mRNA_H-paniculata_contig23808.6438.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23808.6438.1
Unique NamemRNA_H-paniculata_contig23808.6438.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23808.6438.1 vs. uniprot
Match: D7FJ01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ01_ECTSI)

HSP 1 Score: 236 bits (601), Expect = 5.760e-75
Identity = 115/187 (61.50%), Postives = 146/187 (78.07%), Query Frame = 1 
Query:    1 NEVAQLLAMSEEERTDLGAAVLAAAVERESAQRSAVPSSDGYLKSFGGTKVDTEMENEYASIMRGGMGTESEECLHPILRRVHCGHGQDLAQLRSAGKWLRYLGVKGCYLWIHSLTREVTALRPEDYEDSNALSGGDSEEDVAGGYPSCPLLGLPDAIKRIIDHEKKTPLLIDSSEDGKVTAFLSYK 561
            ++V QLLA+S +E+ +LG AVL A +++E+  R  + S+  Y KSFGGTK DT++ENEYAS++RG  G E  E   PILR V C + +DL +LRSAG WLRYLG KGCYLWIHSLTREVTALRP DY D N+L+    EEDV GGYP+CPL GLP+ I++I+D +K+TPLLID+SE+GKVTA+LSYK
Sbjct:   33 DQVHQLLALSVDEKLELGKAVLQAVLQKENGLRVKMESAGDYDKSFGGTKQDTQVENEYASLVRGDHGAEPTEHTFPILRIVECNNQEDLVKLRSAGNWLRYLGAKGCYLWIHSLTREVTALRPHDYVDENSLAEAKEEEDVTGGYPTCPLSGLPELIEKIVDQDKRTPLLIDNSEEGKVTAYLSYK 219
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BLAST of mRNA_H-paniculata_contig23808.6438.1 vs. uniprot
Match: F0Y5N5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5N5_AURAN)

HSP 1 Score: 83.6 bits (205), Expect = 1.940e-16
Identity = 41/85 (48.24%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:  307 LGVKGCYLWIHSLTREVTALRPEDYEDSNALSGGDSEEDVAGGYPSCPLLGLPDAIKRIIDHEKKTPLLIDSSEDGKVTAFLSYK 561
            +G  GCY+++HSLT E  A RP+ + D   L    ++ED AGG P   L  +   IKRII+ EKKTPLL+D+SED K+  F S+K
Sbjct:    1 MGGSGCYVYVHSLTHEFAANRPDGFIDDGDLK---AKEDAAGGLPVVALTEVVGEIKRIIEEEKKTPLLLDASEDRKLATFFSFK 82
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BLAST of mRNA_H-paniculata_contig23808.6438.1 vs. uniprot
Match: A0A7S0MT40_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MT40_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 2.200e-12
Identity = 48/138 (34.78%), Postives = 69/138 (50.00%), Query Frame = 1 
Query:  145 TKVDTEMENEYASIMRGGMGTESEEC-LHPILRRVHCGHGQDLAQLRSAGKWLRYLGV-KGCYLWIHSLTREVTALRPEDYEDSNA-------LSGGDSEEDVAGGYPSCPLLGLPDAIKRIIDHEKKTPLLIDSSED 531
            TK DT +E     +MRGG   ES    L P     H   G         GKWLR L   K CYL++H++T E+T ++P+ + D  A       L+ G+   DVA    SC +  L +  + +I  +KKTPL++ + ED
Sbjct:    1 TKNDTVVEKSMEQLMRGGAAEESGPFQLGPCTCSTHSAEGVHAKD--CPGKWLRTLNKQKTCYLYVHTITHEITGIKPDGFYDPEAERRAALLLAAGEFP-DVA----SCYMENLEEQARAMIAEQKKTPLILTNGED 131
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BLAST of mRNA_H-paniculata_contig23808.6438.1 vs. uniprot
Match: A0A0G4EW28_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EW28_VITBC)

