mRNA_H-paniculata_contig238.6434.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig238.6434.1
Unique NamemRNA_H-paniculata_contig238.6434.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig238.6434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig238contigH-paniculata_contig238:20759..22074 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1316
Cds size789
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig238.6434.1prot_H-paniculata_contig238.6434.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig238 20846..21634 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.3980017-UTR-H-paniculata_contig238:20758..208451622929678.3980017-UTR-H-paniculata_contig238:20758..20845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig238 20759..20845 +
1691480963.569438-UTR-H-paniculata_contig238:20758..208451691480963.569438-UTR-H-paniculata_contig238:20758..20845Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig238 20759..20845 +
1622929678.423553-UTR-H-paniculata_contig238:21634..220741622929678.423553-UTR-H-paniculata_contig238:21634..22074Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig238 21635..22074 +
1691480963.5893226-UTR-H-paniculata_contig238:21634..220741691480963.5893226-UTR-H-paniculata_contig238:21634..22074Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig238 21635..22074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.4102643-CDS-H-paniculata_contig238:20845..216341622929678.4102643-CDS-H-paniculata_contig238:20845..21634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 20846..21634 +
1691480963.5809047-CDS-H-paniculata_contig238:20845..216341691480963.5809047-CDS-H-paniculata_contig238:20845..21634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 20846..21634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig238.6434.1

>prot_H-paniculata_contig238.6434.1 ID=prot_H-paniculata_contig238.6434.1|Name=mRNA_H-paniculata_contig238.6434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=263bp
MSRLVRSSSAPTQTCPPRKRQRRQQQQPVVQRQQQMQRPFLPTHVRLLEA
LYANDDLEGALMDDKVKNRRAPPLWAKIHSFIDKQGVIADIDKQRQRATA
ILRTLGGSTTCDRTVGEDDLQRDRPDLRPAAQEAETGMATPTPRPHHVPR
SQDFHFSHTQRFRPAAVVSGVLRRAAKDRRIERNAEYAALADLKLAVKRT
VDELDSSLGALSRAQNDSCAATWNRRREEDMTAADVIECKGTKLLLWRKL
QSSILALDVPTL*
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mRNA from alignment at H-paniculata_contig238:20759..22074+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig238.6434.1 ID=mRNA_H-paniculata_contig238.6434.1|Name=mRNA_H-paniculata_contig238.6434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1316bp|location=Sequence derived from alignment at H-paniculata_contig238:20759..22074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCACCCCCGCTATCACCTGCTCGTTGCTGGCTGCCTACCTGCGTCATT
TCACCGTGTCCTTATCCCCAATCATAGATAATATTTTATGTCTCGTCTGG
TGCGGTCATCTTCCGCGCCCACCCAAACATGTCCACCTCGAAAGCGACAG
CGTCGACAACAACAGCAGCCAGTAGTGCAACGACAACAGCAAATGCAACG
ACCATTTTTACCAACTCACGTGCGTCTCCTCGAAGCGCTTTATGCCAACG
ACGACCTGGAGGGAGCACTAATGGACGACAAGGTGAAGAACCGCCGCGCT
CCACCTTTGTGGGCGAAGATACATAGCTTCATAGACAAACAAGGCGTAAT
