mRNA_H-paniculata_contig238.6436.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig238.6436.1
Unique NamemRNA_H-paniculata_contig238.6436.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig238.6436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig238contigH-paniculata_contig238:27009..29726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size778
Cds size774
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.3511243-CDS-H-paniculata_contig238:27010..275521622929678.3511243-CDS-H-paniculata_contig238:27010..27552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 27011..27552 -
1691480963.548035-CDS-H-paniculata_contig238:27010..275521691480963.548035-CDS-H-paniculata_contig238:27010..27552Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 27011..27552 -
1622929678.362473-CDS-H-paniculata_contig238:29494..297261622929678.362473-CDS-H-paniculata_contig238:29494..29726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 29495..29726 -
1691480963.5589788-CDS-H-paniculata_contig238:29494..297261691480963.5589788-CDS-H-paniculata_contig238:29494..29726Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig238 29495..29726 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig238.6436.1prot_H-paniculata_contig238.6436.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig238 27011..29726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig238.6436.1

>prot_H-paniculata_contig238.6436.1 ID=prot_H-paniculata_contig238.6436.1|Name=mRNA_H-paniculata_contig238.6436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=258bp
LFVNSSRQRGQMPPTTPPVMDNEGGSIMHNNNSRESSNSSNSSNKHQHWP
PWRRSSLFSRAGETDEHKNEIPLQALRASGSRATSLVPVDPAHTEEADAG
GVSPPTSTSSPTSSSSSPTARTTAQYLPDPLSWPSTQELLPLRLSQHPSQ
DAPGFLAEHRDQPPSHTISSDQGSTAAVRNQSDHESVSNKLTAGVFKTRL
RADEQEDSQPASGTSASVWPPLFAKRQLSDGGLHKPAGEYMRGIEEAARA
WSARALTP
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mRNA from alignment at H-paniculata_contig238:27009..29726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig238.6436.1 ID=mRNA_H-paniculata_contig238.6436.1|Name=mRNA_H-paniculata_contig238.6436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2718bp|location=Sequence derived from alignment at H-paniculata_contig238:27009..29726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATTTGTAAACAGCTCCCGACAGCGTGGACAGATGCCGCCGACAACACC
ACCAGTTATGGACAATGAAGGAGGTAGTATCATGCATAACAACAACAGCA