HSP 1 Score: 70.5 bits (171), Expect = 3.720e-11
Identity = 48/154 (31.17%), Postives = 74/154 (48.05%), Query Frame = 1 
Query:  124 YLKSFGGTKVDTEMENEYASIMR-----GGMGTESEECLHPILRRVHCGHGQDLAQLRSAGKWLRYLGVKG-CYLWIHSLTREVTALRPEDYED--SNALSGGDSEEDVAGGYPSCPLLGLPDAIKRIIDHEKKTPLLIDSSEDGKVTAFLSYK 561
            Y KSF G+K     E E+A++++       MG  SE+ L                   + GKW R+L  +G CYL+IH++T+E+TA+RPE+Y D  +    GGD + +     P+  L  L   ++R  + +K   LL +      V  F  YK
Sbjct:   28 YSKSFSGSKEMAAAEKEFATLVKDDKNEASMGGVSEKSL-------------------TTGKWYRFLNAQGTCYLYIHNITKEITAIRPENYVDEPNTTQQGGDDDVNKTK-EPTIQLRQLEAELERCKNAQKIPLLLCNEETHDNVVTFFKYK 161
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BLAST of mRNA_H-paniculata_contig23808.6438.1 vs. uniprot
Match: A0A0G4HPF3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HPF3_9ALVE)

HSP 1 Score: 58.5 bits (140), Expect = 6.660e-7
Identity = 38/147 (25.85%), Postives = 65/147 (44.22%), Query Frame = 1 
Query:  124 YLKSFGGTKVDTEMENEYASIMRGGMGTESEECLHPILRRVHCGHGQDLAQLRSAGKWLRYLGVKG-CYLWIHSLTREVTALRPEDYEDSNALSGGDSEEDVAGGYPSCPLLGLPDAIKRIIDHEKKTPLLIDSSEDGKVTAFLSYK 561
            Y KS GG+K   + E E+A + +  MG + +              G    +    GKW ++L  +G C+L+IH++T+++T++RPE+YED                    PL  +  A+++     K   L  D +    +  F  YK
Sbjct:   32 YSKSLGGSKQMAQNEKEFADMAK--MGGKEDGATQ---------QGGVSEKSLKCGKWYKFLNAQGTCFLYIHNITKDITSIRPENYEDEPEEKSAAXXXXXXXXXXXVPLKEIEAALEKAKAAGKIPLLQCDEATHEALLTFFKYK 167
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BLAST of mRNA_H-paniculata_contig23808.6438.1 vs. uniprot
Match: A0A8J1ZYU3_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J1ZYU3_9DINO)

HSP 1 Score: 53.9 bits (128), Expect = 3.210e-5
Identity = 31/94 (32.98%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:  283 SAGKWLRYLGVKG-CYLWIHSLTREVTALRPEDYEDSNALSGGDSEEDVAGGYPSCPLLGLPDAIKRIIDHEKKTPLLIDSSE-DGKVTAFLSY 558
              G+W ++L   G CY+++H+LTR++TA+RPE++ +  A    + E++   G P    L +P  + +I    KK PL+  + E   K+  F+SY
Sbjct:  143 KTGRWYKFLNFSGTCYVYVHNLTRDITAVRPENFTEPTAE---ELEQERKKGLPLT--LVIPAELDKI-GSRKKIPLVFCTEETQEKIRTFMSY 230
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23808.6438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FJ01_ECTSI5.760e-7561.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F0Y5N5_AURAN1.940e-1648.24Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0MT40_9CHLO2.200e-1234.78Hypothetical protein (Fragment) n=1 Tax=Pyramimona... [more]
A0A0G4EW28_VITBC3.720e-1131.17Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4HPF3_9ALVE6.660e-725.85Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A8J1ZYU3_9DINO3.210e-532.98Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23808contigH-paniculata_contig23808:161..1832 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score229.9
Seed ortholog evalue9e-58
Seed eggNOG ortholog2880.D7FJ01
Hectar predicted targeting categoryother localisation
EggNOG OGs2E7BE@1,2SDY5@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_004960.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size561
Cds size537
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23808.6438.1prot_H-paniculata_contig23808.6438.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23808 161..1808 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.343435-CDS-H-paniculata_contig23808:160..2911622929679.343435-CDS-H-paniculata_contig23808:160..291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23808 161..291 -
1691480964.0711799-CDS-H-paniculata_contig23808:160..2911691480964.0711799-CDS-H-paniculata_contig23808:160..291Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23808 161..291 -
1622929679.3571477-CDS-H-paniculata_contig23808:894..10601622929679.3571477-CDS-H-paniculata_contig23808:894..1060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23808 895..1060 -
1691480964.0808256-CDS-H-paniculata_contig23808:894..10601691480964.0808256-CDS-H-paniculata_contig23808:894..1060Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23808 895..1060 -
1622929679.3738244-CDS-H-paniculata_contig23808:1344..14461622929679.3738244-CDS-H-paniculata_contig23808:1344..1446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23808 1345..1446 -
1691480964.0892901-CDS-H-paniculata_contig23808:1344..14461691480964.0892901-CDS-H-paniculata_contig23808:1344..1446Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23808 1345..1446 -
1622929679.3914654-CDS-H-paniculata_contig23808:1670..18081622929679.3914654-CDS-H-paniculata_contig23808:1670..1808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23808 1671..1808 -
1691480964.0980275-CDS-H-paniculata_contig23808:1670..18081691480964.0980275-CDS-H-paniculata_contig23808:1670..1808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23808 1671..1808 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.407123-UTR-H-paniculata_contig23808:1808..18321622929679.407123-UTR-H-paniculata_contig23808:1808..1832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23808 1809..1832 -
1691480964.1073651-UTR-H-paniculata_contig23808:1808..18321691480964.1073651-UTR-H-paniculata_contig23808:1808..1832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23808 1809..1832 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23808.6438.1

