mRNA_H-paniculata_contig10993.643.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10993.643.1
Unique NamemRNA_H-paniculata_contig10993.643.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10993.643.1 vs. uniprot
Match: D8LCH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH6_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 5.350e-30
Identity = 68/119 (57.14%), Postives = 88/119 (73.95%), Query Frame = 1 
Query:    1 FIKTQVEEGRERWQARLDSLREECSTERATTRDKVARLAAKSEQAEXXXXXXXXXXGDRKAALRAALEAELFQVEAKVAAVLEQKSGQAEALRERLATLRKATKAREEELSDYRRRTFS 357
            F  T++EEGRERW++RL+ L+EECS ER   R++V+RL  ++E AE           D+ A LRA+L AE  QVEAKVAAVL +K+ QA+AL+ERL +L+  TKAREEELSD+RRRTFS
Sbjct:    3 FYYTKLEEGRERWRSRLERLQEECSEERKAVREQVSRLTERAEGAEAAARRAAGVREDKSAGLRASLSAEFAQVEAKVAAVLGRKTEQADALKERLTSLQGQTKAREEELSDHRRRTFS 121
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BLAST of mRNA_H-paniculata_contig10993.643.1 vs. uniprot
Match: A0A6H5JCC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCC7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.460e-27
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 1 
Query:   13 QVEEGRERWQARLDSLREECSTERATTRDKVARLAAKSEQAEXXXXXXXXXXGDRKAALRAALEAELFQVEAKVAAVLEQKSGQAEALRERLATLRKATKAREEELSDYRRRTFS 357
            Q+EEGRERW++RL  L+EECS ER   +++V+RL+ ++E AE           D  A LRA+L AE  QVE KVAAVL +K+ QA AL+ERL++L+  TKAREEELSD+RRRTFS
Sbjct:   20 QLEEGRERWRSRLKRLQEECSEERKAAKEEVSRLSERAEGAEAAARRAAGFREDESAGLRASLSAEFAQVEGKVAAVLSRKTEQANALKERLSSLQGQTKAREEELSDHRRRTFS 134
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10993.643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCH6_ECTSI5.350e-3057.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCC7_9PHAE1.460e-2756.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10993contigH-paniculata_contig10993:2010..5850 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005090.1
Exons3
Model size360
Cds size360
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10993.643.1prot_H-paniculata_contig10993.643.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10993 2010..5850 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928806.009425-CDS-H-paniculata_contig10993:2009..22281622928806.009425-CDS-H-paniculata_contig10993:2009..2228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10993 2010..2228 +
1691480627.040713-CDS-H-paniculata_contig10993:2009..22281691480627.040713-CDS-H-paniculata_contig10993:2009..2228Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10993 2010..2228 +
1622928806.0273957-CDS-H-paniculata_contig10993:3042..30871622928806.0273957-CDS-H-paniculata_contig10993:3042..3087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10993 3043..3087 +
1691480627.0557303-CDS-H-paniculata_contig10993:3042..30871691480627.0557303-CDS-H-paniculata_contig10993:3042..3087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10993 3043..3087 +
1622928806.0431452-CDS-H-paniculata_contig10993:5754..58501622928806.0431452-CDS-H-paniculata_contig10993:5754..5850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10993 5755..5850 +
