mRNA_H-paniculata_contig23786.6430.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23786.6430.1
Unique NamemRNA_H-paniculata_contig23786.6430.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23786.6430.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.550e-42
Identity = 79/146 (54.11%), Postives = 93/146 (63.70%), Query Frame = 1
Query:    7 ICAVSRPNASCDFDGKIGIWRICVIKQAQRSSTR-------------------RERG----QQYEFDVTIDAEWYQEWYKDSFLPALKEKMPWLEGEEVIAQKDEATPHTGKNTPRKLNELGRDGEWNFNLVTQPAQSPDLNINDL 375
            I A +RP+ + DFDGKIGIWRICVI+ AQRSS +                   R R     ++YEFD TIDAEWY++WY D  LPA+KEKMPWL  + V+ Q+D A+PHTGK  P  LN  G    W   LVTQPAQSPDLNINDL
Sbjct:  197 IVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDL 342          
BLAST of mRNA_H-paniculata_contig23786.6430.1 vs. uniprot
Match: UPI001C25717E (uncharacterized protein LOC121804947 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C25717E)

HSP 1 Score: 73.2 bits (178), Expect = 8.390e-13
Identity = 46/132 (34.85%), Postives = 71/132 (53.79%), Query Frame = 1
Query:    1 IFICAVSRPNASCD----FDGKIGIWRICVIKQAQRSSTRRERGQ-QYEFDVTIDAEWYQEWYKDSFLPALKEKMPWLEGEEVIAQKDEATPHTGKNTPRKLNELGRDGEWNFNLVTQPAQSPDLNINDLEF 381
            +F+ AVSRP    D    FDGKIGI+       A+R S  R RG  + +   +++ E  +E   +  +PA+K K P    +E+  Q+D ATPH   ++  +   L     + F+L++QP  SPD N+ DL+F
Sbjct:  101 MFMGAVSRPQFGTDGKTIFDGKIGIFPFTEQVPAKRKSKNRPRGTLEIKPIPSVNKEAMRECLLNQIIPAIKAKWPANASKEIYIQQDNATPHLN-SSDSQFEALSSSDGFKFHLISQPVNSPDTNLLDLDF 231          
BLAST of mRNA_H-paniculata_contig23786.6430.1 vs. uniprot
Match: UPI0007EF40B3 (uncharacterized protein LOC108194535 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF40B3)

HSP 1 Score: 73.2 bits (178), Expect = 1.440e-12
Identity = 48/132 (36.36%), Postives = 69/132 (52.27%), Query Frame = 1
Query:    1 IFICAVSRP----NASCDFDGKIGIWRICVIKQAQRSSTRRERGQ-QYEFDVTIDAEWYQEWYKDSFLPALKEKMPWLEGEEVIAQKDEATPHTGKNTPRKLNELGRDGEWNFNLVTQPAQSPDLNINDLEF 381
            +F+ AV+RP    + +C FDGKIGI+     + A RS   R RG  + +   +I     ++   +  +PA+K K P      ++ Q+D A PH   NT     E+ +   +N  L  QPA SPDLNINDL F
Sbjct:  226 MFMSAVARPRYDADGNCTFDGKIGIFPFTFDEPAARSIKNRARGVIEVKPIESITKVVIKQCLLEKIIPAIKAKWPLDCNRPIVIQQDNARPHIC-NTDLDFIEVAKSDGFNITLANQPANSPDLNINDLGF 356          
BLAST of mRNA_H-paniculata_contig23786.6430.1 vs. uniprot
Match: UPI000E70440D (uncharacterized protein LOC113337402 n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E70440D)

HSP 1 Score: 68.9 bits (167), Expect = 2.100e-11
Identity = 50/139 (35.97%), Postives = 67/139 (48.20%), Query Frame = 1
Query:    1 IFICAVSRPN----ASCDFDGKIGIWRICVIKQAQRSSTRRERGQQYEFDVTIDAEWYQEWYK--------DSFLPALKEKMPWLEGEEVIAQKDEATPHTGKNTPRKLNELGRDGEWNFNLVTQPAQSPDLNINDLEF 381
            +F+ AV+RP      +  FDGKIGIW    +  AQR+S  R  G       TI+    +   K        +  LPA+K+K P  +G  +  Q+D A PH    T R+  E  R    +  +  QPA SPDLN NDL F
Sbjct:   99 MFLSAVARPRFDAAGNVIFDGKIGIWAFVFMVAAQRTSKNRVAG-------TIEMRPMKSVTKIVTRSFLIEKLLPAIKQKWPH-DGSTIFVQQDNAKPHISI-TDREFCEAVRQSGMDVQMCFQPANSPDLNTNDLGF 228          
BLAST of mRNA_H-paniculata_contig23786.6430.1 vs. uniprot
Match: UPI00053FA15F (uncharacterized protein LOC104905014 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FA15F)