>prot_H-paniculata_contig23808.6438.1 ID=prot_H-paniculata_contig23808.6438.1|Name=mRNA_H-paniculata_contig23808.6438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MSEEERTDLGAAVLAAAVERESAQRSAVPSSDGYLKSFGGTKVDTEMENE
YASIMRGGMGTESEECLHPILRRVHCGHGQDLAQLRSAGKWLRYLGVKGC
YLWIHSLTREVTALRPEDYEDSNALSGGDSEEDVAGGYPSCPLLGLPDAI
KRIIDHEKKTPLLIDSSEDGKVTAFLSYK
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mRNA from alignment at H-paniculata_contig23808:161..1832-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23808.6438.1 ID=mRNA_H-paniculata_contig23808.6438.1|Name=mRNA_H-paniculata_contig23808.6438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1672bp|location=Sequence derived from alignment at H-paniculata_contig23808:161..1832- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGAAGTAGCTCAATTGCTTGCAATGAGCGAAGAAGAGAGGACTGATCT
GGGCGCAGCCGTTCTGGCCGCGGCTGTAGAGCGAGAGTCTGCTCAGCGGA
GTGCGGTACCCAGTAGCGATGGGTACTTGAAATCATTTGGGGGCACCAAA
GTCGATACAGAGGTAGGTAGGCACACGCGCGGTGACCCTATTCTGCCATG
CACCTGTAAACCTCATAAACATCATACGTGCACCTTTGTATGCACGGCCG
AGGCCAAAATGACCCATATGCGGCAGGGTAGCCCTTACTGATTGCACACA
GAGTTGGATCCTCCTCTTCCTGCCGCGTGCAACAACCAAACCGTGTTACC
CTCAGGCATCGAAACAAAACCGTGCTCTCTCGGCAGATGGAGAACGAATA
TGCAAGTATCATGCGGGGTGGAATGGGCACCGAGTCCGAAGAATGCCTAC
ATCCAATATTAAGGCGGGTCCACTGCGGTCATGGCCAGGTATGATCGATT
TCCTTATGAAGTATGCAAATATTTCACAAGACCTGGAGAACGTTCCTCGG
AACCAATCACAGAGTGACAAATGCCTCCTTCAAAGAAATGCAATATCATG
AAAAACAAGAAAGGGTACATATGCTACAGGAAGTGTGAGATACCAGACGC
TCCAGAAATTTTGAACGGGTCGGAAGCTACCAAACGGAACGATGAATAAC
AAATTTTGACATCTCCAAATTCCCCAGCGTTGGGTTTCGAAAGTAGCGGC
ATCAACGACGTTTGCTCGACAGGATTTGGCCCAGTTACGATCTGCTGGAA
AGTGGCTACGATATCTCGGAGTCAAAGGTTGCTATTTGTGGATTCACTCG
CTGACCAGAGAGGTGACAGCATTACGACCGGAGGACTACGAGGACAGTAA
TGCTCTCAGTGGGGGAGATAGTGAAGAAGATGTGGCCGGTAAGTGAGAGA
GGGAGTGAGTCAAGCGGGAGGCGCCGAAAATAAGTGTTATTACACTTTAC
GTGTTCTCCCACTCACTGCATTTGCCTCCGACATATGTACTATACACGCC
CCAGCGTCATCGATCGCTGTCAAGCTCCTAGGAACCCATGCTTTTGACAC
CATACCTATGCAAAACGTACTGCCGGGTCCCATCCGAATATAACACTTGA
AAGGATAAGAAACCTCTATTGACAGAGCTCTAATAGTGTATTTCTCACTT
GGGATTTTGACTACAGACATGAGGGCCATGAGCCGTTGTATATAAGAAAC
AAGTAACGTGTAAATCTAGAACATTTCAACCATGGATATGAGTCAAAAAT
GGATAATGCCAAAGTCCCCAATTCACGCGTCTTGTATAACTAACTGTCCT
CATCGCACCTCATCCTCAACGAACGGATGAACACAATATCTACGACTGCC
AAACTAATACTCGTCATTTTCAGGCTTGGTGTAGTAGAGCAAACAATCAA
AACGATGTAGAGCTCTGTGGCATCAAGGTGGTCGGGGGCTTGGTGCTACC
TCGAAAAGTCTCTCTTGGTTCCCCTCTGTATCCATACCCAGGTGGCTATC
CCTCTTGTCCTCTATTGGGCCTGCCGGATGCAATCAAGAGAATCATCGAC
CATGAAAAGAAAACCCCGCTGTTGATCGACAGCTCCGAAGATGGCAAGGT
CACGGCGTTCCTGTCATACAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig23808:161..1832-