1691480627.0757608-CDS-H-paniculata_contig10993:5754..58501691480627.0757608-CDS-H-paniculata_contig10993:5754..5850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10993 5755..5850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10993.643.1

>prot_H-paniculata_contig10993.643.1 ID=prot_H-paniculata_contig10993.643.1|Name=mRNA_H-paniculata_contig10993.643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
FIKTQVEEGRERWQARLDSLREECSTERATTRDKVARLAAKSEQAEEAAR
AAAGTAGDRKAALRAALEAELFQVEAKVAAVLEQKSGQAEALRERLATLR
KATKAREEELSDYRRRTFS*
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mRNA from alignment at H-paniculata_contig10993:2010..5850+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10993.643.1 ID=mRNA_H-paniculata_contig10993.643.1|Name=mRNA_H-paniculata_contig10993.643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3841bp|location=Sequence derived from alignment at H-paniculata_contig10993:2010..5850+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTATTAAAACGCAGGTAGAAGAGGGACGCGAACGGTGGCAAGCCAGGCT
CGATAGCTTACGGGAAGAGTGCTCAACCGAGCGAGCTACGACCAGGGATA
AAGTGGCTCGCCTCGCGGCTAAGTCGGAACAGGCGGAAGAAGCAGCGCGG
GCGGCGGCTGGGACGGCGGGGGATAGAAAGGCGGCGCTGCGCGCCGCCTT
GGAGGCTGAACTATTTCAGGTGAAAAATATGGACACAGCAACGCTGCGTG
CGAGGGGGGGGCGGGGGATGCACTATTATGTGTTGCATGCCGCAGCATAT
ATACCATTGACAATGCGTCCTCGAGAGGACGGAGCTTACTGCGTGGAGAG
GGGGGGTTAGGTACGAGGGCTGTCGAGCACCAACACCTACAGCAGGAGGA
GAGGGTGGTTCTCTGCTCTGTTCTGCCATTATATTTGCCGCAACGTGGTT
CTCTGCCACTGTGATGCTATCGTATCGTTATCTATATGCTACTTACAGTG
TATACTGTGACGATGCGTTCAGGCAAATATATTGAGGAAAAACGAAGCTG
AAAGGGCTTCTCAAAATTTCCGTCTACGGCACCCCCCTCCTCTCCCTCGA
CCGTGCCTTGCGGCCATAAGGAATCTGGCCCAACTCCTCCAACCCTCGTT
CCGTCCTCTGGACGACCGATTAAATGTATAACGCGAGGCGGATGAGCGCC
ACGGGGCTGAACGACCGTCAACTCTCGTAGTACCTACGAAGAGATACATA
TGGAAACCTCATATCATATATACAAATGCATGGGCAAGGTAAACATTTTC
AGGGAGGATTCTTGCACGCATATTCTCGCTTTTCCGCTTTCTACATTGAC
CCCCCCCCTCTCCTGACAATGGCCTAACAACTGCAGTATGCAAGACATAA
GTAACCTCCCCACCCTGCCTTTCCCGCTACTTCCCGTGCCATATTCGACA
ATTCTGTTGTTCATGATGATATATATAACATGGGCATATTAATACCACGT
GGCCAATGGACTGTGTATCGCCGTTGTGCTCAGGTGGAGGCGAAGGTGGC
CGCCGTACTTGAGCAAAAGTCAGGGCAGGTGAGGGTTCAAAGACACAAAC
ACCCAAATCAACTGAGAAGACTAAGCAGACAGGGCAATGAGCGAGTTGTC
TGGTATTTAACCGGATCGTTTACCGCTATACACATGGACATACTATGGTT
TCAACGCGATCGTACACTGTGATATTCATAACACGTTTTTGGTGATCTGT
GATGTTATAATGGGGCGCGATTGATATGTAACAAAGCGTGTGTCTATGCA
CGGTAAAAAGCAACAGATGGTGGTGCGTGGAGCGATGATACGAAAACAGC
CAACGATAAACTGTATACGCCGTTAAGAACCAATATTCTTTTCAGGATAA
CACGTTTTTAGCTGTGACGTGGGGCTGTTGAGGAATAAGGCTCTGCAGCT
TATGTAGCCAACGCTTCGTAGCGCGGTGTGCTGTGTGAGATCAAGCGACA
TCTGCAACAGCATCGTTGAATACATTTGTCATGAGTGGAATGGGAGGTGC
GGTAGAATTATATCGTAGATTGTTACGGGACTGTCAGATGAGCCGTTGGG
ACCCATGAGTTCCTGCCATGGCTTTCTCTGCTGTCCCTCTTACTCTTCTG
CCCGAACATCACCGTTCGTTGTTCAAAGTTTGTCTTGCCCAGAAATCGGC
ACCTTTCCAACATCATCTTCCCTCTATATCCTCGTCACAGCGTTGCTCCT
TGTTGGCTTAACCGCCACCAGCGTCAGCCTCTGTCACCACCACAGAGGTG
TCTTGCGGCATTTCTCAACAGGGGCAAAATATCTGATCGCTGACACCCTA
CCAATGAACTCGTAATTTCCGTCTCTTGAGTCGCTATCGAACGCCCCTGT
TCTTGGTACAATGGGATTGCGACAGAGTAGATTTTGAGATATCGAGGATA
