mRNA_H-paniculata_contig238.6432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig238.6432.1
Unique NamemRNA_H-paniculata_contig238.6432.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig238.6432.1 vs. uniprot
Match: D7FV24_ECTSI (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV24_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 9.890e-48
Identity = 76/94 (80.85%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   13 LQVGLRWWSNVREDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPLLWFGLLMLSLIRLKFNWMVIVITALLLSGANIYGYTKCNADAKNKVR 294
            +QVGLRWWSNV+EDGTTEWVFESLEDMSEI+SADYKLFWIGLYGTP+LW  LL+  ++ LKF W+VIV+ ALLLSGANIYGYTKCNADAK KV+
Sbjct:   59 VQVGLRWWSNVKEDGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADAKVKVQ 152
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BLAST of mRNA_H-paniculata_contig238.6432.1 vs. uniprot
Match: A0A6H5KM82_9PHAE (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM82_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 9.470e-45
Identity = 76/98 (77.55%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:    1 VFGLLQVGLRWWSNVREDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPLLWFGLLMLSLIRLKFNWMVIVITALLLSGANIYGYTKCNADAKNKVR 294
            V G L VGLRWWSNV  DGTTEWVFESLEDMSEI+SADYKLFWIGLYGTP+LW  LL+  ++ LKF W+VIV+ ALLLSGANIYGYTKCNAD+K KV+
Sbjct:  212 VSGRLMVGLRWWSNVTADGTTEWVFESLEDMSEINSADYKLFWIGLYGTPVLWVCLLVTGIMLLKFQWLVIVVIALLLSGANIYGYTKCNADSKVKVQ 309
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BLAST of mRNA_H-paniculata_contig238.6432.1 vs. uniprot
Match: A0A835Z0U0_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U0_9STRA)

HSP 1 Score: 137 bits (345), Expect = 2.190e-38
Identity = 63/99 (63.64%), Postives = 77/99 (77.78%), Query Frame = 1 
Query:    1 VFGLLQVGLRWWSNVREDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPLLWFGLLMLSLIRLKFNWMVIVITALLLSGANIYGYTKCNADAKNKVRS 297
            + G L VGLRWWSNV+EDGTT WVFESLE+MSEI  AD KLFWIGLY  P +W  L ++ L++    W++IV+ A+LLS ANI GYTKC+ DAKNKVR+
Sbjct:  105 ITGRLMVGLRWWSNVKEDGTTSWVFESLENMSEIQPADSKLFWIGLYAAPAVWVALFIIGLLKFNLQWLIIVVVAILLSTANIVGYTKCSNDAKNKVRN 203
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BLAST of mRNA_H-paniculata_contig238.6432.1 vs. uniprot
Match: A0A7S2V0N0_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0N0_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.030e-37
Identity = 60/98 (61.22%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    1 VFGLLQVGLRWWSNVREDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPLLWFGLLMLSLIRLKFNWMVIVITALLLSGANIYGYTKCNADAKNKVR 294
            V G L VGLRWW+NV+EDGTTEW FESLEDM+E+SSAD +LFW+G+YG PL W  + ++ L++L F W++IV+ AL L+GANI GY KC+ DA+ K+R
Sbjct:   64 VSGRLLVGLRWWNNVKEDGTTEWRFESLEDMTEVSSADSRLFWLGMYGAPLAWLVVFIVDLLKLNFQWLIIVVVALTLNGANIVGYIKCSNDARQKLR 161
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BLAST of mRNA_H-paniculata_contig238.6432.1 vs. uniprot
Match: A0A485KG22_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KG22_9STRA)

