mRNA_H-paniculata_contig23762.6425.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23762.6425.1
Unique NamemRNA_H-paniculata_contig23762.6425.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23762.6425.1 vs. uniprot
Match: D8LN21_ECTSI (Threonine synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN21_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 2.800e-57
Identity = 93/98 (94.90%), Postives = 96/98 (97.96%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKDYVDCFIMFPEGRVSEIQERQMTTVPDANIRCVSVEGSFDDCQDIVKAAFADQPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV 294
            TGSAAIYGLRGK +V+CFIMFPEGRVSEIQERQMTTVPDANI CVSVEGSFDDCQDIVKAAFAD+PFREEVKLGAVNSINWARVLAQMTYYFWAHFRV
Sbjct:  163 TGSAAIYGLRGKAHVNCFIMFPEGRVSEIQERQMTTVPDANIHCVSVEGSFDDCQDIVKAAFADKPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV 260
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BLAST of mRNA_H-paniculata_contig23762.6425.1 vs. uniprot
Match: A0A835Z4E7_9STRA (Threonine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4E7_9STRA)

HSP 1 Score: 171 bits (433), Expect = 9.300e-49
Identity = 82/98 (83.67%), Postives = 89/98 (90.82%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKDYVDCFIMFPEGRVSEIQERQMTTVPDANIRCVSVEGSFDDCQDIVKAAFADQPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV 294
            TGSAAIYG+RGK ++DCFI+FPEGRVS+IQERQMTTV D NI CVSVEGSFDDCQ IVKAAF D+ FRE V LGAVNSINWARVLAQMTYYFWA+FRV
Sbjct:  151 TGSAAIYGMRGKKHMDCFILFPEGRVSQIQERQMTTVEDTNIHCVSVEGSFDDCQAIVKAAFNDKEFRERVSLGAVNSINWARVLAQMTYYFWAYFRV 248
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BLAST of mRNA_H-paniculata_contig23762.6425.1 vs. uniprot
Match: W7TYE5_9STRA (Threonine synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYE5_9STRA)

HSP 1 Score: 164 bits (415), Expect = 1.300e-46
Identity = 76/98 (77.55%), Postives = 89/98 (90.82%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKDYVDCFIMFPEGRVSEIQERQMTTVPDANIRCVSVEGSFDDCQDIVKAAFADQPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV 294
            TGSAAIYGLRGK  V CFI++P+GR S IQERQMTTVPD N++C++VEG+FDDCQ+IVKAAF D  FREEV+LGAVNSINWARVLAQ+TYYFWA+FR+
Sbjct:  153 TGSAAIYGLRGKANVRCFILYPKGRTSAIQERQMTTVPDKNVQCIAVEGTFDDCQNIVKAAFQDASFREEVRLGAVNSINWARVLAQITYYFWAYFRI 250
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BLAST of mRNA_H-paniculata_contig23762.6425.1 vs. uniprot
Match: A0A7S2UCD3_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCD3_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.090e-46
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKDYVDCFIMFPEGRVSEIQERQMTTVPDANIRCVSVEGSFDDCQDIVKAAFADQPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV 294
            TGSAAIYGLRGK  VDCFI++P+GRVSEIQERQMTTVPD NI CV+VEG+FDDCQDIVKA+FAD  FR  VKLGAVNSINW RVLAQ TYY+W++ R+
Sbjct:  149 TGSAAIYGLRGKKGVDCFILYPQGRVSEIQERQMTTVPDDNIHCVAVEGTFDDCQDIVKASFADVEFRNRVKLGAVNSINWCRVLAQTTYYYWSYLRI 246
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BLAST of mRNA_H-paniculata_contig23762.6425.1 vs. uniprot
Match: A0A7S2IFR4_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IFR4_9STRA)

