mRNA_H-paniculata_contig238.6437.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig238.6437.1
Unique NamemRNA_H-paniculata_contig238.6437.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig238.6437.1 vs. uniprot
Match: D7FV21_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV21_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 7.480e-48
Identity = 94/164 (57.32%), Postives = 109/164 (66.46%), Query Frame = 1 
Query:   31 QSWLQRQAALSTFDGYRQGESLSCVKPTAAPAPSSRRTDDNIPEAGGVSGIVYDPTDASADWSGFAPKHRLGRRM--AGQPTAHRETIARSEEHGIVPAPDAETQDCIRTRRRRCAQPETRYE-LILGGPTCTVLDTAQRFTTCARAANAHEPTPLELKSVKCR 513
            QSWLQ QA+ S FDGYR  +  S VK TAAPAP++       PEAG    +VYDP DASADWSGFAP+H  GRRM   G P AHRETI RSEEHGIVPA D  T+D ++TRRR  A P    E L+LGG      +  +RFTT ARAAN  E TPL++KS + R
Sbjct:   40 QSWLQEQASRSKFDGYRDSQQFSNVKVTAAPAPTACSA---APEAGRNGDVVYDPQDASADWSGFAPRHTAGRRMHHTGLPAAHRETIVRSEEHGIVPAADTVTEDSVKTRRRAVAHPPRAGEGLVLGGAGAP--EPRERFTTVARAANERESTPLDMKSEEFR 198
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig238.6437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV21_ECTSI7.480e-4857.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig238contigH-paniculata_contig238:29853..33085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size513
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig238.6437.1prot_H-paniculata_contig238.6437.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig238 29853..33085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.2442923-CDS-H-paniculata_contig238:29852..298851622929679.2442923-CDS-H-paniculata_contig238:29852..29885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 29853..29885 +
1691480964.0222862-CDS-H-paniculata_contig238:29852..298851691480964.0222862-CDS-H-paniculata_contig238:29852..29885Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 29853..29885 +
1622929679.260111-CDS-H-paniculata_contig238:30247..304961622929679.260111-CDS-H-paniculata_contig238:30247..30496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 30248..30496 +
1691480964.0341702-CDS-H-paniculata_contig238:30247..304961691480964.0341702-CDS-H-paniculata_contig238:30247..30496Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 30248..30496 +
1622929679.2749348-CDS-H-paniculata_contig238:32595..326941622929679.2749348-CDS-H-paniculata_contig238:32595..32694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 32596..32694 +
1691480964.0456676-CDS-H-paniculata_contig238:32595..326941691480964.0456676-CDS-H-paniculata_contig238:32595..32694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 32596..32694 +
1622929679.2940216-CDS-H-paniculata_contig238:32953..330851622929679.2940216-CDS-H-paniculata_contig238:32953..33085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 32954..33085 +