GAGAGAGTAGCAACAGCAGCAACAGCAGCAACAAGCACCAGCATTGGCCT
CCCTGGAGAAGGTCGTCACTTTTTTCTAGAGCTGGGGAGACAGACGAACA
CAAGAATGAAATACCTCTGCAGGCCCTACGCGGTGAGTTAACATGTTGGC
CACCCCTGGCCTGTGTGCATGTCCAAAGCCTGAAACTGTAACACGCCCCA
AGTCAGTTGCATGTGTTGCTCGTATTGATATTGATTTGACGGGATTAGGC
GTTGCGGTTTGGGCAATCATGTGTTCGCAAGCTCGGAACATTTAGTGTCT
TCGATGTGCGGCCTAATGTCATGCCACAGCACGTCCGAGGTCACTATCCT
GAGAAAGGCATCCTCTTTGTAACTCCCTGTTCAATATACTAAAGCAACTG
TACAGAACCGACTGCTGCTGTCGGCAGTGTGTACCTCACCTTGGTTACTT
GGAGAGTAGTCAACGAACAAACGACGAGGAGTGATGTCTGCTCTGTGTGT
ATGTCTGGAATATTGGAATGTGTATGATCGCAAAATCAAGGAAGTACAGG
TGACACACAACATATAATAGGAGCGAGCGAGCGAGCGGGCGTGCAACCGG
TGGTCGGCCCGAGTTGGTCATATCGTTGGTGGCGTCGTGCTCCCGTATTG
ATTATTAAAGCAACAGCCAATATACGGCATGTTACCCGACAACTTTTTTT
TGTTAGGATGCCTCATCTACACCAGGCTGTAGAAACGATTTTGTCCGACA
GTCAGTATTTTTAGCAAATGCAAGATTTCACCCCTGGGGCAAATACAAAT
ACTTTTAAATAGAGTGTGCAAAAGGAATTCTATTTGAACATTTTGAGTTG
TAGAATCAGAATTTCCGTCGGTTCGAGATACAAATTCCTATCAAATCCAG
GTGCTGAAAACAAGCTTGCGCCAATCTGATGATCTGATCGTTATTTGATT
GGGGTACCCCCACTGTACGACTGGGTCCCCATTAGATTGTTGTATCTATC
CGGGCATCAGGCAAAACACATCTTGCGCTGTCACCATAGAGACCTCTGGG
ACCATGAAAGGTGTCAGCGGGACCACGAGCTTCATCTCCAGTGTCAGCAA
CGGTGGCTTCCAGCATAGCGGGCGGCAGTGTTGCCACGCTGGGCATAGCG
ACTGCCTCCACTTCTCCCATTAATATCAATTCGCCTGCACCTCCGACCGC
ACAGCCGGTCAAGCCGCCACGGTGGGCTCTACAACCTCAACCAGACAGAC
CGCGAGCAAGAGGGGCTACATCAAGTGGGATGACGCCATGAACATCGCTA
TCGCGCACCGCAAAAACCGAATCCGCACACGCTCCCGAGTCCACAGCGCC
CAACAGCGCCGATTGATCTGCAGTTCATCGATATTGCGTCGTCTCAAGCT
AGTCATTCTCGCATGCCGTTGTCCGCTGCCCAGATGATTTATCTAGGCCG
TGTGGTGTTGTGTGTTGGTTTGAAACAATTGGACTACTGTGCTGCGGCGG
GCATCTGCTAAGCATCGGGTTGTTTCTCGGGTTGTGTTGGCCAACCACAA
TGTGTTCCGAAAAATTTCCGTGCAGGCTTCAAGTTTCGATTTCAAATTTG
GGTTTGTTGATCACTTCTCTGAAATCCTCGGTTAACAATTCTTTAAAAAA
GAAATGGCGTCCCGTCAGTGACTGGAGAACAGACAATCAAAAAGTGAAAT
AGGATTATTTGTGCGCAAACACTCTCATGATTTGCACAAAAAACTGAAAG
TATTTGCCTGAGTTTCAGAATGAGCGCACACATCAAATAAAGTGCCCACG
CCTGTGCATTCGGTTTACAAGTATTATTAGCAGCCGTGGACGGTCCGAAG
CACGTAGAATACACGAGCTCATTCTAAAACTCAGGCGAATGCTTTCACTT
ATTTGTGACAACCATTTGCAAGTATTCGTAATTGTCCGGGGTGTGTAAGA
TTTACATCACGTATGATGACCCTCAATACCGCAGACTACTTTGTCGCAAC
CCGTGTCCCTAACTGCCTCAGCGTACATTCGCCTCCCTCTCTCTTTCTGA
CCTTTCTCTCGCTGCCTCTTCCAGCATCAGGCTCGAGAGCCACCAGTCTA
GTTCCTGTAGACCCTGCGCACACGGAGGAGGCAGATGCTGGAGGTGTATC
ACCTCCTACTTCCACGTCCTCGCCGACATCCTCCTCCTCGTCCCCTACAG
CACGCACCACTGCACAATATCTACCGGATCCCTTGAGCTGGCCTTCCACG
CAAGAATTGTTGCCTCTCCGACTATCACAACACCCGTCACAAGATGCCCC