HSP 1 Score: 68.6 bits (166), Expect = 6.060e-11
Identity = 46/132 (34.85%), Postives = 67/132 (50.76%), Query Frame = 1
Query:    1 IFICAVSRP----NASCDFDGKIGIWRICVIKQAQRSSTRRERGQQYEFDV-TIDAEWYQEWYKDSFLPALKEKMPWLEGEEVIAQKDEATPHTGKNTPRKLNELGRDGEWNFNLVTQPAQSPDLNINDLEF 381
            +F+ AV+RP    + SC FDGKIGIW       AQRSS  R RG      +  I  +  ++   +  +PA++EK P    + +  Q+D A  H   + P         G ++F L+ QP  SPD+NI DL +
Sbjct:  232 MFMAAVARPRWNQDGSCAFDGKIGIWPFTKQVPAQRSSDNRPRGTLETKPIDAITKDVIRDMLVNKIMPAIREKWPNDLSKVIYIQQDNAPCHINNDDPVFQQHRLLHG-FDFRLIQQPPNSPDMNILDLGY 362          
BLAST of mRNA_H-paniculata_contig23786.6430.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.560e-10
Identity = 49/135 (36.30%), Postives = 66/135 (48.89%), Query Frame = 1
Query:    1 IFICAVSRPN----ASCDFDGKIGIWRICVIKQAQRSSTRRERGQQYEFDVTIDAEWYQEWYKDSFLPALKEKMP--WLEGEEVIAQKDEATPHTGKNTPRKLNELGRDGEWNFNLVTQPAQSPDLNINDLEFSA 387
            +F+ AV RP      S  FDGK+GI+   +   A+RSS  + +G       T+  + Y +   +  LPA+  K P  W   + +  Q+D A PH     P  +      G  N  LVTQPA SPDLNI DL F A
Sbjct:  192 MFLTAVGRPQYDHGTSQYFDGKLGIFPFVIHGTAKRSSRHQAKGAPVLIPQTVTRDIYVDALVNHVLPAILTKFPSRW---KTLYIQQDGARPHCTDGCPELVASAASFG-LNIKLVTQPANSPDLNILDLGFFA 322          
BLAST of mRNA_H-paniculata_contig23786.6430.1 vs. uniprot
Match: UPI00053F43DC (uncharacterized protein LOC104894846 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F43DC)

HSP 1 Score: 66.6 bits (161), Expect = 2.850e-10
Identity = 45/132 (34.09%), Postives = 65/132 (49.24%), Query Frame = 1
Query:    1 IFICAVSRP----NASCDFDGKIGIWRICVIKQAQRSSTRRERGQQYEFDV-TIDAEWYQEWYKDSFLPALKEKMPWLEGEEVIAQKDEATPHTGKNTPRKLNELGRDGEWNFNLVTQPAQSPDLNINDLEF 381
            +FI AV+RP    + SC F+GKIGIW       AQR S  R RG      +  I  +  ++      +PA++EK P    + +  Q+D A  H   + P        DG ++F L+ QP  SPD+N  DL +
Sbjct:  226 MFIAAVARPRWNQDGSCAFNGKIGIWAFTKQVPAQRRSNNRPRGTLETKPIEAITKDVIRDMLVHKIMPAIREKWPDDLSKVIYIQQDNAPAHITNDDPIFQQHRLLDG-FDFRLIQQPPNSPDMNCLDLGY 356          
BLAST of mRNA_H-paniculata_contig23786.6430.1 vs. uniprot
Match: UPI00053F84DB (uncharacterized protein LOC104906780 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053F84DB)