HSP 1 Score: 164 bits (415), Expect = 2.120e-46
Identity = 77/98 (78.57%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKDYVDCFIMFPEGRVSEIQERQMTTVPDANIRCVSVEGSFDDCQDIVKAAFADQPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV 294
            TGSAAIYGLRGK  VDC I+FP GRVS IQERQMTTVPDANI CV+++G+FDDCQD+VKA+FAD+ FRE VKLGAVNSINW RVLAQ TYYFW++ RV
Sbjct:  139 TGSAAIYGLRGKKGVDCVILFPHGRVSAIQERQMTTVPDANIHCVAIDGTFDDCQDLVKASFADKDFRERVKLGAVNSINWCRVLAQTTYYFWSYLRV 236
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BLAST of mRNA_H-paniculata_contig23762.6425.1 vs. uniprot
Match: A0A7S2SVW5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVW5_9STRA)

HSP 1 Score: 158 bits (399), Expect = 4.780e-46
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKDYVDCFIMFPEGRVSEIQERQMTTVPDANIRCVSVEGSFDDCQDIVKAAFADQPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV 294
            TGSAAIYGLRGK  V+CFI++P+GRVS IQERQM TVPD+NI C+ VEG+FDDCQDIVK AF D+ FR+EVKLGAVNSINWARVLAQ+TYYF A+++V
Sbjct:  152 TGSAAIYGLRGKANVNCFILYPKGRVSAIQERQMATVPDSNIHCLCVEGNFDDCQDIVKGAFMDKSFRDEVKLGAVNSINWARVLAQITYYFHAYYQV 249
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BLAST of mRNA_H-paniculata_contig23762.6425.1 vs. uniprot
Match: A0A7S1Z2C3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z2C3_TRICV)

HSP 1 Score: 163 bits (413), Expect = 5.190e-46
Identity = 78/98 (79.59%), Postives = 86/98 (87.76%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKDYVDCFIMFPEGRVSEIQERQMTTVPDANIRCVSVEGSFDDCQDIVKAAFADQPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV 294
            TGSAAIYGLRGK  VDC I++PEGRVS IQERQMTTVPD NI CV+VEG+FDDCQD+VKA+FAD  FRE VKLGAVNSINW RVLAQ TYYFW++ RV
Sbjct:  183 TGSAAIYGLRGKKGVDCVILYPEGRVSAIQERQMTTVPDDNIHCVAVEGTFDDCQDLVKASFADAAFRERVKLGAVNSINWCRVLAQTTYYFWSYLRV 280
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BLAST of mRNA_H-paniculata_contig23762.6425.1 vs. uniprot
Match: A0A7S4SNE2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SNE2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 2.110e-45
Identity = 77/98 (78.57%), Postives = 85/98 (86.73%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKDYVDCFIMFPEGRVSEIQERQMTTVPDANIRCVSVEGSFDDCQDIVKAAFADQPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV 294
            TGSAAIYGLRGK  VDC I+FP GRVS IQERQMTTVPD+NI CV+V+G+FDDCQDIVKA+F D  FRE VKLGAVNSINW RVLAQ TYYFW++ RV
Sbjct:  154 TGSAAIYGLRGKKGVDCVILFPHGRVSAIQERQMTTVPDSNIHCVAVDGTFDDCQDIVKASFGDADFRERVKLGAVNSINWCRVLAQTTYYFWSYLRV 251
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BLAST of mRNA_H-paniculata_contig23762.6425.1 vs. uniprot
Match: A0A7S2NSM0_9STRA (Threonine synthase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSM0_9STRA)

HSP 1 Score: 161 bits (408), Expect = 2.780e-45
Identity = 75/98 (76.53%), Postives = 87/98 (88.78%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKDYVDCFIMFPEGRVSEIQERQMTTVPDANIRCVSVEGSFDDCQDIVKAAFADQPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV 294
            TGSAAIYGLRGK+ +DC I++P+GRVSEIQERQMTTVPD NI CVSV+G+FDDCQD+VKAAF D  FR+EV LGAVNSINW RVLAQ TYY+W++ RV
Sbjct:  162 TGSAAIYGLRGKEGIDCVILYPKGRVSEIQERQMTTVPDDNIHCVSVDGTFDDCQDLVKAAFRDASFRDEVHLGAVNSINWCRVLAQTTYYYWSYLRV 259
[Close]
BLAST of mRNA_H-paniculata_contig23762.6425.1 vs. uniprot
Match: A0A7S2SVX2_9STRA (Threonine synthase (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVX2_9STRA)

