mRNA_H-paniculata_contig23729.6415.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23729.6415.1
Unique NamemRNA_H-paniculata_contig23729.6415.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23729.6415.1 vs. uniprot
Match: A0A7S2Y4F2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4F2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.180e-15
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 DSLSADSKTLMLVCISPVVGNAEESFCSLNFASRVRTVQLGKVQKH 138
            DSLS DSKTLM VCISPV+ NA+ESFCSLNFASRVRTV+LGK  K+
Sbjct:   38 DSLSQDSKTLMFVCISPVMYNADESFCSLNFASRVRTVELGKASKN 83
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BLAST of mRNA_H-paniculata_contig23729.6415.1 vs. uniprot
Match: A0A813A2Y1_SYMMI (Kifc3 protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A2Y1_SYMMI)

HSP 1 Score: 77.4 bits (189), Expect = 5.110e-15
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:    1 DSLSADSKTLMLVCISPVVGNAEESFCSLNFASRVRTVQLGKVQKHHGECTPMPKAG 171
            DSLS DSKTLM VC+SPVV N+EE+FCSLNFASRVR+V+LGK  K+ G+      AG
Sbjct:  106 DSLSQDSKTLMFVCVSPVVYNSEETFCSLNFASRVRSVELGKASKNVGQAPGATGAG 162
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BLAST of mRNA_H-paniculata_contig23729.6415.1 vs. uniprot
Match: D7FLM8_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.290e-14
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 DSLSADSKTLMLVCISPVVGNAEESFCSLNFASRVRTVQLGKVQKH 138
            DSLSADSKTLMLVC+SPVV +AEES+CSLNFA+RVRTV+LGK  KH
Sbjct:  726 DSLSADSKTLMLVCVSPVVQSAEESWCSLNFAARVRTVELGKAHKH 771
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BLAST of mRNA_H-paniculata_contig23729.6415.1 vs. uniprot
Match: A0A836CB76_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB76_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 5.990e-14
Identity = 37/47 (78.72%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    1 DSLSADSKTLMLVCISPVVGNAEESFCSLNFASRVRTVQLGKVQKHH 141
            DSL+ADSKTLM VCISPV+ NAEE+FCSLNFASRVRTV+LGK    H
Sbjct:  293 DSLAADSKTLMFVCISPVIYNAEETFCSLNFASRVRTVELGKATVRH 339
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BLAST of mRNA_H-paniculata_contig23729.6415.1 vs. uniprot
Match: A0A7S2GC58_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GC58_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 8.260e-13
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 1 
Query:    1 DSLSADSKTLMLVCISPVVGNAEESFCSLNFASRVRTVQLGKVQKH 138
            DSLS DSKTLM VCISPV+ NAEE+FCSLNFA RV +V+LGK  K+
Sbjct:  105 DSLSGDSKTLMFVCISPVMYNAEETFCSLNFAQRVNSVELGKATKN 150
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BLAST of mRNA_H-paniculata_contig23729.6415.1 vs. uniprot
Match: A0A7S3HLW0_9STRA (Kinesin-like protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLW0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.250e-12
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 DSLSADSKTLMLVCISPVVGNAEESFCSLNFASRVRTVQLGKVQKH--HGECTPMPKAG 171
            DS+S DSKTLM+VC+SPV+ N+EE+FCSLNFA RVRTV+LG+  K    G  TP    G
Sbjct:  294 DSISQDSKTLMIVCVSPVLYNSEETFCSLNFAGRVRTVELGRASKTITSGTATPXXXXG 352
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BLAST of mRNA_H-paniculata_contig23729.6415.1 vs. uniprot
Match: A0A2R5G4J1_9STRA (Kinesin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4J1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.590e-12
Identity = 35/46 (76.09%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 DSLSADSKTLMLVCISPVVGNAEESFCSLNFASRVRTVQLGKVQKH 138
            DSLS DSKTLM V +SPV  NAEESFCSLNFA+R RTV+LGK  KH
Sbjct:  836 DSLSQDSKTLMFVQVSPVKTNAEESFCSLNFAARARTVELGKASKH 881
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BLAST of mRNA_H-paniculata_contig23729.6415.1 vs. uniprot
Match: A0A6U1BUB9_9STRA (Kinesin-like protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BUB9_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.560e-11
