|
|
Homology
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: D7G7U4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7U4_ECTSI) HSP 1 Score: 141 bits (356), Expect = 7.210e-37 Identity = 71/109 (65.14%), Postives = 83/109 (76.15%), Query Frame = 1
Query: 313 IAYDQLVTDFEALECVRARRKERKAGGAEKEPPDMYDLSDSEAVAAEGAAERYLSATPAGEQTRESLSACWRALSEHPHFCRLTAPEKLQMVNHRPLQPVGVHLMVEDC 639
+ YD+LV DFEALECVR +R+ R+AG A+KEPPD S A+AAE A ERYLS PA +TRE++SACWRALSEH HFCRLT PEKLQM+NHRP Q V VHL+ E
Sbjct: 4 VTYDRLVADFEALECVRRQRERREAGRAKKEPPDSG--SSGGALAAEEATERYLSKMPAARETREAVSACWRALSEHEHFCRLTTPEKLQMINHRPSQAVAVHLVSEQA 110
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: A0A8J1XR95_OWEFU (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XR95_OWEFU) HSP 1 Score: 60.1 bits (144), Expect = 2.770e-7 Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 466 RYLSATPAGEQTRESLSACWRALSEHPHFCRLTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLGKSAE 714
+YL TP +QT E ++ +AL+ +LT EKLQ++NHRP V + L+VE+ R + +E+L++++ EHLG E
Sbjct: 49 KYLENTPCKDQTPEIVANFMKALAPF----KLTKAEKLQLLNHRPTSAVEIQLLVEESEERLTEAQIEQLLDVIVEHLGSDPE 127
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: K3X3I4_GLOUD (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X3I4_GLOUD) HSP 1 Score: 54.3 bits (129), Expect = 3.030e-5 Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1
Query: 556 RLTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLG 702
+LT EKLQ +NH P++ V VHL+VEDC RF + +EELI+++E+ L
Sbjct: 78 QLTPAEKLQFINHIPVELVDVHLIVEDCAGRFSEAQIEELIQIVEQTLA 126
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: A0A225VL34_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VL34_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 3.640e-5 Identity = 24/48 (50.00%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 559 LTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLG 702
LT+ EKLQ +NH P++ V +HL++EDC RF + V+ELI ++E LG
Sbjct: 80 LTSAEKLQFINHIPMELVDIHLIIEDCAGRFSETQVDELIRIVERTLG 127
BLAST of mRNA_H-paniculata_contig2375.6423.1 vs. uniprot
Match: A0A5D6Y3B9_9STRA (DNA-directed RNA polymerase III subunit RPC9 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3B9_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 5.850e-5 Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 1
Query: 559 LTAPEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLGKSAE 714
LT EKLQ +NH P++ V VHL+VEDC RF + ++ELI+++E+ L E
Sbjct: 79 LTPAEKLQFINHVPVELVDVHLIVEDCAGRFSEAQIDELIQIVEQTLAHKPE 130
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Nematoda |
| Seed ortholog score | 62.8 |