CGCCGATATTGACAAGCAAAGGCAACGGGCAACGGCAATTCTCAGGACTT
TAGGAGGATCTACCACATGCGACCGAACTGTCGGCGAGGATGACCTACAG
CGTGACCGTCCTGATTTGCGACCCGCCGCACAAGAAGCGGAGACAGGGAT
GGCAACGCCAACTCCTCGGCCCCACCACGTTCCGAGGAGTCAGGATTTTC
ATTTTTCCCACACACAACGATTCCGCCCTGCTGCCGTGGTTTCTGGCGTG
CTGCGCAGGGCGGCGAAAGACCGTCGAATCGAGCGCAACGCGGAATATGC
CGCCCTAGCCGACCTCAAACTCGCTGTGAAGAGGACGGTAGACGAGTTAG
ATAGCTCTTTGGGAGCACTGTCGCGAGCGCAGAACGATTCTTGCGCGGCA
ACATGGAACAGGAGGCGTGAAGAGGACATGACTGCCGCGGATGTGATCGA
ATGCAAAGGTACCAAGCTGCTGCTATGGCGGAAACTGCAGTCATCGATAT
TGGCGTTAGACGTGCCAACATTGTAACGGTCACCGACACCAGAGACAGAA
CGGCCGGGTGCAGAGTTGATTGTTTGGAGGGTGCATATGACGAACTCTTA
CTTGAGCGGGAAAACAGGGCGTGCTATCCGGTATTCACTCCATGTTCAAC
TATCAAATAACTAGCTCTGATCCGGGCGGGAGGAGGAGTGTCCCATAGCG
GAGTCAATACGCAAGTAAATCGAGGCTGTTCCCTGGTGGTGCACACGTCC
GAGGTTCGAAATGGTTCATTCACTGGCAGCAGCTTGATTCAGCGCTCGGT
GTCGATATAGAGCTTGAGTAGTGTGCCCCAGACTCGCACATCTTGGCTAG
CGCTTCCTAGAGTAGGTGTGGGGTAAGTCAGCAGTGTATAGGATCGTGAA
GTTGTTAACAAATGAATCCCAACGCACCCGCGGTTGTAACACCCCTCTAT
GTAATATCTTGTGAAC
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Coding sequence (CDS) from alignment at H-paniculata_contig238:20759..22074+

>mRNA_H-paniculata_contig238.6434.1 ID=mRNA_H-paniculata_contig238.6434.1|Name=mRNA_H-paniculata_contig238.6434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1578bp|location=Sequence derived from alignment at H-paniculata_contig238:20759..22074+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCGTCTGGTGCGGTCATCTTCCGCGCCCACCCAAACATGTCCACC
TCGAAAGCGACAGCGTCGACAACAACAGCAGCCAGTAGTGCAACGACAAC
AGCAAATGCAACGACCATTTTTACCAACTCACGTGCGTCTCCTCGAAGCG
CTTTATGCCAACGACGACCTGGAGGGAGCACTAATGGACGACAAGGTGAA
GAACCGCCGCGCTCCACCTTTGTGGGCGAAGATACATAGCTTCATAGACA
AACAAGGCGTAATCGCCGATATTGACAAGCAAAGGCAACGGGCAACGGCA
ATTCTCAGGACTTTAGGAGGATCTACCACATGCGACCGAACTGTCGGCGA
GGATGACCTACAGCGTGACCGTCCTGATTTGCGACCCGCCGCACAAGAAG
CGGAGACAGGGATGGCAACGCCAACTCCTCGGCCCCACCACGTTCCGAGG
AGTCAGGATTTTCATTTTTCCCACACACAACGATTCCGCCCTGCTGCCGT
GGTTTCTGGCGTGCTGCGCAGGGCGGCGAAAGACCGTCGAATCGAGCGCA
ACGCGGAATATGCCGCCCTAGCCGACCTCAAACTCGCTGTGAAGAGGACG
GTAGACGAGTTAGATAGCTCTTTGGGAGCACTGTCGCGAGCGCAGAACGA
TTCTTGCGCGGCAACATGGAACAGGAGGCGTGAAGAGGACATGACTGCCG
CGGATGTGATCGAATGCAAAGGTACCAAGCTGCTGCTATGGCGGAAACTG
CAGTCATCGATATTGGCGTTAGACGTGCCAACATTGTAAATGTCTCGTCT
GGTGCGGTCATCTTCCGCGCCCACCCAAACATGTCCACCTCGAAAGCGAC
AGCGTCGACAACAACAGCAGCCAGTAGTGCAACGACAACAGCAAATGCAA
CGACCATTTTTACCAACTCACGTGCGTCTCCTCGAAGCGCTTTATGCCAA
CGACGACCTGGAGGGAGCACTAATGGACGACAAGGTGAAGAACCGCCGCG
CTCCACCTTTGTGGGCGAAGATACATAGCTTCATAGACAAACAAGGCGTA
ATCGCCGATATTGACAAGCAAAGGCAACGGGCAACGGCAATTCTCAGGAC
TTTAGGAGGATCTACCACATGCGACCGAACTGTCGGCGAGGATGACCTAC
AGCGTGACCGTCCTGATTTGCGACCCGCCGCACAAGAAGCGGAGACAGGG
ATGGCAACGCCAACTCCTCGGCCCCACCACGTTCCGAGGAGTCAGGATTT
TCATTTTTCCCACACACAACGATTCCGCCCTGCTGCCGTGGTTTCTGGCG
TGCTGCGCAGGGCGGCGAAAGACCGTCGAATCGAGCGCAACGCGGAATAT
GCCGCCCTAGCCGACCTCAAACTCGCTGTGAAGAGGACGGTAGACGAGTT
AGATAGCTCTTTGGGAGCACTGTCGCGAGCGCAGAACGATTCTTGCGCGG
CAACATGGAACAGGAGGCGTGAAGAGGACATGACTGCCGCGGATGTGATC
GAATGCAAAGGTACCAAGCTGCTGCTATGGCGGAAACTGCAGTCATCGAT
ATTGGCGTTAGACGTGCCAACATTGTAA
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