HSP 1 Score: 66.2 bits (160), Expect = 3.970e-10
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 1
Query:    1 IFICAVSRPN----ASCDFDGKIGIWRICVIKQAQRSSTRRERGQQYEFDV-TIDAEWYQEWYKDSFLPALKEKMPWLEGEEVI-AQKDEATPHTGKNTPRKLNELGRDGEWNFNLVTQPAQSPDLNINDLEF 381
            +F   V+RP       C FDGKIGI+     + A+R+S  RE+G      V +++ +  ++   +  +PA+KEK P   G   I  Q+D A  H     P       +DG +NF L+ QP  SPDLNI DL F
Sbjct:  270 MFTACVARPRYNSAGECTFDGKIGIFPFTYQEPAKRTSKNREKGTMITKVVESVNQKVTRDMLINEIIPAIKEKWPRDGGPTTIFIQQDNAKAHITHEDPEWQLIHEQDG-FNFILIQQPPNSPDLNILDLGF 401          
BLAST of mRNA_H-paniculata_contig23786.6430.1 vs. uniprot
Match: A0A392MLK4_9FABA (Transposase n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MLK4_9FABA)

HSP 1 Score: 65.5 bits (158), Expect = 4.560e-10
Identity = 47/135 (34.81%), Postives = 70/135 (51.85%), Query Frame = 1
Query:    1 IFICAVSRPNASCDFD----GKIGIWRICVIKQAQRSSTRRERGQQYEFDVT-IDAEWYQEWYKDSFLPALKEKMPWLEGEEVI-AQKDEATPHTGKNTPRKLNELGRDGEWNFNLVTQPAQSPDLNINDLEFSA 387
            +F+ A++RP    +F+    GKIG++ +     A+RSS  R  G      +T I  E  + +  +  LPA+KEK P     E I  Q+D A  H   +   +      +G ++F L+ QPA SPDLNI DL FS+
Sbjct:   59 MFLVAIARPRFDDEFNVTFTGKIGLFPLVEKVPAKRSSANRVAGTLETKPITSITKEVSRMFLINKVLPAIKEKWPREHAHETIFIQQDNAPCHVSPDD-EEFRRAASEGGFDFRLICQPANSPDLNILDLGFSS 192          
BLAST of mRNA_H-paniculata_contig23786.6430.1 vs. uniprot
Match: UPI001C27372B (uncharacterized protein LOC121774291 n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C27372B)

HSP 1 Score: 65.9 bits (159), Expect = 5.260e-10
Identity = 44/130 (33.85%), Postives = 66/130 (50.77%), Query Frame = 1
Query:    1 IFICAVSRP----NASCDFDGKIGIWRICVIKQAQRSSTRRERGQQYEFDV-TIDAEWYQEWYKDSFLPALKEKMPWLEGEEVIAQKDEATPHTGKNTPRKLNELGRDGEWNFNLVTQPAQSPDLNINDL 375
            +F+CAV+RP    N    FDGKIGI+       A+R+S  R  G      + +I  E  ++   +  +PA+ EK P    + +  Q+D A PH   + P       ++G +N  +V QP  SPD N+NDL
Sbjct:  202 MFMCAVTRPLFSDNGEVLFDGKIGIFPFTEQVPAKRNSKNRYAGTLETKPIASITKEVTKQCIINKIIPAIMEKWPEGRSKFITIQQDNAKPHIANHDPDFRAAATQNG-FNIQIVQQPPNSPDTNVNDL 330          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23786.6430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE3.550e-4254.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI001C25717E8.390e-1334.85uncharacterized protein LOC121804947 n=1 Tax=Salvi... [more]
UPI0007EF40B31.440e-1236.36uncharacterized protein LOC108194535 n=1 Tax=Daucu... [more]
UPI000E70440D2.100e-1135.97uncharacterized protein LOC113337402 n=1 Tax=Papav... [more]
UPI00053FA15F6.060e-1134.85uncharacterized protein LOC104905014 n=2 Tax=Beta ... [more]
A0A6G0X8U9_9STRA1.560e-1036.30Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
UPI00053F43DC2.850e-1034.09uncharacterized protein LOC104894846 n=2 Tax=Beta ... [more]
UPI00053F84DB3.970e-1036.09uncharacterized protein LOC104906780 n=2 Tax=Beta ... [more]
A0A392MLK4_9FABA4.560e-1034.81Transposase n=1 Tax=Trifolium medium TaxID=97028 R... [more]
UPI001C27372B5.260e-1033.85uncharacterized protein LOC121774291 n=1 Tax=Salvi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23786contigH-paniculata_contig23786:2287..2673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog157072.XP_008870376.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2D1IG@1,2SI8K@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size387
Cds size387
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.1313846-CDS-H-paniculata_contig23786:2286..26731622929678.1313846-CDS-H-paniculata_contig23786:2286..2673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23786 2287..2673 -
1691480963.435816-CDS-H-paniculata_contig23786:2286..26731691480963.435816-CDS-H-paniculata_contig23786:2286..2673Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23786 2287..2673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23786.6430.1prot_H-paniculata_contig23786.6430.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23786 2287..2673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23786.6430.1