| Seed ortholog evalue | 1.1e-07 |
| Seed eggNOG ortholog | 6326.BUX.s01653.99 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | DNA-directed RNA-polymerase II subunit |
| EggNOG OGs | 1KX51@119089,3A8AJ@33154,3BU6M@33208,3DAMV@33213,40EJW@6231,KOG4168@1,KOG4168@2759 |
| Ec32 ortholog description | RNA polymerase II, Rpb4 |
| Ec32 ortholog | Ec-06_000280.1 |
| COG Functional cat. | K |
| Best tax level | Chromadorea |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 1536 |
| Cds size | 309 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2375.6423.1 >prot_H-paniculata_contig2375.6423.1 ID=prot_H-paniculata_contig2375.6423.1|Name=mRNA_H-paniculata_contig2375.6423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MYDLSDSEAVAAEGAAERYLSATPAGEQTRESLSACWRALSEHPHFCRLT
APEKLQMVNHRPLQPVGVHLMVEDCHRRFKDELVEELIELLEEHLGKSAE
DS* back to topmRNA from alignment at H-paniculata_contig2375:15824..21173+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2375.6423.1 ID=mRNA_H-paniculata_contig2375.6423.1|Name=mRNA_H-paniculata_contig2375.6423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5350bp|location=Sequence derived from alignment at H-paniculata_contig2375:15824..21173+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAGTTTATAGTCGCTTGATCAACCAGTCTCTGTACGTGTGGGAGTGCA
CTATTCATTGTTTGTAATGCAGTTCTCCATAAGATTGCCGGAGACGACAT
AATACACACATACAGAGATCGTGCCGCACAGATTATAGTGGCTGCCAAAG
GTGGATTGTATTCTGAACAGCGGCATGACTGCAGCACTGTTGTTGTTATT
GTTTTTGTACTGTCATCTACTGAAAAAGTTAGATGCATGTTCGATGTCCA
CCATGGCCCACTGATGATGGCATGTCCAACGTGTCCAATACGTCTCGTCA
TACACGTGCAGGATAGCATATGACCAGCTTGTAACAGACTTCGAAGCACT
AGAGTGCGTGCGAGCCCGACGTAAGGAGCGAAAAGCAGGCGGGGCGGAAA
AAGAGCCTCCAGACATGTATGACTTGAGCGATAGCGAGGCCGTTGCGGCC
GAGGGAGCGGCGGAACGATACCTATCGGCCACCCCCGCTGGCGAGCAAAC
CAGAGAGTCGGTGAGATGAGGGGGAGGGGGGTGGGCTGGGGGTGGGCTGG
GAGGGAGGGGGTGTAGCGCACATTTGACTTTCGAGTGAGATGGGGAAGTG
CACTCTCTCTATATATAGTGTTTGACGGATCTATGTTGGTGCTTCAGGGG
GCTCTAGCCGAAGAGTGCAGTTTTGGACCAAGCCTACTCTTTACCGGACT
TTTTGTTTTTTGCCCTTCCGGCGGGGCTTCGCGTATATTACGATTTGGTT
ATTTTCCATGTAGGTAGAAATCCGAATTTCTTGACACCCACGAAACAAGA
AAAGTGTACAATTCGAGTTGCTCATTTTTCAATGTAAAAAATGGCCTTTT
TTTCATACTTGAAAAGAAATATATATGGGGAAAAATATTTAGTGAAGGAA
TGGTTAATAGGCCTTTTGAGCGTCGGGCGATGTTTCGGAACAAATAACAT
CTGATAAGTCCCACCGGAAAAAAGGATGGGAAGTCGTTTTCGTACAAGGG
GGGGGGGGGTAGGGGGGTGGCTGTTTGGCGTTCCACGGTGCCTTACCAAA
CTTTCGGTCGTGGCAAAGGGTATTTCGTTTGTTGAAGAAGGGTCGAGTAC
AGACTATAGACTGAACGGATCGAATCAAGGAATTTCTCAGAAAAAGATAC
CTTTTTAGCTGGATGGTCCATAGGTATATTACCTACTCTGCGAGCATGGT
TTTCGTCCATGATCATGACAGCGATCATGGCAGCGTAGCTGTGCAGCACC
GTAGAATCGACTGCACGTGAACAACACGTCGCGTGAGGATGTTTCGAGCG