1691480964.0600054-CDS-H-paniculata_contig238:32953..330851691480964.0600054-CDS-H-paniculata_contig238:32953..33085Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 32954..33085 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig238.6437.1

>prot_H-paniculata_contig238.6437.1 ID=prot_H-paniculata_contig238.6437.1|Name=mRNA_H-paniculata_contig238.6437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=171bp
MRYPYHCTMKQSWLQRQAALSTFDGYRQGESLSCVKPTAAPAPSSRRTDD
NIPEAGGVSGIVYDPTDASADWSGFAPKHRLGRRMAGQPTAHRETIARSE
EHGIVPAPDAETQDCIRTRRRRCAQPETRYELILGGPTCTVLDTAQRFTT
CARAANAHEPTPLELKSVKCR
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mRNA from alignment at H-paniculata_contig238:29853..33085+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig238.6437.1 ID=mRNA_H-paniculata_contig238.6437.1|Name=mRNA_H-paniculata_contig238.6437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3233bp|location=Sequence derived from alignment at H-paniculata_contig238:29853..33085+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATATCCATACCATTGCACCATGAAGCAGGTGATGTATTCTCAAAT
CTTTGGTGTAACATGGAAAGCTAGTTGTTAGCCATATGTAGATCATAAGA
GGAGCTTGTGCTGTAGCCAAACATCGCGTTTCAACCCGAGACAAATTAAA
TCGTATGATAGCAAAAACCAGAACACGTACATATATACAGGAGAGGTTGC
TCGATCAACGAACTCTCCCGTACAACACGCCTGTTCTGTGTTTACTATGT
CTTCTCGTATCATAGTTTAGCCGAGGTTAACTCTAGAGCTGTCCGTACAG
CTTTCCGTAGTTTTCGCGCTTACGCGTGCATCGCAATATGTACGAACTGC
GCCTTGAAATCTGTAAACGTGTCCTGGTGTGTCAACATGTGACAGTCTTG
GCTGCAGCGGCAAGCTGCTTTGAGCACGTTCGACGGGTATAGACAGGGCG
AATCGCTCTCGTGCGTCAAGCCTACTGCGGCTCCCGCACCATCTTCTCGG
CGTACTGATGACAACATTCCAGAGGCGGGGGGGGTGTCTGGTATTGTGTA
CGATCCTACAGATGCTTCGGCTGACTGGTCAGGCTTCGCTCCGAAGCATA
GACTTGGCCGTCGAATGGCAGGACAACCAACGGCGCATCGAGAGGTGAAA
GTATAAAAGTAGAGGAATTACCTCTGTACGAAATAGCCTGTGCCGTTGCT
GCTGCAGCGCTCCCCCGATATAAGGCCTTTCGGAGCGAAACGCGGAAAAA
TAAATGGGGATCGGCGTCTTACCGCCGAATTGGTTTTGCCGGAAACAGAG
AGCCGTGCAGGCGATGATTCGGCACAAAGTCAAGGGTTGTGGATCGATGC
CAGGAACACTCACTGTACTGCGTATGCTTTGTCGGATTTCTCGGGAACTA
CCAGCGCTAGTGGAAAGGGGAGACCTTTTTTTCGCAATGCTCTGTCGAGC
GTACGTGCAAAGTTTCAGCTCTGAACTCGTCAAGTTTGCCTCGCAAACGT
CGAAAACCGCACCCCGCCGCTGGTATATGTCATTTATATAGCATGCTAGT
ATAGACATGACCGTCACGTGGCGATTTGTCCGGAGCGAAGATCCATATTG
AGAAGGGGAGAAAACACCTATTTTTTTTGTTATGTTGAACATCCCTGCGA
AGTTACACCTTAAAATTCGTGAAATTCTGTTCTAAAACGTCGAAAACTGC
ACACCGTCGTTTGTATACTACGTGGAACATCATTTATATAGTATATGGGT
ATGGGCATGGAAAGGAGGGATAGTTCCCGATGTATCGGGAACTAGGATCG
ATCGATGTTGGACGGGGGGACAAAAGGGATTTTTCGTATCTTTATTTGGA
ACCTATGTCAATTTCCGTGGGGACAATCCGCCGGCTCAAAAATTCTGCTC
TAGGACATGTGGCCCAGCCCCCCCGCCTTCACTCCCTCCCATTCATATAT
AAATATTTATATGTGTGTGTGTGTGTGTGTGTGTGTGTATACACTCGTGC
AAATATAATTCTGGTGATGAAATGCTGCTCCATATCCACCATGTTCCGGT
GGTCCTTGAGTTCCTTCACTCTGTGTACTCTTTTTGCATTGCAATTTATA
TACCGATGTTCCTGGGAAACGCTTATGGCGACGGACAGTTGGCAATCACG
GTGCACAGACGCACCAAGATATCAAAATTTAAGAAGCAACCCTCCCATTT
TGATGGACTTCAAAATGCAGACTACGGTGTCTTTACGGTAGTGGACATAC
AAACGTGTCAGGGCAACGACAACGTGACTGCGAACGAGATGTGGAAGCGT
TGCACGTGCGCACATCGGCGCTTTCCCTCTCATCACGACAGACAGTTGAG