>prot_H-paniculata_contig23786.6430.1 ID=prot_H-paniculata_contig23786.6430.1|Name=mRNA_H-paniculata_contig23786.6430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=129bp
IFICAVSRPNASCDFDGKIGIWRICVIKQAQRSSTRRERGQQYEFDVTID
AEWYQEWYKDSFLPALKEKMPWLEGEEVIAQKDEATPHTGKNTPRKLNEL
GRDGEWNFNLVTQPAQSPDLNINDLEFSA
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mRNA from alignment at H-paniculata_contig23786:2287..2673-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23786.6430.1 ID=mRNA_H-paniculata_contig23786.6430.1|Name=mRNA_H-paniculata_contig23786.6430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at H-paniculata_contig23786:2287..2673- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATTCATCTGCGCCGTCTCGCGTCCAAATGCTTCCTGCGATTTCGACGG CAAGATTGGAATCTGGCGTATTTGCGTCATCAAGCAGGCGCAGAGGAGTT CGACCCGGCGTGAACGGGGGCAGCAATACGAGTTCGACGTGACCATTGAC GCCGAATGGTACCAGGAGTGGTACAAGGACTCTTTTCTCCCAGCATTGAA GGAAAAGATGCCGTGGTTGGAGGGTGAGGAAGTGATCGCGCAGAAGGATG AAGCGACCCCACACACGGGGAAAAACACACCGCGGAAGCTCAACGAACTC GGGAGGGACGGGGAGTGGAACTTCAATCTCGTAACTCAGCCTGCGCAGTC ACCAGATCTCAACATCAACGATTTGGAGTTCTCTGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig23786:2287..2673-

>mRNA_H-paniculata_contig23786.6430.1 ID=mRNA_H-paniculata_contig23786.6430.1|Name=mRNA_H-paniculata_contig23786.6430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=774bp|location=Sequence derived from alignment at H-paniculata_contig23786:2287..2673- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATTCATCTGCGCCGTCTCGCGTCCAAATGCTTCCTGCGATTTCGACGG
CAAGATTGGAATCTGGCGTATTTGCGTCATCAAGCAGGCGCAGAGGAGTT
CGACCCGGCGTGAACGGGGGCAGCAATACGAGTTCGACGTGACCATTGAC
GCCGAATGGTACCAGGAGTGGTACAAGGACTCTTTTCTCCCAGCATTGAA
GGAAAAGATGCCGTGGTTGGAGGGTGAGGAAGTGATCGCGCAGAAGGATG
AAGCGACCCCACACACGGGGAAAAACACACCGCGGAAGCTCAACGAACTC
GGGAGGGACGGGGAGTGGAACTTCAATCTCGTAACTCAGCCTGCGCAGTC
ACCAGATCTCAACATCAACGATTTGGAGTTCTCTGCAATATTCATCTGCG
CCGTCTCGCGTCCAAATGCTTCCTGCGATTTCGACGGCAAGATTGGAATC
TGGCGTATTTGCGTCATCAAGCAGGCGCAGAGGAGTTCGACCCGGCGTGA
ACGGGGGCAGCAATACGAGTTCGACGTGACCATTGACGCCGAATGGTACC
AGGAGTGGTACAAGGACTCTTTTCTCCCAGCATTGAAGGAAAAGATGCCG
TGGTTGGAGGGTGAGGAAGTGATCGCGCAGAAGGATGAAGCGACCCCACA
CACGGGGAAAAACACACCGCGGAAGCTCAACGAACTCGGGAGGGACGGGG
AGTGGAACTTCAATCTCGTAACTCAGCCTGCGCAGTCACCAGATCTCAAC
ATCAACGATTTGGAGTTCTCTGCA
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