mRNA_H-paniculata_contig2373.6416.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2373.6416.1
Unique NamemRNA_H-paniculata_contig2373.6416.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2373.6416.1 vs. uniprot
Match: D8LNC2_ECTSI (COP9 signalosome complex subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNC2_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.720e-12
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:    1 QEREWDQACSAFFQSFKNYDEAGDPERLQVHVYYV 105
            QEREWDQAC+AFFQSFKNYDEAGDPERLQV  Y V
Sbjct:  275 QEREWDQACTAFFQSFKNYDEAGDPERLQVLKYLV 309
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BLAST of mRNA_H-paniculata_contig2373.6416.1 vs. uniprot
Match: A0A7S2V1L2_9STRA (COP9 signalosome complex subunit 2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L2_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 3.390e-7
Identity = 23/35 (65.71%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 QEREWDQACSAFFQSFKNYDEAGDPERLQVHVYYV 105
            QEREW+ AC++FFQSFK YDEAG+P RL    Y V
Sbjct:   13 QEREWEHACTSFFQSFKMYDEAGEPRRLACLQYLV 47
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BLAST of mRNA_H-paniculata_contig2373.6416.1 vs. uniprot
Match: A0A1D8NNR7_YARLL (PCI domain-containing protein n=5 Tax=Yarrowia TaxID=4951 RepID=A0A1D8NNR7_YARLL)

HSP 1 Score: 53.1 bits (126), Expect = 4.620e-7
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 1 
Query:    4 EREWDQACSAFFQSFKNYDEAGDPERLQVHVYYV 105
            E+ WD+AC  FFQSFKNYDEAG P ++Q+  Y V
Sbjct:  271 EKRWDKACEEFFQSFKNYDEAGSPAKIQILKYLV 304
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BLAST of mRNA_H-paniculata_contig2373.6416.1 vs. uniprot
Match: A0A5C3R569_9AGAR (COP9 signalosome complex subunit 2 n=1 Tax=Pterula gracilis TaxID=1884261 RepID=A0A5C3R569_9AGAR)

HSP 1 Score: 52.4 bits (124), Expect = 8.670e-7
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    4 EREWDQACSAFFQSFKNYDEAGDPERLQVHVYYV 105
            ER+WD+A   FF+SFKNYDEAG P+R+QV  Y V
Sbjct:  255 ERQWDRASEDFFESFKNYDEAGSPQRIQVLKYLV 288
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BLAST of mRNA_H-paniculata_contig2373.6416.1 vs. uniprot
Match: A0A261Y4T6_9FUNG (COP9 signalosome complex subunit 2 n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261Y4T6_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 1.190e-6
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    4 EREWDQACSAFFQSFKNYDEAGDPERLQVHVYYV 105
            E+EWD+A + FF+SFKNYDEAG P+R+QV  Y V
Sbjct:  249 EKEWDKAQTDFFESFKNYDEAGSPQRIQVLKYLV 282
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BLAST of mRNA_H-paniculata_contig2373.6416.1 vs. uniprot
Match: A0A397UQX1_9GLOM (COP9 signalosome complex subunit 2 n=14 Tax=Eukaryota TaxID=2759 RepID=A0A397UQX1_9GLOM)

HSP 1 Score: 52.0 bits (123), Expect = 1.190e-6
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    4 EREWDQACSAFFQSFKNYDEAGDPERLQVHVYYV 105
            E+EWD+A + FF+SFKNYDEAG P+R+QV  Y V
Sbjct:  248 EKEWDKAQTDFFESFKNYDEAGSPQRIQVLKYLV 281
[Close]
BLAST of mRNA_H-paniculata_contig2373.6416.1 vs. uniprot
Match: A0A1X2GPE6_9FUNG (COP9 signalosome complex subunit 2 n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GPE6_9FUNG)

HSP 1 Score: 52.0 bits (123), Expect = 1.190e-6
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    4 EREWDQACSAFFQSFKNYDEAGDPERLQVHVYYV 105
            E++W+QA S FF+SFKNYDEAG P+R+QV  Y V
Sbjct:  247 EKQWEQAQSDFFESFKNYDEAGSPQRIQVLKYLV 280
[Close]
BLAST of mRNA_H-paniculata_contig2373.6416.1 vs. uniprot
Match: A0A8H7VRT4_9FUNG (COP9 signalosome complex subunit 2 n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VRT4_9FUNG)