CGGTTTTTTGGCGGAGCACCGTGATCAGCCTCCAAGCCATACTATCTCTT
CGGATCAAGGTAGCACGGCAGCCGTACGCAATCAAAGCGACCATGAGAGT
GTTAGTAACAAACTAACGGCGGGAGTCTTCAAGACCCGTCTCCGAGCAGA
CGAACAAGAGGACTCGCAACCGGCGAGTGGAACTAGCGCTAGCGTTTGGC
CGCCGCTATTTGCGAAGCGACAGCTCTCGGATGGCGGCTTGCATAAACCC
GCCGGAGAATACATGCGTGGCATCGAGGAGGCAGCACGTGCGTGGAGTGC
CCGCGCATTGACGCCTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig238:27009..29726-

>mRNA_H-paniculata_contig238.6436.1 ID=mRNA_H-paniculata_contig238.6436.1|Name=mRNA_H-paniculata_contig238.6436.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1548bp|location=Sequence derived from alignment at H-paniculata_contig238:27009..29726- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTATTTGTAAACAGCTCCCGACAGCGTGGACAGATGCCGCCGACAACACC
ACCAGTTATGGACAATGAAGGAGGTAGTATCATGCATAACAACAACAGCA
GAGAGAGTAGCAACAGCAGCAACAGCAGCAACAAGCACCAGCATTGGCCT
CCCTGGAGAAGGTCGTCACTTTTTTCTAGAGCTGGGGAGACAGACGAACA
CAAGAATGAAATACCTCTGCAGGCCCTACGCGCTATTTGTAAACAGCTCC
CGACAGCGTGGACAGATGCCGCCGACAACACCACCAGTTATGGACAATGA
AGGAGGTAGTATCATGCATAACAACAACAGCAGAGAGAGTAGCAACAGCA
GCAACAGCAGCAACAAGCACCAGCATTGGCCTCCCTGGAGAAGGTCGTCA
CTTTTTTCTAGAGCTGGGGAGACAGACGAACACAAGAATGAAATACCTCT
GCAGGCCCTACGCGCATCAGGCTCGAGAGCCACCAGTCTAGTTCCTGTAG
ACCCTGCGCACACGGAGGAGGCAGATGCTGGAGGTGTATCACCTCCTACT
TCCACGTCCTCGCCGACATCCTCCTCCTCGTCCCCTACAGCACGCACCAC
TGCACAATATCTACCGGATCCCTTGAGCTGGCCTTCCACGCAAGAATTGT
TGCCTCTCCGACTATCACAACACCCGTCACAAGATGCCCCCGGTTTTTTG
GCGGAGCACCGTGATCAGCCTCCAAGCCATACTATCTCTTCGGATCAAGG
TAGCACGGCAGCCGTACGCAATCAAAGCGACCATGAGAGTGTTAGTAACA
AACTAACGGCGGGAGTCTTCAAGACCCGTCTCCGAGCAGACGAACAAGAG
GACTCGCAACCGGCGAGTGGAACTAGCGCTAGCGTTTGGCCGCCGCTATT
TGCGAAGCGACAGCTCTCGGATGGCGGCTTGCATAAACCCGCCGGAGAAT
ACATGCGTGGCATCGAGGAGGCAGCACGTGCGTGGAGTGCCCGCGCATTG
ACGCCTCATCAGGCTCGAGAGCCACCAGTCTAGTTCCTGTAGACCCTGCG
CACACGGAGGAGGCAGATGCTGGAGGTGTATCACCTCCTACTTCCACGTC
CTCGCCGACATCCTCCTCCTCGTCCCCTACAGCACGCACCACTGCACAAT
ATCTACCGGATCCCTTGAGCTGGCCTTCCACGCAAGAATTGTTGCCTCTC
CGACTATCACAACACCCGTCACAAGATGCCCCCGGTTTTTTGGCGGAGCA
CCGTGATCAGCCTCCAAGCCATACTATCTCTTCGGATCAAGGTAGCACGG
CAGCCGTACGCAATCAAAGCGACCATGAGAGTGTTAGTAACAAACTAACG
GCGGGAGTCTTCAAGACCCGTCTCCGAGCAGACGAACAAGAGGACTCGCA
ACCGGCGAGTGGAACTAGCGCTAGCGTTTGGCCGCCGCTATTTGCGAAGC
GACAGCTCTCGGATGGCGGCTTGCATAAACCCGCCGGAGAATACATGCGT
GGCATCGAGGAGGCAGCACGTGCGTGGAGTGCCCGCGCATTGACGCCT
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