CTGTAGTCATGGCGCGCTGAACCATACCAAGTGCCCCCTGTGCTGCCTAT
GCTGTCAATAATCGACTGTATAATCCGCTGCAGCTAGCTCCCAGTTCCTG
TAATCATTTGATAGGCGTCATGTCAGCAAAAGTCCGACCCGATTTTTCTT
GAGATTTTAGGGGAACATGTATTGATGGTTCATTTGTGGAGACGGCGTCC
GAAGGGGTAAAGGTAAAGTTAATGGTGTATCGAGGTTACTGTAATCTCGA
TGTGTGTAACTGGGAAAGCAAGCTAAGGGCCTTTGTGCAGGAGCGCTCGT
TGACTGGCTTTGTTTCAAACTTCAGGTCGGAAAATTTAATGAAACGGAAA
ACGGTTATAGGGCTCGAGCTAGAGCTATCTATAGACATACGTGGCATGTA
CTGAATTCCCACGTAATGGTATCCGTTTTCCGATATTTCGCTCACGGAAC
AACAGGACGGTGAGGGTCCGAATGCCGCATTGAGCTCTGCCTCGAAGTCA
ATTTGTCCATGTCTGTCTCTCTTCGCTCGTTTTTTTTTCTTGTGTATTGG
GGACACGCTGTTTGCCCGTGAGCAAGTACTTGGATTTTTTTCCAAGTATT
GAGATATTGCAGTTTACTGTTCTGCCTGGTGTGCAGTTTTCATCATCATG
GTAATCAATTGTGATATCCCTCTGACGATACAATTGGATTGAAACGACGG
GTCGCTTATCATACGATATCTTTGATTGATATTTCGACACCGCTTTAAAT
TTCTTGTACGTTAACCCTCTCGAATGATTCGGTACAAAAACTTGCAGAGG
TAGTTGTAGTAGCAGATAAATCCACGTATCATTTAATAACACGGCATCTA
ATCATCATGCATCATACAAATGAAGTGACTCTCGTGATCACAAAGGCAAT
AACATTTTTTCGATGGTCTCAACCTCGTGATTTCATTTCTTTCTTGTTTA
TTGCCGCAGCTTTCTGCGTGCTGGCGGGCTCTCTCGGAGCACCCGCACTT
CTGCAGGCTAACGGCACCCGAAAAACTTCAAATGGTCAACCATCGCCCGC
TGCAACCTGTAGGGGTTCACTTGGTGAGCGAACGGCCCCGCTTGACCCAT
TTGTATTTTTGTCCGACACATTGGTCCACTGGCTGTACCACATACAGGAT
TCCTCTGGTCATGGCTTGTTTTTGTTTGACGCATGTTTTGGGTTAGCTCT
AGTTTCAGTCAGCCGCACCAGGTATCGTTGGGCGGTCCTTGCAAGTTTGA
AAGTGTCGACTCTTGCTTTCTCCAACTCCCCCAAAACACAGTTTACAAGC
GCCGTAGTATGTAAGTTGTATAGGGCATACTTGATATCACCTCTAATTTT
AACCCTTCGGAAGCCGGAGGCTGTTTTGCAGCAAACGGAGCATCGGATAG
TCCCGTCAGCAAGGGAGGGGATAGACGGGTAGGATTCAAGGCGTTTGGCG
CTGGATTATGACCAAGGAAGTTCCCGCCGTAACATACACATGCATTCATT
TCGTTGAAGTATTGCAAATAGAATCCCCAACTGGTCCCCATCCGTACTCG
AAAGGTCAAATACACATAGAATCAGTGAAAATATCACAACAGACCAACCG
ATGGGCTGGCTGCATGGTCCGTGCCCGTGCACCACCACCAGCTGCGAGTA
TGAGTTCCATACATGGTTGTAACTGCGTCGACGGGGTTCGTTTGGATTTA
TGCCTTGATTATCCCGGGACACAGCTGTACACTTTTAGTAGTAACAGGCT
GTACTTATACCGCATGTCGCGCACCAGTATGTATGAATCCGGCGCTGCAA
TTTTGGTGCACAAAACCATGCCAGCTCCTGGCTATGCTGTCTATCCTGTC
TGTAGTGGGCTTTCTGAATAGCGATAGCTCTCGCTCTCCTCGTAGTCATA
TGATAGATATGCCTTTCGTCAGAAAAAACACGCCCGGTTTTTCATTGGTC
AAGACCGGTTAAAGCGATAAAATTATAAACACCACCCAGTTACTTAACAT
CTGGTAGGTCAGAACGGCGATTGAGCATTCAACGATTATCCAAGTCGCAA
TTTTGTGACTCCTCTAGGTCTGTCCGTTGACATCCACTTTCGCTCGTGGA
TAATCTCCGCGCCACCACACTGGGGCAATCCGCGACTGTACTACTGTCGA
CACCTCCTCGTCGATGGTGATTCTCCACACAAGCCCTCTTATCTTCAATA
TTTGGGATTTTTCTCTACTCGTGTGCGCACGTGTCGTTATGTATACCTGA
TTGTGATGCAATAGTTTGTACCTATCGCCGTGCTTGCTCTGCTGGCACAG
GAAGGCAAGACCATCATTGACCATCGTCGCTGACGTGGCACTGGAGTACG
TACCCGTAGTCGACATAATATAGCCCAGTACAGCCAACCCGTTTTAGTAT
TTCATCTTGGATCTCTTTGAACCGAACTTGGCGGTGATATCGATACTTAA
CTTCCTGTACATGATTTATCATGATGTCTCGCTACCCGTGCTCTGTCGCA
