mRNA_H-paniculata_contig23833.6442.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A5E4GKT5_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GKT5_PRUDU) HSP 1 Score: 134 bits (337), Expect = 4.740e-34 Identity = 81/230 (35.22%), Postives = 131/230 (56.96%), Query Frame = 1
Query: 1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRENVDEF---KHNISQRCRMRDFGSCACWE*KYAVTALMVP*PSRRVATSRYYKYTVLTSVE 681
+KV+ ++WI++ K DGS+ R+KARLVA GF Q D+ E APVA+MST+R + S+A +++ L M+V A+L+ +E+E++++LPP P +++ V +L KS+Y L Q+ R+W L L G +R DS L++ G+ L+V +Y DD+ I G +N+DE KH++ Q+ ++D G KY + M P + R Y +L V+
Sbjct: 2 KKVVGSRWIYKTKFNSDGSIERHKARLVARGFTQTFGVDYKETFAPVAKMSTVRVLLSVAINHEWPLYQMDVKNAFLHGDLEEEVYMQLPPGH-PQAQNSSMVCKLHKSIYGLKQSPRAWYAKLSSVLEKFGFKRSHADSSLFVRTGSVGK--LVVLIYVDDIIITG--DNIDEINTLKHSLHQKFAIKDLGVL-----KYFLGIEMATSPKGLFLSQRKYVIDLLQEVK 221
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2Z6NLJ3_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NLJ3_TRISU) HSP 1 Score: 140 bits (354), Expect = 2.440e-33 Identity = 74/191 (38.74%), Postives = 120/191 (62.83%), Query Frame = 1
Query: 1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRREN-VDEFKHNISQRCRMRDFGS 570
++ I KWI++ KL+ +G +A+YKARLV+ GFLQ DF E+ APVAR+ T+R V ++AA N +++ ++V++A+LN P+E+E+++K PP F ++ V RLRK+LY L Q R+WN + FL+ IG + ++ LY+ + ++ +Y DDL I G E + +FK ++ Q M D G+
Sbjct: 743 KRAIDVKWIYKLKLRPNGEIAKYKARLVSRGFLQKAGIDFNEVYAPVARLETIRIVVAIAAYNGWKMHQLDVESAFLNGPLEEEVYVKQPPGFEVKGQEQK-VYRLRKALYGLKQAPRAWNKRIDGFLIKIGFTKCVSEHGLYV-KGSSKLDHIIRCLYVDDLLITGANEKEILKFKTSLMQEFEMSDLGN 931
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2K3MSU0_TRIPR (Copia-type polyprotein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MSU0_TRIPR) HSP 1 Score: 140 bits (353), Expect = 3.470e-33 Identity = 71/190 (37.37%), Postives = 120/190 (63.16%), Query Frame = 1
Query: 1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 567
++ I KW+++ K+ G + R+KARLVA+GFLQ E D+ E+ APV RM T+R V ++A ND+ + M+V +A+LN P+++E+++ PP F +++ V RL+K+LY L Q R+WN + FL+ IG E+ T+ +Y+ + D + +++ +Y DDL I G ++ + EFK ++ + M D G
Sbjct: 874 KRAIDVKWVYKLKVNSKGEITRHKARLVAKGFLQREGIDYGEVFAPVTRMETIRLVTAIANINDWPMYQMDVKSAFLNGPIDEEVYVAQPPGFKVKNQESK-VYRLKKALYGLKQAPRAWNKRMDKFLIEIGFEKCVTEHGVYVKKSDT-KGIIVMCLYVDDLLITGSNDSYIGEFKSDLKKEFEMTDLG 1061
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2Z6MHE6_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MHE6_TRISU) HSP 1 Score: 140 bits (352), Expect = 4.480e-33 Identity = 76/190 (40.00%), Postives = 114/190 (60.00%), Query Frame = 1
Query: 1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRR-ENVDEFKHNISQRCRMRDFG 567
+K I KW+F+ K DGS+ ++KARLVA GFLQ + DF E APVARM T+R V ++A+ D+ L M+V +A+LN P+++E+++ PP F S + V +L K+LY L Q R+WN + DFL G + T + +Y+ D +L+ +Y DDL I GR +++D+FK + M D G
