mRNA_H-paniculata_contig23774.6427.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23774.6427.1
Unique NamemRNA_H-paniculata_contig23774.6427.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23774.6427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23774contigH-paniculata_contig23774:676..2690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size544
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23774.6427.1prot_H-paniculata_contig23774.6427.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23774 947..2690 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929677.694738-UTR-H-paniculata_contig23774:675..9461622929677.694738-UTR-H-paniculata_contig23774:675..946Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23774 676..946 +
1691480963.2685792-UTR-H-paniculata_contig23774:675..9461691480963.2685792-UTR-H-paniculata_contig23774:675..946Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23774 676..946 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929677.717849-CDS-H-paniculata_contig23774:946..9721622929677.717849-CDS-H-paniculata_contig23774:946..972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23774 947..972 +
1691480963.2783253-CDS-H-paniculata_contig23774:946..9721691480963.2783253-CDS-H-paniculata_contig23774:946..972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23774 947..972 +
1622929677.7359445-CDS-H-paniculata_contig23774:2443..26901622929677.7359445-CDS-H-paniculata_contig23774:2443..2690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23774 2444..2690 +
1691480963.2864995-CDS-H-paniculata_contig23774:2443..26901691480963.2864995-CDS-H-paniculata_contig23774:2443..2690Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23774 2444..2690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23774.6427.1

>prot_H-paniculata_contig23774.6427.1 ID=prot_H-paniculata_contig23774.6427.1|Name=mRNA_H-paniculata_contig23774.6427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MEVLTGQRRATKKMTWVHRVGWLCSLLAVAVGLWTTPAAAMTASKGISST
NEVHYAPPMRKNSNADSYSNSTWDGDGTVVFFNNWLSVVDK
back to top