>mRNA_H-paniculata_contig23808.6438.1 ID=mRNA_H-paniculata_contig23808.6438.1|Name=mRNA_H-paniculata_contig23808.6438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig23808:161..1832- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGAAGAAGAGAGGACTGATCTGGGCGCAGCCGTTCTGGCCGCGGC
TGTAGAGCGAGAGTCTGCTCAGCGGAGTGCGGTACCCAGTAGCGATGGGT
ACTTGAAATCATTTGGGGGCACCAAAGTCGATACAGAGATGAGCGAAGAA
GAGAGGACTGATCTGGGCGCAGCCGTTCTGGCCGCGGCTGTAGAGCGAGA
GTCTGCTCAGCGGAGTGCGGTACCCAGTAGCGATGGGTACTTGAAATCAT
TTGGGGGCACCAAAGTCGATACAGAGATGGAGAACGAATATGCAAGTATC
ATGCGGGGTGGAATGGGCACCGAGTCCGAAGAATGCCTACATCCAATATT
AAGGCGGGTCCACTGCGGTCATGGCCAGATGGAGAACGAATATGCAAGTA
TCATGCGGGGTGGAATGGGCACCGAGTCCGAAGAATGCCTACATCCAATA
TTAAGGCGGGTCCACTGCGGTCATGGCCAGGATTTGGCCCAGTTACGATC
TGCTGGAAAGTGGCTACGATATCTCGGAGTCAAAGGTTGCTATTTGTGGA
TTCACTCGCTGACCAGAGAGGTGACAGCATTACGACCGGAGGACTACGAG
GACAGTAATGCTCTCAGTGGGGGAGATAGTGAAGAAGATGTGGCCGGATT
TGGCCCAGTTACGATCTGCTGGAAAGTGGCTACGATATCTCGGAGTCAAA
GGTTGCTATTTGTGGATTCACTCGCTGACCAGAGAGGTGACAGCATTACG
ACCGGAGGACTACGAGGACAGTAATGCTCTCAGTGGGGGAGATAGTGAAG
AAGATGTGGCCGGTGGCTATCCCTCTTGTCCTCTATTGGGCCTGCCGGAT
GCAATCAAGAGAATCATCGACCATGAAAAGAAAACCCCGCTGTTGATCGA
CAGCTCCGAAGATGGCAAGGTCACGGCGTTCCTGTCATACAAGGTGGCTA
TCCCTCTTGTCCTCTATTGGGCCTGCCGGATGCAATCAAGAGAATCATCG
ACCATGAAAAGAAAACCCCGCTGTTGATCGACAGCTCCGAAGATGGCAAG
GTCACGGCGTTCCTGTCATACAAG
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