Identity = 31/46 (67.39%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 DSLSADSKTLMLVCISPVVGNAEESFCSLNFASRVRTVQLGKVQKH 138
            DSLS D+KTLM VC+SPV+ N+EE++CSL FA+RVRTV+LGK Q++
Sbjct:  663 DSLSGDAKTLMFVCVSPVIYNSEETYCSLTFAARVRTVELGKAQRN 708
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BLAST of mRNA_H-paniculata_contig23729.6415.1 vs. uniprot
Match: A0A7S3XUD6_HETAK (Kinesin-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUD6_HETAK)

HSP 1 Score: 70.9 bits (172), Expect = 1.750e-11
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 DSLSADSKTLMLVCISPVVGNAEESFCSLNFASRVRTVQLGKVQKHHGECTPMPKAGR-PPFSTNSSCSGTSPR 219
            DSLS DSKTLM VCISPV  N +E+FCSLNFA R R+V+LG+ Q++      +  +GR PP S++S  S  S R
Sbjct:  329 DSLSGDSKTLMFVCISPVAFNGDETFCSLNFAERARSVELGRAQRN------VTSSGRTPPNSSSSRASSVSRR 396
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BLAST of mRNA_H-paniculata_contig23729.6415.1 vs. uniprot
Match: A0A397DDK5_9STRA (Kinesin motor domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DDK5_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.380e-11
Identity = 33/51 (64.71%), Postives = 38/51 (74.51%), Query Frame = 1 
Query:    1 DSLSADSKTLMLVCISPVVGNAEESFCSLNFASRVRTVQLGKVQKHHGECT 153
            DSL  DSKTLM+ C SPV  NAEESFC+LNFASR R V++GK  KH  + T
Sbjct:  228 DSLGGDSKTLMVACSSPVDYNAEESFCTLNFASRARCVEMGKATKHVAKAT 278
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23729.6415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2Y4F2_9STRA2.180e-1580.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A813A2Y1_SYMMI5.110e-1566.67Kifc3 protein n=2 Tax=Symbiodinium microadriaticum... [more]
D7FLM8_ECTSI1.290e-1482.61Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A836CB76_9STRA5.990e-1478.72Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2GC58_9STRA8.260e-1373.91Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3HLW0_9STRA3.250e-1261.02Kinesin-like protein n=2 Tax=Spumella elongata Tax... [more]
A0A2R5G4J1_9STRA8.590e-1276.09Kinesin-like protein n=1 Tax=Hondaea fermentalgian... [more]
A0A6U1BUB9_9STRA1.560e-1167.39Kinesin-like protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XUD6_HETAK1.750e-1154.05Kinesin-like protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A397DDK5_9STRA3.380e-1164.71Kinesin motor domain-containing protein n=1 Tax=Ap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23729contigH-paniculata_contig23729:2269..3724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue7.3e-08
Seed eggNOG ortholog2880.D7FLM8
KEGG koko:K10406
Hectar predicted targeting categoryother localisation
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size457
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23729.6415.1prot_H-paniculata_contig23729.6415.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23729 2429..3694 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.9567227-UTR-H-paniculata_contig23729:2268..24281622929675.9567227-UTR-H-paniculata_contig23729:2268..2428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23729 2269..2428 -
1691480962.4313562-UTR-H-paniculata_contig23729:2268..24281691480962.4313562-UTR-H-paniculata_contig23729:2268..2428Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23729 2269..2428 -
1622929675.99946-UTR-H-paniculata_contig23729:3694..37241622929675.99946-UTR-H-paniculata_contig23729:3694..3724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23729 3695..3724 -
1691480962.4845219-UTR-H-paniculata_contig23729:3694..37241691480962.4845219-UTR-H-paniculata_contig23729:3694..3724Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23729 3695..3724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.9710217-CDS-H-paniculata_contig23729:2428..25991622929675.9710217-CDS-H-paniculata_contig23729:2428..2599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23729 2429..2599 -