mRNA from alignment at H-paniculata_contig23774:676..2690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23774.6427.1 ID=mRNA_H-paniculata_contig23774.6427.1|Name=mRNA_H-paniculata_contig23774.6427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2015bp|location=Sequence derived from alignment at H-paniculata_contig23774:676..2690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACACCAAAGGATTCATCACAGCAGCAAAGGGCACCAAAACGCCATGCAG
CATCGAGCTGCGGTGGGAGCTTGAAATAGCGCGTTCGAACCGGGCTTGCT
GGTGTACTTTCCTCCAAAATTAGTCAAAGAAGAGGGGACTGTCTTGATGC
AGCTCCGGTTTGGAGCCCGCACCATCACACTCCTTTTGTAACAGGCTTCG
ACTTTTGGGGAGATTGTTGGGGCTTAGCCTCGAAGCGATCGTTGGCACGA
AGCAATAGGACAGCAGGGGAGATGGAAGTGCTAACCGGCCAGAGAAGGTG
AGAGAGAGATAGTAACTGGGTGGTATCGTCGTGCGCGTGATGGGCATAGG
GCGCTCGGTATTGAAATGAAAAAGTCGACCGATCTTCTCCTGTGGTGCGG
CGTTCCACGGACACCAACATCGGGTATGGCTTCAAAAACTACAACCAACC
GATTCATGTTGCACACAGGTAAAGTTTTAATTATTTACTCTGAGATAGAC
GTTGTTTTCGAAAAGACGCCAGCCATGGGTGGGAGGGGTAACATGAGTAT
CTCGCTCATGCGGCAGACAACGACGGGGGGCGGAGGAGGTGAGCAGGGTT
CGCGATCGAAGAGAGGTAGTGGTCACTCTCGCAAGTGGTTCTGTCGCGGC
GCGTATTAGACGATGAGGGAAAAGGAAGTGGTCACATGGAGGGTGCTAGT
TTTGACCCAACACCGACGCTTTCAAAGATGAGCCATGCGTGCGGGATGAA
ACGTGGCTACCTACGAACCCAGCACTCGGTAGAGGACGTAGGTCGAGGAA
GCAAATGATCTAACACGGATGCGCTCGCTAGACTAATAATATTCGTTATT
TACTGTCTTGGATACCGGTACGGCTTGTATGGGCCTCGAGTCTACCGCAG
GGCTGTTCGTTGGTCTACCGCAGGGCAGCGTCGCAAGCAAAGTATCTGCT
CCGAATAACGGCACAATTGATCAAGTCCGATCCAAACAAACCGAGACAAC
TCCCAAGGGGAGAATACCTTTGTGAAGCACTGCTGTAGCGCTCTAGTGAT
TGAGATCTCTGCTGTGTGTAGACGTGTATAGTCCCAGTACTTATGGAACG
TCCCGTATTTCGTGCGGCCGGCATACATGGAGCTGACCGAAGCAACAGTG
TACGGAGGAACGACAGACAGTATACCCTAGCCTACCAACAACGAACTGAT
CGATTGCTTCGTATTATGGCCAAATAGAGAGGCGTGCGAGCGTCAAGTGG
CTCGTTTGATTCATGAGGCATTGACCAAATTTAGTCGGTGTCTTCATTTG
CGGTATATATCACTCACTACTGCCATTAGTCTCGTGCAATTGCTACGTGG
AGTAGCCAAGCCAGTTGCATGATCCCGAGCTCTGACAATCGGCTGCACTT
GTAGAAGAAGGATTAGGCTAGCTCTACTACGCGAAGTAACTTGTTGTGAA
GGCTCTAGTGCTTTTCAACGACCCCCCCCGTGGAACACAAAAACAAAAAC
GGTCAGTCCGTACATCTGTAGTGTTGAAAAATGAAGCGCTCGGTCTGGGT
TGGGTTACACGATCAACTGAATGTCACCTCGAACACTAGAACGGTAAGTA
AGAGAAGGCATGACCACCGTGCCCTACCGCCCAAACTCTGATAAGTTTCC
ATGTTACTACACCTAATATGTATATATATATATATATTTGTATGAATTTG
TTGTGAAGTGAACCAAGTGAACCGCTGACCCTCGTCGAAACCCTTGCCTA
AAAACGTATTTACACCAGAGCGACGAAAAAGATGACATGGGTGCATCGCG
TAGGATGGCTTTGCAGTCTGTTGGCCGTCGCGGTAGGTCTTTGGACGACG
CCTGCTGCTGCCATGACCGCGTCGAAAGGCATCAGCAGCACCAACGAAGT
CCACTACGCTCCACCAATGCGCAAGAACAGTAACGCCGACAGTTATAGCA
ACAGCACTTGGGATGGCGACGGCACGGTCGTGTTCTTCAATAACTGGCTG
TCGGTCGTCGACAAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23774:676..2690+

>mRNA_H-paniculata_contig23774.6427.1 ID=mRNA_H-paniculata_contig23774.6427.1|Name=mRNA_H-paniculata_contig23774.6427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig23774:676..2690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGTGCTAACCGGCCAGAGAAGATGGAAGTGCTAACCGGCCAGAGA
AGAGCGACGAAAAAGATGACATGGGTGCATCGCGTAGGATGGCTTTGCAG
TCTGTTGGCCGTCGCGGTAGGTCTTTGGACGACGCCTGCTGCTGCCATGA
CCGCGTCGAAAGGCATCAGCAGCACCAACGAAGTCCACTACGCTCCACCA
ATGCGCAAGAACAGTAACGCCGACAGTTATAGCAACAGCACTTGGGATGG
CGACGGCACGGTCGTGTTCTTCAATAACTGGCTGTCGGTCGTCGACAAGA
GCGACGAAAAAGATGACATGGGTGCATCGCGTAGGATGGCTTTGCAGTCT
GTTGGCCGTCGCGGTAGGTCTTTGGACGACGCCTGCTGCTGCCATGACCG
CGTCGAAAGGCATCAGCAGCACCAACGAAGTCCACTACGCTCCACCAATG
CGCAAGAACAGTAACGCCGACAGTTATAGCAACAGCACTTGGGATGGCGA
CGGCACGGTCGTGTTCTTCAATAACTGGCTGTCGGTCGTCGACAAG
back to top