKGYSQQYGIDFMETFAPVARLDTIKLLFALAAQKDWKVHQLDVKSAFLNGFLREEIFIEQPEGFKVQGQEDK-VYRLKKALYGLKQAPRAWYDRIDTYLSRLGFEKSVSEATLYVKRLKG-ETLLIVSLYVDDLLVTGSKEELINEFKEQMLKVFEMTDLG 1024          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5E4GKT5_PRUDU4.740e-3435.22PREDICTED: Retrovirus-related Pol poly from transp... [more]
A0A2Z6NLJ3_TRISU2.440e-3338.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A2K3MSU0_TRIPR3.470e-3337.37Copia-type polyprotein n=1 Tax=Trifolium pratense ... [more]
A0A2Z6MHE6_TRISU4.480e-3340.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A2K3KN89_TRIPR8.490e-3337.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3N600_TRIPR1.150e-3237.97Putative copia-type polyprotein (Fragment) n=1 Tax... [more]
A0A151QNH5_CAJCA1.170e-3238.74Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z6NYP5_TRISU2.080e-3239.27Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A8J5ZME6_9ROSI2.290e-3239.15Integrase catalytic domain-containing protein n=1 ... [more]
A0A8J5Y6F8_9ROSI2.890e-3239.15Integrase catalytic domain-containing protein n=4 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23833contigH-paniculata_contig23833:2635..3890 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue8.3e-17
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1007
Cds size441
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23833.6442.1prot_H-paniculata_contig23833.6442.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23833 2782..3222 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.9981656-UTR-H-paniculata_contig23833:2634..27811622929679.9981656-UTR-H-paniculata_contig23833:2634..2781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23833 2635..2781 +
1691480964.3761318-UTR-H-paniculata_contig23833:2634..27811691480964.3761318-UTR-H-paniculata_contig23833:2634..2781Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23833 2635..2781 +
1622929680.0312474-UTR-H-paniculata_contig23833:3222..34501622929680.0312474-UTR-H-paniculata_contig23833:3222..3450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23833 3223..3450 +
1691480964.400229-UTR-H-paniculata_contig23833:3222..34501691480964.400229-UTR-H-paniculata_contig23833:3222..3450Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23833 3223..3450 +
1622929680.0561678-UTR-H-paniculata_contig23833:3699..38901622929680.0561678-UTR-H-paniculata_contig23833:3699..3890Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23833 3700..3890 +
1691480964.413937-UTR-H-paniculata_contig23833:3699..38901691480964.413937-UTR-H-paniculata_contig23833:3699..3890Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23833 3700..3890 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.013311-CDS-H-paniculata_contig23833:2781..32221622929680.013311-CDS-H-paniculata_contig23833:2781..3222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23833 2782..3222 +
1691480964.391164-CDS-H-paniculata_contig23833:2781..32221691480964.391164-CDS-H-paniculata_contig23833:2781..3222Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23833 2782..3222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23833.6442.1

>prot_H-paniculata_contig23833.6442.1 ID=prot_H-paniculata_contig23833.6442.1|Name=mRNA_H-paniculata_contig23833.6442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRD
IPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDG
GETSLLVAVYADDLAIAGRRENVDEFKHNISQRCRMRDFGSCACWE*
back to top

mRNA from alignment at H-paniculata_contig23833:2635..3890+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23833.6442.1 ID=mRNA_H-paniculata_contig23833.6442.1|Name=mRNA_H-paniculata_contig23833.6442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1256bp|location=Sequence derived from alignment at H-paniculata_contig23833:2635..3890+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGAAGGTAATTCGTACGAAATGGATTTTCGAGCGGAAACTGAAGGAGGA CGGCAGCGTGGCACGCTACAAAGCGCGACTGGTGGCTGAAGGGTTTTTAC AGGTGGAGGTTAAAGATTTCTTTGAAATCAATGCCCCGGTTGCTCGCATG TCGACGTTACGTACTGTTTTCAGCCTGGCCGCCGAAAACGATTTCGAATT AGAAGGCATGGAGGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAAAAG AGCTGTTTATTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCCGAGACATA CCATTTGTGCGCCGCCTGCGTAAAAGCTTGTACATCCTCAATCAGAACCG CCGTAGCTGGAATAACACCCTTGGTGATTTTCTTGTTGGGATAGGACTCG AACGTTTCACTACCGACTCATGCTTGTACATTTCTCGCGATGATGGGGGA GAGACAAGCCTTCTGGTGGCCGTGTATGCTGACGACCTGGCCATTGCTGG CCGTCGTGAGAACGTAGATGAGTTCAAGCATAACATAAGCCAGCGTTGTA GGATGAGAGACTTTGGCTCTTGTGCGTGTTGGGAATAGAAGTACGCCGTG ACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCCACATCGAGGTA CTACAAATATACGGTTTTGACGAGTGTCGAGGGGTACACACCCCTGTACA GGGAAACGTGAAGATTTCGGCACCCGAGCCGGCCGACAAGCCTCCCGAAC CGAAGTCACTTGGAGCTGTACTGTCGGACACAGGTGCAGGAGTACAAGAA AGCAAAAGAGGGGGAAGTGGCAAAGCAACTGAATACAGAGGAATGGCAGG ATCACTCATGTACGCCTCGACAGGAACTAGACCTGATATAGCGTACGCGA TACACCAAGCAGCACGTCGTATGGAGGATCCATGTCGACAAGACTTCAGT ACATGCAAGCGCATTTTTCGTTATCTCAGTACTGTGCCTGACCTCGGCAT TACGCTCGGCGGTAAGAGTAATGGCCACGGTCTGGAAGGATTCGGTGATG CCGATTGGGCGGAAGATGTCGAGGACCGAAAGTCCACAACAGGACACGTT TTCAAGCTGAACGGTGGTGCAATAAGTTGGTGCTCTAGGAAGCAACAGTT AGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTGCTGCAGGAGAAGGGG GAAAGGGGACGGTATATCTTAGGGAGTTACTAGGATCGATGGGTTTCGGA TGCAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23833:2635..3890+

>mRNA_H-paniculata_contig23833.6442.1 ID=mRNA_H-paniculata_contig23833.6442.1|Name=mRNA_H-paniculata_contig23833.6442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig23833:2635..3890+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTACGTACTGTTTTCAGCCTGGCCGCCGAAAACGATTTCGA
ATTAGAAGGCATGGAGGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAA
AAGAGCTGTTTATTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCCGAGAC
ATACCATTTGTGCGCCGCCTGCGTAAAAGCTTGTACATCCTCAATCAGAA
CCGCCGTAGCTGGAATAACACCCTTGGTGATTTTCTTGTTGGGATAGGAC
TCGAACGTTTCACTACCGACTCATGCTTGTACATTTCTCGCGATGATGGG
GGAGAGACAAGCCTTCTGGTGGCCGTGTATGCTGACGACCTGGCCATTGC
TGGCCGTCGTGAGAACGTAGATGAGTTCAAGCATAACATAAGCCAGCGTT
GTAGGATGAGAGACTTTGGCTCTTGTGCGTGTTGGGAATAGATGTCGACG
TTACGTACTGTTTTCAGCCTGGCCGCCGAAAACGATTTCGAATTAGAAGG
CATGGAGGTAGATGCGGCGTATTTGAACGCCCCGGTAGAAAAAGAGCTGT
TTATTAAGCTACCCCCCGAGTTTTCCCCTTTCTCCCGAGACATACCATTT
GTGCGCCGCCTGCGTAAAAGCTTGTACATCCTCAATCAGAACCGCCGTAG
CTGGAATAACACCCTTGGTGATTTTCTTGTTGGGATAGGACTCGAACGTT
TCACTACCGACTCATGCTTGTACATTTCTCGCGATGATGGGGGAGAGACA
AGCCTTCTGGTGGCCGTGTATGCTGACGACCTGGCCATTGCTGGCCGTCG
TGAGAACGTAGATGAGTTCAAGCATAACATAAGCCAGCGTTGTAGGATGA
GAGACTTTGGCTCTTGTGCGTGTTGGGAATAG
back to top