HSP 1 Score: 158 bits (399), Expect = 4.230e-45
Identity = 75/98 (76.53%), Postives = 88/98 (89.80%), Query Frame = 1 
Query:    1 TGSAAIYGLRGKDYVDCFIMFPEGRVSEIQERQMTTVPDANIRCVSVEGSFDDCQDIVKAAFADQPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV 294
            TGSAAIYGLRGK  V+CFI++P+GRVS IQERQM TVPD+NI C+ VEG+FDDCQDIVK AF D+ FR+EVKLGAVNSINWARVLAQ+TYYF A+++V
Sbjct:  152 TGSAAIYGLRGKANVNCFILYPKGRVSAIQERQMATVPDSNIHCLCVEGNFDDCQDIVKGAFMDKSFRDEVKLGAVNSINWARVLAQITYYFHAYYQV 249
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23762.6425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN21_ECTSI2.800e-5794.90Threonine synthase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A835Z4E7_9STRA9.300e-4983.67Threonine synthase n=1 Tax=Tribonema minus TaxID=3... [more]
W7TYE5_9STRA1.300e-4677.55Threonine synthase n=2 Tax=Monodopsidaceae TaxID=4... [more]
A0A7S2UCD3_9STRA2.090e-4678.57Hypothetical protein n=2 Tax=Attheya septentrional... [more]
A0A7S2IFR4_9STRA2.120e-4678.57Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2SVW5_9STRA4.780e-4676.53Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1Z2C3_TRICV5.190e-4679.59Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S4SNE2_9STRA2.110e-4578.57Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2NSM0_9STRA2.780e-4576.53Threonine synthase n=1 Tax=Leptocylindrus danicus ... [more]
A0A7S2SVX2_9STRA4.230e-4576.53Threonine synthase (Fragment) n=1 Tax=Rhizochromul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23762contigH-paniculata_contig23762:579..1600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.4
Seed ortholog evalue5.1e-47
Seed eggNOG ortholog2880.D8LN21
Preferred nameTHR4
KEGG rclassRC00017,RC00526
KEGG koko:K01733
KEGG ReactionR01466,R05086
KEGG Pathwayko00260,ko00750,ko01100,ko01110,ko01120,ko01230,map00260,map00750,map01100,map01110,map01120,map01230
KEGG ModuleM00018
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004795,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006520,GO:0006566,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009088,GO:0009987,GO:0016053,GO:0016311,GO:0016829,GO:0016835,GO:0016838,GO:0019752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044464,GO:0046394,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.2-oxobutyrate metabolic process
EggNOG OGsCOG0498@1,KOG2616@2759
EC4.2.3.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929677.3493-CDS-H-paniculata_contig23762:578..7811622929677.3493-CDS-H-paniculata_contig23762:578..781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23762 579..781 +
1691480963.0688841-CDS-H-paniculata_contig23762:578..7811691480963.0688841-CDS-H-paniculata_contig23762:578..781Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23762 579..781 +
1622929677.3613904-CDS-H-paniculata_contig23762:1509..16001622929677.3613904-CDS-H-paniculata_contig23762:1509..1600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23762 1510..1600 +
1691480963.0800915-CDS-H-paniculata_contig23762:1509..16001691480963.0800915-CDS-H-paniculata_contig23762:1509..1600Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23762 1510..1600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23762.6425.1prot_H-paniculata_contig23762.6425.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23762 579..1600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23762.6425.1

>prot_H-paniculata_contig23762.6425.1 ID=prot_H-paniculata_contig23762.6425.1|Name=mRNA_H-paniculata_contig23762.6425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=98bp
TGSAAIYGLRGKDYVDCFIMFPEGRVSEIQERQMTTVPDANIRCVSVEGS
FDDCQDIVKAAFADQPFREEVKLGAVNSINWARVLAQMTYYFWAHFRV
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mRNA from alignment at H-paniculata_contig23762:579..1600+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23762.6425.1 ID=mRNA_H-paniculata_contig23762.6425.1|Name=mRNA_H-paniculata_contig23762.6425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1022bp|location=Sequence derived from alignment at H-paniculata_contig23762:579..1600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGCTCCGCAGCGATCTACGGCTTACGTGGCAAGGATTACGTAGATTG
CTTCATCATGTTCCCGGAGGGGCGAGTAAGTGAAATTCAAGAGCGGCAGA
TGACCACGGTGCCGGATGCCAACATCCGCTGCGTGAGCGTGGAAGGCTCG
TTCGATGATTGCCAGGATATCGTTAAGGCTGCGTTTGCCGACCAGCCTTT
CAGGTGTTTGCTAGATTTATTAGAAAATCACTGTCATGTAAAACAGTTTG
TTTATCACGTGGAAATGGAGTGTAATTATATGTCTTGTAATTATGTGGTG
ATCGTGTGTAGCGAAACAGGCCGTATTGCTGATCATTCACCTGTTCGTGT
AGGTCGGGCGGGGTTTTTCATCATCAGGAGTATCTTTTCATTATGTATGA
AGAACAGGTAACATTCACGAAGTTTGTTTTTGTGTATGCAAAGCATGCTT
TTTTTTTAGGATGCCTTGGCCGAGAGGTCTTCGTTGTTATCCACTGTTTT
TTGGTTATTTTTCTCAAATTGGCGATTATTGTAGCGGGAAAACTCGTATT
ATTTGCTTTGTTTCTTGGATGATTTATTCGTGGTGCTTTTTTTCGGAACA
AATTCCCTAAAAACGAAGAACGCCATATAGCAAACACACGGCGAATTTTT
CTGTTTGCGGGGAAATCATCTCGAGGCCGAGGCGTTGTTCTGTTGACAAG
CCTTCTTTCGATTTTTTGTTCGATTCTTTTTTCGATTTTTTTCGATTTTT
TGTTCGATTTTTTTTCGTTTTTTTCGTACTCTCTCCCAGCAAATAAAGTT
ACACCTAACTAAGCCCATCACAAACACCTGTCTTTTTCAAAGCTCAAAAT
ATTAACGGGCGATTTCTGATGCCTTGCACAAATAATGTACTCCCTGTAAT
GTGGGGTTGTTGTTGTGGTTTCTCTGTACAGGGAGGAGGTCAAGCTTGGA
GCCGTGAACTCGATCAACTGGGCGAGGGTTCTGGCCCAAATGACGTATTA
CTTCTGGGCTCACTTCCGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig23762:579..1600+

>mRNA_H-paniculata_contig23762.6425.1 ID=mRNA_H-paniculata_contig23762.6425.1|Name=mRNA_H-paniculata_contig23762.6425.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at H-paniculata_contig23762:579..1600+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGCTCCGCAGCGATCTACGGCTTACGTGGCAAGGATTACGTAGATTG
CTTCATCATGTTCCCGGAGGGGCGAGTAAGTGAAATTCAAGAGCGGCAGA
TGACCACGGTGCCGGATGCCAACATCCGCTGCGTGAGCGTGGAAGGCTCG
TTCGATGATTGCCAGGATATCGTTAAGGCTGCGTTTGCCGACCAGCCTTT
CAGACAGGCTCCGCAGCGATCTACGGCTTACGTGGCAAGGATTACGTAGA
TTGCTTCATCATGTTCCCGGAGGGGCGAGTAAGTGAAATTCAAGAGCGGC
AGATGACCACGGTGCCGGATGCCAACATCCGCTGCGTGAGCGTGGAAGGC
TCGTTCGATGATTGCCAGGATATCGTTAAGGCTGCGTTTGCCGACCAGCC
TTTCAGGGAGGAGGTCAAGCTTGGAGCCGTGAACTCGATCAACTGGGCGA
GGGTTCTGGCCCAAATGACGTATTACTTCTGGGCTCACTTCCGGGTGGGA
GGAGGTCAAGCTTGGAGCCGTGAACTCGATCAACTGGGCGAGGGTTCTGG
CCCAAATGACGTATTACTTCTGGGCTCACTTCCGGGTG
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