HSP 1 Score: 51.6 bits (122), Expect = 1.620e-6
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    4 EREWDQACSAFFQSFKNYDEAGDPERLQVHVYYV 105
            E+EWD A + FF+SFKNYDEAG P+R+QV  Y V
Sbjct:  247 EKEWDMAQTDFFESFKNYDEAGSPQRIQVLKYLV 280
[Close]
BLAST of mRNA_H-paniculata_contig2373.6416.1 vs. uniprot
Match: A0A433D801_9FUNG (COP9 signalosome complex subunit 2 n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433D801_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 2.220e-6
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    4 EREWDQACSAFFQSFKNYDEAGDPERLQVHVYYV 105
            E EWD+A + FF+SFKNYDEAG P+R+QV  Y V
Sbjct:  272 EEEWDKAQTDFFESFKNYDEAGSPQRIQVLKYLV 305
[Close]
BLAST of mRNA_H-paniculata_contig2373.6416.1 vs. uniprot
Match: A0A433QQP7_9FUNG (Uncharacterized protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QQP7_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 2.220e-6
Identity = 22/34 (64.71%), Postives = 27/34 (79.41%), Query Frame = 1 
Query:    4 EREWDQACSAFFQSFKNYDEAGDPERLQVHVYYV 105
            E EWD+A + FF+SFKNYDEAG P+R+QV  Y V
Sbjct:  305 EEEWDKAQTDFFESFKNYDEAGSPQRIQVLKYLV 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2373.6416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNC2_ECTSI1.720e-1288.57COP9 signalosome complex subunit 2 n=2 Tax=Ectocar... [more]
A0A7S2V1L2_9STRA3.390e-765.71COP9 signalosome complex subunit 2 n=1 Tax=Fibroca... [more]
A0A1D8NNR7_YARLL4.620e-761.76PCI domain-containing protein n=5 Tax=Yarrowia Tax... [more]
A0A5C3R569_9AGAR8.670e-764.71COP9 signalosome complex subunit 2 n=1 Tax=Pterula... [more]
A0A261Y4T6_9FUNG1.190e-664.71COP9 signalosome complex subunit 2 n=1 Tax=Bifigur... [more]
A0A397UQX1_9GLOM1.190e-664.71COP9 signalosome complex subunit 2 n=14 Tax=Eukary... [more]
A0A1X2GPE6_9FUNG1.190e-664.71COP9 signalosome complex subunit 2 n=1 Tax=Hesselt... [more]
A0A8H7VRT4_9FUNG1.620e-664.71COP9 signalosome complex subunit 2 n=1 Tax=Mucor c... [more]
A0A433D801_9FUNG2.220e-664.71COP9 signalosome complex subunit 2 n=1 Tax=Jimgerd... [more]
A0A433QQP7_9FUNG2.220e-664.71Uncharacterized protein n=1 Tax=Jimgerdemannia fla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2373contigH-paniculata_contig2373:202..312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.6
Seed ortholog evalue7.2e-10
Seed eggNOG ortholog2880.D8LNC2
Preferred nameCOPS2
KEGG koko:K12176
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000122,GO:0000338,GO:0000715,GO:0000909,GO:0002009,GO:0003006,GO:0003674,GO:0003712,GO:0003714,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006508,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007281,GO:0007282,GO:0007283,GO:0007292,GO:0007293,GO:0007399,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008180,GO:0008230,GO:0008231,GO:0008283,GO:0008356,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0014706,GO:0016043,GO:0016070,GO:0016333,GO:0016922,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030582,GO:0030584,GO:0030718,GO:0030727,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031647,GO:0031935,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032991,GO:0033043,GO:0033044,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0035914,GO:0036099,GO:0036211,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043235,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044798,GO:0045892,GO:0045934,GO:0046483,GO:0046983,GO:0048134,GO:0048135,GO:0048138,GO:0048140,GO:0048142,GO:0048232,GO:0048468,GO:0048477,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048646,GO:0048699,GO:0048729,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051128,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051301,GO:0051427,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0060537,GO:0060538,GO:0060968,GO:0061061,GO:0061458,GO:0065007,GO:0065008,GO:0070013,GO:0070646,GO:0070647,GO:0070791,GO:0071704,GO:0071840,GO:0075259,GO:0080090,GO:0090052,GO:0090054,GO:0090304,GO:0090575,GO:0097659,GO:0098727,GO:0140110,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein deneddylation
EggNOG OGsCOG5159@1,KOG1464@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size111
Cds size111
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.1397345-CDS-H-paniculata_contig2373:201..3121622929676.1397345-CDS-H-paniculata_contig2373:201..312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2373 202..312 -
1691480962.5656176-CDS-H-paniculata_contig2373:201..3121691480962.5656176-CDS-H-paniculata_contig2373:201..312Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2373 202..312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2373.6416.1prot_H-paniculata_contig2373.6416.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2373 202..312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2373.6416.1

>prot_H-paniculata_contig2373.6416.1 ID=prot_H-paniculata_contig2373.6416.1|Name=mRNA_H-paniculata_contig2373.6416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=37bp
QEREWDQACSAFFQSFKNYDEAGDPERLQVHVYYVW*
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mRNA from alignment at H-paniculata_contig2373:202..312-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2373.6416.1 ID=mRNA_H-paniculata_contig2373.6416.1|Name=mRNA_H-paniculata_contig2373.6416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=111bp|location=Sequence derived from alignment at H-paniculata_contig2373:202..312- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACGAGAATGGGATCAAGCTTGCTCGGCATTTTTCCAGAGCTTCAA
GAACTACGACGAGGCGGGGGATCCAGAACGGCTACAGGTACATGTGTACT
ATGTATGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2373:202..312-

>mRNA_H-paniculata_contig2373.6416.1 ID=mRNA_H-paniculata_contig2373.6416.1|Name=mRNA_H-paniculata_contig2373.6416.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=222bp|location=Sequence derived from alignment at H-paniculata_contig2373:202..312- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAACGAGAATGGGATCAAGCTTGCTCGGCATTTTTCCAGAGCTTCAA
GAACTACGACGAGGCGGGGGATCCAGAACGGCTACAGGTACATGTGTACT
ATGTATGGTAACAGGAACGAGAATGGGATCAAGCTTGCTCGGCATTTTTC
CAGAGCTTCAAGAACTACGACGAGGCGGGGGATCCAGAACGGCTACAGGT
ACATGTGTACTATGTATGGTAA
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