TATTATTTTTCATTAAAGACGAAACCATTCGATCCTAGACACTTGAACAA
AATGAGTGTTCATGTATAGTCGGTCGGTCCTCAGGTCAACAATAATATTG
CCAAGTTTATCTTGCAATGCTCTTCTTACACCACTCAGATTTGCTATTTT
GTGGAGTTAGGATTTTTCACGTTCTTTCTTGGAGATGTGGTCAGGGTTAG
GGTTAAGGTTAGTTCTAATGACGACGATCACGACGATGATCACGGCGAAC
GTCACGACGATGACCATGACCACGACGATGACCACGACGATGACGTCGAC
GGATGTTCAGTGCAGAGGGGGGTTCGATGAAACTCCGTCTTTACATGCAC
TGGGATAGTGCCCTGTCACTGCTTGCAGTACTTCCCTACTCTTCCGCTTC
TTATCACCCTCCCCCTCACTTTGCTGGCTTCATCCTTAACATATTCAAGA
TGGTGCCACCCCCCTACCCCCCAACACACTCCCCCCCACACCCACACACT
CACCCCCACCATTATCAGCTTTTTCCTTGACATGTTGCCCCCCGTCCCCC
GTCCGTGGTCAATGGTCTAACAACTACGGCATGCAAAACATAATTACGCC
CCCCCGTTGGCTTCCCCGCTACGAAAGTATGTTATCATCCTTCCTTTTGA
AACGCAGCCTGCACGGCGAAAAACCGGTATAGCTCCACAGCATCGTCCCG
GCATTATAGGGATGCGAGGTCAATGACCTATGACTCTGGGGGCATGCGTT
ATCATGAGTACCCACACCCCGCCCTAACCGGACATCCCCCAGTCCCCCAC
CGACCTCAGAGATAACGAAGCAGACATCAAGCACATTGCATCTTATTTCC
TGGTTCCTTAGCTATAGTAGCTATTTTGATGCGCTATCGCGGGGGGGGAC
TTATGTTTTTCATGCCGTAGTTGTTCGACCGTTAACCACGCGTACTCAGG
AGGACGGAGCGGAGGGGGGTGACCATAAATGACAATGCAAGATTGATTTC
TCTCAACTTGGTCATTAAGGGGGAGATGAATGATAAATGCTGATGACGAG
GACGGTGGTGGTGGTGGTGGTGGTGGTGTTGATGGTGGCGGTGTGATGTA
GCATCATCCCCAATTGATGACTTAACATATGTTACTCTGAAGTGGTTCTC
AGCCTTTTGTTATTGTTGTTGTTATAAACAAAGCGCACCTTTAGGAGGTA
TTCGGCAGCGGCGGGCGCCGTGGGCGGTTACCGCAACCGGTGGAGGCAAG
AAGGGTAACGTAGTTGGGTAACCGAAATGTAAGCAGAAAGCACAATATTG
ACAAGTGCAAAGACAATTGACATATTATTGGAAACGTGAACTGTGAGGCG
TGTTCAGCTTCGTTGTTTAAGTGTGACTGAACGTATCAACGTACCCTTCG
AGCAAAATGGATCTATCGCTAGCAGCTTCAAATTCAAATGCAACTCAAGC
GGTGTTTTTTCAAGTTTTAGGTAAATAGGTGGCGTGAAATAACTTTCGTT
GCCCGATTTGGTTATTGGATAGAACACTTGCTCTCGTTTTGCGTCGCTCT
TACAAGCAATAGATGACCGTGATATAGAGCAATAATCTCTTCATTTTTGT
TATTTTCAAATTGAACCGTCAAACACAGAAAATAGTCTAAGAAAAAGAAA
ACAAATGGCGTAAGATGATCTCTAGCGAACTAGCCAACTAACTAATTGAC
TGGCTGACTGGCTATATTTACTGTTTGCTCTTTCTTTCGCTCTGTCTGAT
CACAATCGCGCAACAAATGAAACGAACCACAAAATAACGAAATAGGCGGA
AGCGCTGAGGGAACGTCTGGCTACTCTCCGAAAAGCAACCAAGGCCCGGG
AGGAGGAACTTTCAGACTACCGACGCCGGACCTTCAGCTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig10993:2010..5850+

>mRNA_H-paniculata_contig10993.643.1 ID=mRNA_H-paniculata_contig10993.643.1|Name=mRNA_H-paniculata_contig10993.643.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig10993:2010..5850+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTATTAAAACGCAGGTAGAAGAGGGACGCGAACGGTGGCAAGCCAGGCT
CGATAGCTTACGGGAAGAGTGCTCAACCGAGCGAGCTACGACCAGGGATA
AAGTGGCTCGCCTCGCGGCTAAGTCGGAACAGGCGGAAGAAGCAGCGCGG
GCGGCGGCTGGGACGGCGGGGGATAGAAAGGCGGCGCTGCGCGCCGCCTT
GGAGGCTGAACTATTTCAGTTTATTAAAACGCAGGTAGAAGAGGGACGCG
AACGGTGGCAAGCCAGGCTCGATAGCTTACGGGAAGAGTGCTCAACCGAG
CGAGCTACGACCAGGGATAAAGTGGCTCGCCTCGCGGCTAAGTCGGAACA
GGCGGAAGAAGCAGCGCGGGCGGCGGCTGGGACGGCGGGGGATAGAAAGG
CGGCGCTGCGCGCCGCCTTGGAGGCTGAACTATTTCAGGTGGAGGCGAAG
GTGGCCGCCGTACTTGAGCAAAAGTCAGGGCAGGTGGAGGCGAAGGTGGC
CGCCGTACTTGAGCAAAAGTCAGGGCAGGCGGAAGCGCTGAGGGAACGTC
TGGCTACTCTCCGAAAAGCAACCAAGGCCCGGGAGGAGGAACTTTCAGAC
TACCGACGCCGGACCTTCAGCTAGGCGGAAGCGCTGAGGGAACGTCTGGC
TACTCTCCGAAAAGCAACCAAGGCCCGGGAGGAGGAACTTTCAGACTACC
GACGCCGGACCTTCAGCTAG
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