HSP 1 Score: 127 bits (320), Expect = 1.440e-34
Identity = 58/99 (58.59%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 VFGLLQVGLRWWSNVREDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPLLWFGLLMLSLIRLKFNWMVIVITALLLSGANIYGYTKCNADAKNKVRS 297
            V G L VGLRWW+ + EDG+ EWVFESLEDMSEI   D K+FW GLYG P++W   L++++++L   W +I I AL LSGAN+ GYTKC+ DAKNK++S
Sbjct:  108 VSGRLLVGLRWWNRINEDGSNEWVFESLEDMSEIDPLDAKIFWTGLYGAPVVWVLFLLIAVLKLNVEWALIAIVALTLSGANVVGYTKCSKDAKNKMQS 206
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BLAST of mRNA_H-paniculata_contig238.6432.1 vs. uniprot
Match: A0A6V1M0B7_HETAK (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M0B7_HETAK)

HSP 1 Score: 125 bits (313), Expect = 1.300e-33
Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 1 
Query:    1 VFGLLQVGLRWWSNVREDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPLLWFGLLMLSLIRLKFNWMVIVITALLLSGANIYGYTKCNADAKNKVR 294
            V G L VGLRWWS+V EDG T+WVFESLED+ E+ + D +LFW+GLY TP  W  L ++ L++    W+++V+ AL LSGANI GYTKC  DAK K++
Sbjct:   98 VTGRLLVGLRWWSHVSEDGKTDWVFESLEDLGEVHAGDARLFWLGLYATPAAWAALFVIGLLKFNLQWLIVVVVALALSGANIIGYTKCRKDAKQKLQ 195
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BLAST of mRNA_H-paniculata_contig238.6432.1 vs. uniprot
Match: A0A1V9YG20_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YG20_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.860e-32
Identity = 54/99 (54.55%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 VFGLLQVGLRWWSNVREDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPLLWFGLLMLSLIRLKFNWMVIVITALLLSGANIYGYTKCNADAKNKVRS 297
            V G L VGLRWW+ + EDGT+EW+FES EDM+E+   D K+FW GLYG P +W   L++++++    W +I I AL+LS ANI GYTKC+ DAKNK++S
Sbjct:  106 VSGRLLVGLRWWNRINEDGTSEWIFESHEDMTEVDPLDAKVFWTGLYGAPCIWALFLLIAVLKFNLEWALIAIVALMLSAANIVGYTKCSKDAKNKMKS 204
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BLAST of mRNA_H-paniculata_contig238.6432.1 vs. uniprot
Match: A0A6G0W9V7_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W9V7_9STRA)

HSP 1 Score: 122 bits (305), Expect = 2.380e-32
Identity = 53/99 (53.54%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 VFGLLQVGLRWWSNVREDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPLLWFGLLMLSLIRLKFNWMVIVITALLLSGANIYGYTKCNADAKNKVRS 297
            + G L VGLRWW+ + EDG+ EW+FESLEDMSEI   D ++FW  LYG P++W   L++++++    W +I I AL LSGAN+ GYTKC+ DAK+K+RS
Sbjct:  105 ISGRLLVGLRWWNRINEDGSNEWIFESLEDMSEIDPLDARIFWTSLYGAPVVWAFFLLIAILKFNVEWALIAIVALTLSGANVVGYTKCSKDAKDKMRS 203
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BLAST of mRNA_H-paniculata_contig238.6432.1 vs. uniprot
Match: A0A662XBB3_9STRA (Golgi apparatus membrane protein TVP23 homolog n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBB3_9STRA)

HSP 1 Score: 120 bits (302), Expect = 3.110e-32
Identity = 55/99 (55.56%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 VFGLLQVGLRWWSNVREDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPLLWFGLLMLSLIRLKFNWMVIVITALLLSGANIYGYTKCNADAKNKVRS 297
            V G L VGLRWW+ + EDGT+EWVFES EDM+EI   D ++FW GLYG+P LW  LL++++++    W +IV+ A+ LSGANI GYT+C  DAK K++S
Sbjct:   74 VTGRLLVGLRWWNRINEDGTSEWVFESHEDMTEIDPLDSRVFWTGLYGSPALWMLLLIVAVLKFNVQWALIVLVAVALSGANIIGYTRCKKDAKQKMQS 172
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BLAST of mRNA_H-paniculata_contig238.6432.1 vs. uniprot
Match: T0R4T1_SAPDV (Golgi apparatus membrane protein TVP23 homolog n=3 Tax=Saprolegnia TaxID=4769 RepID=T0R4T1_SAPDV)