GAGCGAGAGGCAGAGATGCACATTGTTGTCAAATTCAAAATTTCATACTT
CGAAACATTGCCCTTGGATGTTGATGGACCTCCAAAGTATAAATTGTTCT
CACTGTAGTGGGCTACAAACACAGAAACCCAACCGTAAACAAATATGAAC
ACCTACCAGACAGGTAAACTAGTTTTCTTTCATCAACGCATCAGCACTTC
TCACCTGTCTTGACTGGAGTTCGAGGCAGTGAGCATTCGAACCGGGCTCC
TGTACCTTTTGAACGGAGCGGTGTGCAGGAACCCAATAACGACGGCTTGG
TGCGTATTGTTGATAATACTGCTATACACAGTGGTCTTCTGTTAACCGTG
CACACGCAATAACCTACCCAGCACACACAACAATGTTGACACCAGGAATT
TTGTTATCGCTTATGGTCGCGCTGGCGCTCCTGGGGCGTGCTGTTATTGA
ATGACGAAAAGAGGCTTAATGTGGGCACCAAACATCGGTCACATTTTGGG
AAGACATCTCCTTGTTGATGGTTGCCACTAGCACTACACCAGTGTCGTGC
GGCACCTACACAAGTTATCATTATTTGTAATGCTGGGATACCCCCCAGCA
TCAAATACACCACCTTGACGTTGTCTTGTCTTGAACTTTATGTCGATGTA
TGGTTTGTGTTACTTTCTCTCCGTACACGGGGAAAAAACCTCGAGAAACG
AAATCTTGCGGTTCTTCAGGGAAGCATCCTGTCATACAGTAATGGAAACT
GTGGAGTGTTCCCCTGGTTTTCGGTTGATAGCCATACGTCACAGCGGTAC
CTTTTGTTGTAACGCTCCTTTTTCGTCATCTGTATTGCTTCATTTAACAG
CCGTCTAATGAACACAATGTCGATTGGTCGTGCGTGTCAACAGACGATCG
CTAGGTCAGAGGAGCACGGCATCGTACCGGCGCCGGACGCGGAGACCCAA
GATTGTATTCGGACCCGTAGGAGGCGCTGCGCGCAGCCTGAGGTGCGTCG
GATTGCACACTTGCTATGGCAGTGTCGTATAAATATACCACAAGGTGTAC
AAGAGATACAGTAGAGACGCCATCCCTCGTTCGAAACAGCTCAGAAATGT
TATGCGCATACATGTAGCCAGATCTCGTTATAGAGGTTGGCGGATCGAAT
TAGCTTTTGGTTAATGTCTGTGGCGGTTCTTCAGCCACAGCGCAGAAATA
ATGCTCGTTCTAAGAGTCCTAGTGGCCACTTTCTCTTTGATATGTGAACA
GACAAGATATGAGCTTATACTCGGAGGACCTACATGTACCGTGTTGGATA
CCGCACAACGATTCACGACCTGCGCTCGAGCAGCCAATGCTCACGAGCCC
ACTCCATTGGAGCTGAAGAGCGTCAAATGCAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig238:29853..33085+

>mRNA_H-paniculata_contig238.6437.1 ID=mRNA_H-paniculata_contig238.6437.1|Name=mRNA_H-paniculata_contig238.6437.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at H-paniculata_contig238:29853..33085+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGATATCCATACCATTGCACCATGAAGCAGATGAGATATCCATACCA
TTGCACCATGAAGCAGTCTTGGCTGCAGCGGCAAGCTGCTTTGAGCACGT
TCGACGGGTATAGACAGGGCGAATCGCTCTCGTGCGTCAAGCCTACTGCG
GCTCCCGCACCATCTTCTCGGCGTACTGATGACAACATTCCAGAGGCGGG
GGGGGTGTCTGGTATTGTGTACGATCCTACAGATGCTTCGGCTGACTGGT
CAGGCTTCGCTCCGAAGCATAGACTTGGCCGTCGAATGGCAGGACAACCA
ACGGCGCATCGAGAGTCTTGGCTGCAGCGGCAAGCTGCTTTGAGCACGTT
CGACGGGTATAGACAGGGCGAATCGCTCTCGTGCGTCAAGCCTACTGCGG
CTCCCGCACCATCTTCTCGGCGTACTGATGACAACATTCCAGAGGCGGGG
GGGGTGTCTGGTATTGTGTACGATCCTACAGATGCTTCGGCTGACTGGTC
AGGCTTCGCTCCGAAGCATAGACTTGGCCGTCGAATGGCAGGACAACCAA
CGGCGCATCGAGAGACGATCGCTAGGTCAGAGGAGCACGGCATCGTACCG
GCGCCGGACGCGGAGACCCAAGATTGTATTCGGACCCGTAGGAGGCGCTG
CGCGCAGCCTGAGACGATCGCTAGGTCAGAGGAGCACGGCATCGTACCGG
CGCCGGACGCGGAGACCCAAGATTGTATTCGGACCCGTAGGAGGCGCTGC
GCGCAGCCTGAGACAAGATATGAGCTTATACTCGGAGGACCTACATGTAC
CGTGTTGGATACCGCACAACGATTCACGACCTGCGCTCGAGCAGCCAATG
CTCACGAGCCCACTCCATTGGAGCTGAAGAGCGTCAAATGCAGGACAAGA
TATGAGCTTATACTCGGAGGACCTACATGTACCGTGTTGGATACCGCACA
ACGATTCACGACCTGCGCTCGAGCAGCCAATGCTCACGAGCCCACTCCAT
TGGAGCTGAAGAGCGTCAAATGCAGG
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