1691480962.453495-CDS-H-paniculata_contig23729:2428..25991691480962.453495-CDS-H-paniculata_contig23729:2428..2599Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23729 2429..2599 -
1622929675.9872088-CDS-H-paniculata_contig23729:3598..36941622929675.9872088-CDS-H-paniculata_contig23729:3598..3694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23729 3599..3694 -
1691480962.4688196-CDS-H-paniculata_contig23729:3598..36941691480962.4688196-CDS-H-paniculata_contig23729:3598..3694Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23729 3599..3694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23729.6415.1

>prot_H-paniculata_contig23729.6415.1 ID=prot_H-paniculata_contig23729.6415.1|Name=mRNA_H-paniculata_contig23729.6415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MLVCISPVVGNAEESFCSLNFASRVRTVQLGKVQKHHGECTPMPKAGRPP
FSTNSSCSGTSPRTPQQQQGGYPSRAGRARGAAPTNPG*
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mRNA from alignment at H-paniculata_contig23729:2269..3724-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23729.6415.1 ID=mRNA_H-paniculata_contig23729.6415.1|Name=mRNA_H-paniculata_contig23729.6415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1456bp|location=Sequence derived from alignment at H-paniculata_contig23729:2269..3724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATTCTCTAAGCGCGGACTCCAAAACGTTGATGCTTGTGTGCATTAGCCC
GGTGGTCGGAAACGCTGAAGAGTCCTTTTGCTCTCTCAACTTCGCCTCGC
GTGTGCGGACGGTCCAGCTGGGCAAGGTGCGAATGAGTCATTTTCATGGT
GATCGATTGTCATGGGCAATAATAATGGCAAAAGTAGGTGTGGCTACTGG
GGTACCGTGTCCTACATGATTATACTTCTTGTTTTTCATTTATAGTGTTG
CGAAGGAGTTTAGGTTCGCGAAGCCGGTAACAACCTCAGAATTCTTGGGC
AAACTTTGATAGCCTGACCACAACGTGGGAGGTTGTGATTTTGACCTCTA
ATGCTCCACAAGGTACCCTCTGATCACCTTTGGGCCGTTTGAAAGTTTAT
TGATGTCCAATCACAACGGATTTTATGAGCTGGTGGATGCACTATTTGTT
GATTGTTCCCCAACCATTCAACTCTTTGCCCCCGCCGCCCTCCCCCCTCC
GACACCTACGTTGCATTCACTCATGAAACGCCATATATTGCATATGAAAA
CATCAGAGACGACGCGTGTCTGTCTCAAGCAAATTGCAACATAGATGCAG
ACATGAGGACAATGTATTTGCAAAAACGTCAAAGCTCGGCAGCGTTATCC
CTATCTGGTTGCTCGTGGTTGATAATATTCAGTGCGGTGGTAGCGTGCCG
CGCGCGCTGAACTACCAGCGAAATAAGACGAGAGACTTGGCGCTTCACGC
AATTCCATCCAAGTCTGAGCACGCCAGCAGTAGAGCCAGCCCCGCCCCTG
TATGCATCCCTTCGACCTCGCCCCCGCCCCCCCAAATTTTACGTGCAAAA
AAAGAAATACACTTTTTCGTGCGAATAGATCACTCCCCCTCTAATATGCT
AAGTTTTGAAATAGTCCAGCAACTTTACCCCCCCCCCCCCCCCCCGAACA
CACACAGCGAGAGTCAAGCAAGCTGTGTATCAAATCGTACGCACATGTGT
GCTCCATACGCATTGTTCCTTTATCCCTTTTCATGAAAGCAGTCTGAAAC
TCGATTATTTCCCGCTGCCGCTGCCGCCGCCGTGACGCCCTCCCTCCCAA
CATTAAAACGTGGCGCGTGATACAGGTCCAAAAACACCATGGCGAATGCA
CGCCGATGCCCAAGGCTGGACGGCCACCCTTTTCTACGAATAGCAGCTGT
TCGGGGACTAGCCCAAGAACCCCGCAGCAGCAACAAGGAGGTTATCCATC
ACGTGCGGGGCGTGCTCGCGGTGCTGCACCAACAAACCCCGGATGACTTC
AGCGTAGTGTAGTTCTGTTCACGCACTTGAGAGGTTGTGGACACAGTTCA
GGCGTATGCGACTTGTTGATGAGCATTGATGCTCGTCAGGGTCTGCGTGG
ATGGCCCCTGCGATGATCTCCGGCTATATCGGTAGAAGTCTCAGAGGAGA
AGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig23729:2269..3724-

>mRNA_H-paniculata_contig23729.6415.1 ID=mRNA_H-paniculata_contig23729.6415.1|Name=mRNA_H-paniculata_contig23729.6415.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig23729:2269..3724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTGTGTGCATTAGCCCGGTGGTCGGAAACGCTGAAGAGTCCTTTTG
CTCTCTCAACTTCGCCTCGCGTGTGCGGACGGTCCAGCTGGGCAAGATGC
TTGTGTGCATTAGCCCGGTGGTCGGAAACGCTGAAGAGTCCTTTTGCTCT
CTCAACTTCGCCTCGCGTGTGCGGACGGTCCAGCTGGGCAAGGTCCAAAA
ACACCATGGCGAATGCACGCCGATGCCCAAGGCTGGACGGCCACCCTTTT
CTACGAATAGCAGCTGTTCGGGGACTAGCCCAAGAACCCCGCAGCAGCAA
CAAGGAGGTTATCCATCACGTGCGGGGCGTGCTCGCGGTGCTGCACCAAC
AAACCCCGGATGAGTCCAAAAACACCATGGCGAATGCACGCCGATGCCCA
AGGCTGGACGGCCACCCTTTTCTACGAATAGCAGCTGTTCGGGGACTAGC
CCAAGAACCCCGCAGCAGCAACAAGGAGGTTATCCATCACGTGCGGGGCG
TGCTCGCGGTGCTGCACCAACAAACCCCGGATGA
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