HSP 1 Score: 121 bits (303), Expect = 4.760e-32
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 VFGLLQVGLRWWSNVREDGTTEWVFESLEDMSEISSADYKLFWIGLYGTPLLWFGLLMLSLIRLKFNWMVIVITALLLSGANIYGYTKCNADAKNKVRS 297
            V G L VGLRWW+ V EDGT+EW+FES EDM+E+   D K+FW GLYG P +W   L++++++    W +I I AL+LS ANI GYTKC+ DAKNK++S
Sbjct:  106 VSGRLLVGLRWWNRVNEDGTSEWIFESHEDMTELDPLDAKVFWTGLYGAPGVWVLFLLIAVLKFNLEWALIAIVALMLSAANIVGYTKCSKDAKNKMKS 204
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig238.6432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV24_ECTSI9.890e-4880.85Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A6H5KM82_9PHAE9.470e-4577.55Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A835Z0U0_9STRA2.190e-3863.64Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A7S2V0N0_9STRA1.030e-3761.22Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A485KG22_9STRA1.440e-3458.59Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A6V1M0B7_HETAK1.300e-3356.12Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A1V9YG20_9STRA1.860e-3254.55Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A6G0W9V7_9STRA2.380e-3253.54Golgi apparatus membrane protein TVP23 homolog n=1... [more]
A0A662XBB3_9STRA3.110e-3255.56Golgi apparatus membrane protein TVP23 homolog n=1... [more]
T0R4T1_SAPDV4.760e-3255.56Golgi apparatus membrane protein TVP23 homolog n=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig238contigH-paniculata_contig238:913..1893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue8.3e-37
Seed eggNOG ortholog2880.D7FV24
Preferred nameTVP23A
Hectar predicted targeting categorysignal anchor
GOsGO:0000139,GO:0000902,GO:0002790,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005802,GO:0006810,GO:0006996,GO:0007030,GO:0008104,GO:0008150,GO:0009306,GO:0009653,GO:0009826,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016049,GO:0016192,GO:0030173,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031901,GO:0031982,GO:0031984,GO:0032502,GO:0032588,GO:0032940,GO:0032989,GO:0033036,GO:0040007,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0048589,GO:0048856,GO:0048869,GO:0051179,GO:0051234,GO:0060560,GO:0071702,GO:0071705,GO:0071840,GO:0097708,GO:0098588,GO:0098791,GO:0098805
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG3195@1,KOG3195@2759
Ec32 ortholog descriptionProtein of unknown function DUF846, eukaryotic
Ec32 orthologEc-14_003890.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.4763575-CDS-H-paniculata_contig238:912..11131622929678.4763575-CDS-H-paniculata_contig238:912..1113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 913..1113 +
1691480963.6053584-CDS-H-paniculata_contig238:912..11131691480963.6053584-CDS-H-paniculata_contig238:912..1113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 913..1113 +
1622929678.492441-CDS-H-paniculata_contig238:1797..18931622929678.492441-CDS-H-paniculata_contig238:1797..1893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 1798..1893 +
1691480963.6173055-CDS-H-paniculata_contig238:1797..18931691480963.6173055-CDS-H-paniculata_contig238:1797..1893Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 1798..1893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig238.6432.1prot_H-paniculata_contig238.6432.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig238 913..1893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig238.6432.1