Sbjct: 653 KKAISVKWVFKLKKNPDGSIVKHKARLVARGFLQQQGIDFTEFYAPVARMETIRLVVAIASSFDWPLFHMDVKSAFLNGPLQEEVYVSQPPGFEVESH-MDKVYKLEKALYGLKQAPRAWNKRIDDFLHKEGFVKCTVEFGMYMKGTDISNV-ILICLYVDDLLITGRNVDSIDKFKGRLKDEFEMSDLG 840
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2K3KN89_TRIPR (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KN89_TRIPR) HSP 1 Score: 131 bits (329), Expect = 8.490e-33 Identity = 71/190 (37.37%), Postives = 111/190 (58.42%), Query Frame = 1
Query: 1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRE-NVDEFKHNISQRCRMRDFG 567
+K I KW+++ K+ G + R+KARLV +GFLQ E DF E+ APVARM T+R V +L N + + M+V A+LN P+E+E+++ PP F + V +L K+LY L Q R+WN + FL IG + T+ +Y+ + +T +++ +Y DDL I G E + +FK ++ + M D G
Sbjct: 23 KKAISVKWVYKVKVNPKGEITRHKARLVVKGFLQKEGIDFNEVFAPVARMETIRLVTALTHYNKWSMHQMDVKCAFLNGPLEEEVYVVQPPGFIDKENESK-VYKLNKALYGLKQAPRAWNKRIDRFLSDIGFSKCITEHGVYVMKSATSDT-IILCLYVDDLLITGSNEAQISKFKVDMMKEFEMVDLG 210
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2K3N600_TRIPR (Putative copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N600_TRIPR) HSP 1 Score: 139 bits (349), Expect = 1.150e-32 Identity = 71/187 (37.97%), Postives = 120/187 (64.17%), Query Frame = 1
Query: 10 IRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRRENV-DEFKHNISQRCRMRDFG 567
I KW+F+ K+K +G +A+YKARLVA+GFLQ D+ E+ APVAR+ T+R V ++A+ + + ++V +A+LN P+++E+++K PP F ++ V RLRK+LY L Q R+WN + FL+ + + T+++ +Y+ + E +++ +Y DDL I G +NV ++FK +I + M D G
Sbjct: 870 IDVKWVFKLKMKPNGEIAKYKARLVAKGFLQKHGLDYNEVFAPVARLETIRLVVAVASYRGWTMHQLDVKSAFLNGPLDEEVYVKQPPGFEIKGQEHK-VFRLRKALYGLKQAPRAWNKRIDSFLIKLKFTKCTSENGVYV-KGTSNEDLIILCLYVDDLLITGSNKNVLEKFKVDIMKEFEMSDLG 1054
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A151QNH5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Cajanus cajan TaxID=3821 RepID=A0A151QNH5_CAJCA) HSP 1 Score: 139 bits (349), Expect = 1.170e-32 Identity = 74/191 (38.74%), Postives = 118/191 (61.78%), Query Frame = 1
Query: 1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLV-AVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 567
+K I KW+F+ K K DGS+A++KARLVA+GF+Q E D+ E+ APVAR+ T+R + +LA+ +++L ++V +A+LN P+++E+F+ PP F +++ V RL+K+LY L Q R+WN + FL G G ++ + + +YI ET +LV +Y DDL I G ++ K + M D G
Sbjct: 867 KKAIAVKWVFKTKFKSDGSIAKHKARLVAKGFMQKEGIDYSEVFAPVARLETVRLIVALASWRNWKLWQLDVKSAFLNGPLDEEVFVTQPPGFICKGKELK-VLRLKKALYGLKQAPRAWNKRIDSFLTGFGFQKCSVEHGVYIKTVS--ETEILVLCLYVDDLLITGSSLTAIESLKQGLKSEFEMTDLG 1054
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A2Z6NYP5_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NYP5_TRISU) HSP 1 Score: 138 bits (347), Expect = 2.080e-32 Identity = 75/191 (39.27%), Postives = 116/191 (60.73%), Query Frame = 1
Query: 1 RKVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLV-AVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 567
++ I KW+++ K+ G + R+KARLVA+GFLQ E D+ E+ APV RM T+R V ++A ND+ + M+V +A+LN P+E+E+F+ PP + S++ V RL+K+LY L Q R+W + FL IG + T+ Y+ + D E L+V +Y DDL I G +N + EFK ++ + M D G