GGGGCGAGTCTTGTTTGCTGGTGAAATCGAATTTGAAATCGACCAGAACA
GGGGGAGGGGCATAGGAGGGGTAAAAAATCCCTGGTAAGTAGTAACGCCG
CCTACGGTACTAAATACTGAATTAGGTTCTCTGTTATCGGTGATTGCTAC
CAGCAGCGCTGCCGTGGCCGCCCAGAGAATACTATGATTGTTTGCTGCGA
TGTATGTGTGCCCTGTTTCGGGAATCTGCGCAGATGGTCGAGGACTGCCA
TCGGAGATTTAAAGACGAGCTTGTGGAAGAACTCATCGAGCTTCTGGAGG
AACACGTGAGTATTACCCAGAAATGTTGCCCACTTCGAAACCAATCTCTT
CTCAGTAAGAATTCATGGCCATATCCATGATGATCGCGCAGCTATGGTAC
GATCTGGGTATCATCTCCATCAACCAAAAACCTCAAAGCAATCATCAAAT
ATCCACAGTATCCTCCCCAATAATTAGTCGTCTATTTTGTATTTTGTTTT
GTTTTTACACAGGGAGGACATACCATGCGGTAATATATCTTGTCGCTATA
CGATGTCTGTGTCAACATAATTCATTGTCCCTACGTTGTCAGGGTACCAG
TAGCTTCTCCGCAGACATTTCTATCATATGTGTAACGATTATTGGAAGTC
AAAGAGCTCACCTTAGTCCCGCCGCATAAACTCTCTGTTCCCCGTTTTCC
GCATGTGAAGCTTGGAAAGTCGGCTGAGGACTCATGACCCACCCCACTCT
TTCATAGGAGCCAAGGAGTAACGACAACGATGGACTAGCGTACCCCAGAG
TACAAGAATAAAAAGCAGCTCCTTCGTTGATGAACATTCCTCCGAGTACG
GTGCTTTTTTCTTGAGGCGACACCGGCAGTTTTGTCGTAGGGAAGATCTT
GATGTTGTCGAGATAGTAGTCTACATGTATCCATTGATGAAGATTATGAT
AGACGTGCCCTGCTCTTTGGATAGTAGTACGACAGTAGTGCAGGCGGGAA
CTTGCCCTCTGAAGAAGGTCGAGCTTGAAAAACGTGATCGCCAGCAGGAG
AGGTGATATGCAATGTATATTGTAAGCTAAGGTTTCTCTCCTGCTGGACC
TGCGCGGCGATTTTCACGTCACAGTAGAGCACTCCACGTGGGGATGACCG
CCTGCTGGGTACAGCGTACCTGCTATATGTGTGCCACGGCCTGCCATGAT
GCGATATGGTAATATAATTCTTAAATTTTCTAGAAAGCTCGTTGGTTATA
GTTCAGCGCATGTTATTTAAGGACAGAGTATTTGTTTAGCGGTTGAACAT
TTTTTCAGGCTACAGCTCGTTGTTGGATTGGGTGCTACTAGATGGGGCGA
ACGACCGTGGCGCAGCCAAAGTTACTTTTGCGGCATTCTCATTCAAGGAG
GCTCTCGCCTTGTTTTGGTTACAGTGGATACATGGTCTTACTGTGGAGAA
ATTTTGTATTGGTATTTTGTGTAGAAGGGTAGTTGATTAGATCTGAACCA
TAAGGCAGCCCTTCAGATGCTACTTGGATTGCAATATAACTAGTCCCCTC
back to topCoding sequence (CDS) from alignment at H-paniculata_contig2375:15824..21173+ >mRNA_H-paniculata_contig2375.6423.1 ID=mRNA_H-paniculata_contig2375.6423.1|Name=mRNA_H-paniculata_contig2375.6423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig2375:15824..21173+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTATGACTTGAGCGATAGCGAGGCCGTTGCGGCCGAGGGAGCGGCGGA
ACGATACCTATCGGCCACCCCCGCTGGCGAGCAAACCAGAGAGTCGATGT
ATGACTTGAGCGATAGCGAGGCCGTTGCGGCCGAGGGAGCGGCGGAACGA
TACCTATCGGCCACCCCCGCTGGCGAGCAAACCAGAGAGTCGCTTTCTGC
GTGCTGGCGGGCTCTCTCGGAGCACCCGCACTTCTGCAGGCTAACGGCAC
CCGAAAAACTTCAAATGGTCAACCATCGCCCGCTGCAACCTGTAGGGGTT
CACTTGCTTTCTGCGTGCTGGCGGGCTCTCTCGGAGCACCCGCACTTCTG
CAGGCTAACGGCACCCGAAAAACTTCAAATGGTCAACCATCGCCCGCTGC
AACCTGTAGGGGTTCACTTGATGGTCGAGGACTGCCATCGGAGATTTAAA
GACGAGCTTGTGGAAGAACTCATCGAGCTTCTGGAGGAACACATGGTCGA
GGACTGCCATCGGAGATTTAAAGACGAGCTTGTGGAAGAACTCATCGAGC
TTCTGGAGGAACACCTTGGAAAGTCGGCTGAGGACTCATGACTTGGAAAG
TCGGCTGAGGACTCATGA back to top
|