>prot_H-paniculata_contig238.6432.1 ID=prot_H-paniculata_contig238.6432.1|Name=mRNA_H-paniculata_contig238.6432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
VFGLLQVGLRWWSNVREDGTTEWVFESLEDMSEISSADYKLFWIGLYGTP
LLWFGLLMLSLIRLKFNWMVIVITALLLSGANIYGYTKCNADAKNKVRS
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mRNA from alignment at H-paniculata_contig238:913..1893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig238.6432.1 ID=mRNA_H-paniculata_contig238.6432.1|Name=mRNA_H-paniculata_contig238.6432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=981bp|location=Sequence derived from alignment at H-paniculata_contig238:913..1893+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTTGGGCTGTTACAGGTTGGACTACGATGGTGGAGCAACGTGAGGGA
AGACGGTACGACGGAGTGGGTGTTCGAGTCCCTGGAGGACATGAGCGAGA
TCAGCAGCGCCGACTACAAGTTATTCTGGATCGGCCTGTATGGCACACCT
CTCCTGTGGTTCGGTCTCTTGATGTTATCGTTAATCAGACTCAAATTTAA
TGTGCGTGTTGCTGCGAGCTGGTGCTACGGGGTGTTATTGTCATTGCGTC
ATTAGGCGGGTGGGGCCGGTGGGCAAGGAGGGATCCAACTACTCACTGTT
GCATTAAATAATAAGATAGTTAATTATAATACCAAGATGATATTTAAGCT
GTTTTTTTTACTTGTAGCTTGATGAGGATAAGATATGCGGAGGCATCTTG
TTTTACGTAGCGTCAATTATCGGGGTACGCCAATTGGGTGTTTAACGCCG
CCGTGATTACAGATAGCAGATTTGTCGTAGGAGGAGCGCGGTGTCGCTTG
TTGTAGGCGTAGGAGTAATGTTTCTGACTGCTTTTTCAAGAATGGAAGGG
CCAGACGTTCCTCGTTTATTCGACTGGAGTACATCTGTGCAGGACGGATT
CAGGCTAAACGCCGGAGGTTTACAACAACGCCTTTGACACAAAAGCGATA
CGCGATAACACCCACCCTTGGTGACCTTGGGGAAGTGTACAAGTGGTGTG
GAAGCAGAGCGGACGGGAATACCTAGTCTGAGTCTAATAGTATTTTCTCA
GCCCACTGTGGTATTAGCAGTTGATGAAGTGCGGGGGTCACTTTTTTCTC
TTACGCCTCGTGTGCTGTAGAGCTCTAACGCTGTGCTTTTCATGCCGTGC
TTGTGAATCAAAATGTGTGATGCGTGTCAACGCAGTGGATGGTGATCGTC
ATCACCGCACTGCTGTTGAGCGGAGCTAACATCTATGGCTACACGAAGTG
CAACGCCGACGCTAAGAACAAGGTAAGGAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig238:913..1893+

>mRNA_H-paniculata_contig238.6432.1 ID=mRNA_H-paniculata_contig238.6432.1|Name=mRNA_H-paniculata_contig238.6432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig238:913..1893+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTTTGGGCTGTTACAGGTTGGACTACGATGGTGGAGCAACGTGAGGGA
AGACGGTACGACGGAGTGGGTGTTCGAGTCCCTGGAGGACATGAGCGAGA
TCAGCAGCGCCGACTACAAGTTATTCTGGATCGGCCTGTATGGCACACCT
CTCCTGTGGTTCGGTCTCTTGATGTTATCGTTAATCAGACTCAAATTTAA
TGTGTTTGGGCTGTTACAGGTTGGACTACGATGGTGGAGCAACGTGAGGG
AAGACGGTACGACGGAGTGGGTGTTCGAGTCCCTGGAGGACATGAGCGAG
ATCAGCAGCGCCGACTACAAGTTATTCTGGATCGGCCTGTATGGCACACC
TCTCCTGTGGTTCGGTCTCTTGATGTTATCGTTAATCAGACTCAAATTTA
ATTGGATGGTGATCGTCATCACCGCACTGCTGTTGAGCGGAGCTAACATC
TATGGCTACACGAAGTGCAACGCCGACGCTAAGAACAAGGTAAGGAGTTG
GATGGTGATCGTCATCACCGCACTGCTGTTGAGCGGAGCTAACATCTATG
GCTACACGAAGTGCAACGCCGACGCTAAGAACAAGGTAAGGAGT
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