Sbjct: 714 KRAIDVKWVYKLKMNSKGEITRHKARLVAKGFLQREGIDYGEVIAPVTRMETIRLVTAIANMNDWPMYQMDVKSAFLNGPIEEEVFVTQPPGYVVKSQENK-VYRLKKALYGLKQAPRAWKRRIDKFLTEIGFVKCVTEHGAYVKKHD--EKGLIVMCLYVDDLLITGSNDNYISEFKSDLKKEFEMTDLG 901
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A8J5ZME6_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5ZME6_9ROSI) HSP 1 Score: 137 bits (346), Expect = 2.290e-32 Identity = 74/189 (39.15%), Postives = 119/189 (62.96%), Query Frame = 1
Query: 4 KVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 567
KVI KW+F K DGS+ +YKARLV +G+ Q DF E APVAR+ T++ +F+LAA+ D+++ ++V +A+LN + +E+FI+ P F ++ V RL+K+LY L Q R+W + + +L +G E+ +++ LY+ R G ET L+V++Y DDL + G +E ++EFK + + M D G
Sbjct: 314 KVIGVKWVFRTKYNADGSLNKYKARLVVKGYSQQYGIDFMETFAPVARLDTIKLLFALAAQKDWKVHQLDVKSAFLNGFLREEIFIEQPEGFKVQGQEDK-VYRLKKALYGLKQAPRAWYDRIDTYLSRLGFEKSVSEATLYVKRLKG-ETLLIVSLYVDDLLVTGSKEELINEFKEQMLKVFEMTDLG 500
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Match: A0A8J5Y6F8_9ROSI (Integrase catalytic domain-containing protein n=4 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5Y6F8_9ROSI) HSP 1 Score: 137 bits (346), Expect = 2.890e-32 Identity = 74/189 (39.15%), Postives = 119/189 (62.96%), Query Frame = 1
Query: 4 KVIRTKWIFERKLKEDGSVARYKARLVAEGFLQVEVKDFFEINAPVARMSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDIPFVRRLRKSLYILNQNRRSWNNTLGDFLVGIGLERFTTDSCLYISRDDGGETSLLVAVYADDLAIAGRREN-VDEFKHNISQRCRMRDFG 567
KVI KW+F K DGS+ +YKARLV +G+ Q DF E APVAR+ T++ +F+LAA+ D+++ ++V +A+LN + +E+FI+ P F ++ V RL+K+LY L Q R+W + + +L +G E+ +++ LY+ R G ET L+V++Y DDL + G +E ++EFK + + M D G
Sbjct: 838 KVIGVKWVFRTKYNADGSLNKYKARLVVKGYSQQYGIDFMETFAPVARLDTIKLLFALAAQKDWKVHQLDVKSAFLNGFLREEIFIEQPEGFKVQGQEDK-VYRLKKALYGLKQAPRAWYDRIDTYLSRLGFEKSVSEATLYVKRLKG-ETLLIVSLYVDDLLVTGSKEELINEFKEQMLKVFEMTDLG 1024 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23833.6442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23833.6442.1 >prot_H-paniculata_contig23833.6442.1 ID=prot_H-paniculata_contig23833.6442.1|Name=mRNA_H-paniculata_contig23833.6442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp MSTLRTVFSLAAENDFELEGMEVDAAYLNAPVEKELFIKLPPEFSPFSRDback to top mRNA from alignment at H-paniculata_contig23833:2635..3890+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23833.6442.1 ID=mRNA_H-paniculata_contig23833.6442.1|Name=mRNA_H-paniculata_contig23833.6442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1256bp|location=Sequence derived from alignment at H-paniculata_contig23833:2635..3890+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23833:2635..3890+ >mRNA_H-paniculata_contig23833.6442.1 ID=mRNA_H-paniculata_contig23833.6442.1|Name=mRNA_H-paniculata_contig23833.6442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig23833:2635..3890+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |