prot_H-paniculata_contig2375.6423.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig2375.6423.1
Unique Nameprot_H-paniculata_contig2375.6423.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length103
Homology
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 6.910e-25
Identity = 47/67 (70.15%), Postives = 53/67 (79.10%), Query Frame = 0
Query:    9 AVAAEGAAERYLSATPAGEQTRESLSACWRALSEHPHFCRLTAPEKLQMVNHRPLQPVGVHLMVEDC 75
            A+AAE A ERYLS  PA  +TRE++SACWRALSEH HFCRLT PEKLQM+NHRP Q V VHL+ E  
Sbjct:   44 ALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSEQA 110          
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: A0A8J1XR95_OWEFU (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XR95_OWEFU)

HSP 1 Score: 60.5 bits (145), Expect = 2.070e-9
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 0
Query:   16 AERYLSATPAGEQTRESLSACWRALSEHPHFCRLTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLGKSAE 100
            A +YL  TP  +QT E ++   +AL+      +LT  EKLQ++NHRP   V + L+VE+   R  +  +E+L++++ EHLG   E
Sbjct:   47 AVKYLENTPCKDQTPEIVANFMKALAPF----KLTKAEKLQLLNHRPTSAVEIQLLVEESEERLTEAQIEQLLDVIVEHLGSDPE 127          
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: K3X3I4_GLOUD (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3I4_GLOUD)

HSP 1 Score: 54.3 bits (129), Expect = 5.170e-7
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0
Query:   48 RLTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLG 96
            +LT  EKLQ +NH P++ V VHL+VEDC  RF +  +EELI+++E+ L 
Sbjct:   78 QLTPAEKLQFINHIPVELVDVHLIVEDCAGRFSEAQIEELIQIVEQTLA 126          
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: A0A225VL34_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VL34_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.050e-7
Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 0
Query:   49 LTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLG 96
            LT+ EKLQ +NH P++ V +HL++EDC  RF +  V+ELI ++E  LG
Sbjct:   80 LTSAEKLQFINHIPMELVDIHLIIEDCAGRFSETQVDELIRIVERTLG 127          
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: A0A5D6Y3B9_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3B9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.520e-7
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 0
Query:   49 LTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLGKSAE 100
            LT  EKLQ +NH P++ V VHL+VEDC  RF +  ++ELI+++E+ L    E
Sbjct:   79 LTPAEKLQFINHVPVELVDVHLIVEDCAGRFSEAQIDELIQIVEQTLAHKPE 130          
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: A0A8K0KBH2_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0KBH2_LADFU)

HSP 1 Score: 53.1 bits (126), Expect = 1.410e-6
Identity = 30/78 (38.46%), Postives = 45/78 (57.69%), Query Frame = 0
Query:   18 RYLSATPAGEQTRESLSACWRALSEHPHFCRLTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHL 95
            +YL  TP   QT ES+    +A++       LT  EKL +VN RP  PV + L++E+   R  D  VE+L+E++ +HL
Sbjct:   45 KYLKGTPCCNQTPESIQNFLKAVAPFG----LTKAEKLMLVNLRPSTPVEIQLVIEESEERMTDAQVEQLLEVIGQHL 118          
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: A0A397ECQ9_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397ECQ9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 4.750e-6
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 0
Query:   49 LTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLGKSAED 101
            LT  EKLQ +NH P++ V VHL++EDC  R  +  VEEL+ +  E LG + +D
Sbjct:   74 LTNAEKLQFINHCPMELVDVHLIIEDCAERLTEVQVEELMAITAETLGATDDD 126          
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: A0A485KMP9_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A485KMP9_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 5.100e-6
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 0
Query:   49 LTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLGKSAED 101
            LT  EKLQ +NH P++ V VHL++EDC  R  +  VEEL+ +  E LG + +D
Sbjct:   78 LTNAEKLQFINHCPMELVDVHLIIEDCAERLTEVQVEELMAITAETLGATDDD 130          
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: M4C541_HYAAE (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C541_HYAAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.320e-5
Identity = 23/48 (47.92%), Postives = 34/48 (70.83%), Query Frame = 0
Query:   49 LTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLG 96
            LTA EKLQ +NH P++ V +HL+VEDC  R+ +  V+ LI+++E  L 
Sbjct:   80 LTAAEKLQFINHIPMELVDIHLIVEDCAGRYSETQVDTLIQIVERTLA 127          
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: UPI0006C98D66 (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C98D66)

HSP 1 Score: 50.4 bits (119), Expect = 1.460e-5
Identity = 30/80 (37.50%), Postives = 44/80 (55.00%), Query Frame = 0
Query:   18 RYLSATPAGEQTRESLSACWRALSEHPHFCRLTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLGK 97
            RYL  TP    T E + A   AL       +LT  EKL ++N  P + V + L+VED   R   E V EL++++++HLG+
Sbjct:   44 RYLEDTPCKRHTPEKIKAFLTALGPF----KLTKCEKLTLLNQCPTKDVDIQLIVEDSEDRLTVEQVNELLQIVDKHLGE 119          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G7U4_ECTSI6.910e-2570.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J1XR95_OWEFU2.070e-937.65DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
K3X3I4_GLOUD5.170e-751.02DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
A0A225VL34_9STRA6.050e-750.00DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
A0A5D6Y3B9_9STRA7.520e-748.08DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
A0A8K0KBH2_LADFU1.410e-638.46Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A397ECQ9_9STRA4.750e-647.17DNA-directed RNA polymerase III subunit RPC9 n=2 T... [more]
A0A485KMP9_9STRA5.100e-647.17DNA-directed RNA polymerase III subunit RPC9 n=4 T... [more]
M4C541_HYAAE1.320e-547.92DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]
UPI0006C98D661.460e-537.50DNA-directed RNA polymerase III subunit RPC9 n=1 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005574RNA polymerase subunit RPB4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 18..93
e-value: 1.7E-12
score: 47.8
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 5..96
e-value: 1.0E-14
score: 56.5
IPR038846DNA-directed RNA polymerase III subunit RPC9PANTHERPTHR15561CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEINcoord: 18..99
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 18..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2375contigH-paniculata_contig2375:16238..20360 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2375.6423.1mRNA_H-paniculata_contig2375.6423.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig2375 15824..21173 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig2375.6423.1 ID=prot_H-paniculata_contig2375.6423.1|Name=mRNA_H-paniculata_contig2375.6423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MYDLSDSEAVAAEGAAERYLSATPAGEQTRESLSACWRALSEHPHFCRLT
APEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLGKSAE
DS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005574RPB4/RPC9
IPR038324Rpb4/RPC9_sf
IPR038846RPC9
IPR010997HRDC-like_sf