mRNA_H-paniculata_contig23723.6414.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23723.6414.1
Unique NamemRNA_H-paniculata_contig23723.6414.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23723.6414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23723contigH-paniculata_contig23723:3228..3655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size428
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23723.6414.1prot_H-paniculata_contig23723.6414.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23723 3245..3571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.8825474-UTR-H-paniculata_contig23723:3227..32441622929675.8825474-UTR-H-paniculata_contig23723:3227..3244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23723 3228..3244 +
1691480962.3864512-UTR-H-paniculata_contig23723:3227..32441691480962.3864512-UTR-H-paniculata_contig23723:3227..3244Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23723 3228..3244 +
1622929675.9110522-UTR-H-paniculata_contig23723:3571..36551622929675.9110522-UTR-H-paniculata_contig23723:3571..3655Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23723 3572..3655 +
1691480962.4140868-UTR-H-paniculata_contig23723:3571..36551691480962.4140868-UTR-H-paniculata_contig23723:3571..3655Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23723 3572..3655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.897324-CDS-H-paniculata_contig23723:3244..35711622929675.897324-CDS-H-paniculata_contig23723:3244..3571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23723 3245..3571 +
1691480962.3949466-CDS-H-paniculata_contig23723:3244..35711691480962.3949466-CDS-H-paniculata_contig23723:3244..3571Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23723 3245..3571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23723.6414.1

>prot_H-paniculata_contig23723.6414.1 ID=prot_H-paniculata_contig23723.6414.1|Name=mRNA_H-paniculata_contig23723.6414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
MSARGQVRRNARRAGRGVGHTVCKLSLLQSVDYTSEPRTTTPLDPCWRYV
ADFNLHLNRLLDKIPTIGGTASCIVRSEDHISTPSYPFRGYTAESKLPLC
TLVSKTTS*
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mRNA from alignment at H-paniculata_contig23723:3228..3655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23723.6414.1 ID=mRNA_H-paniculata_contig23723.6414.1|Name=mRNA_H-paniculata_contig23723.6414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=428bp|location=Sequence derived from alignment at H-paniculata_contig23723:3228..3655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGGCTAGAGCTATCAATGTCTGCAAGAGGGCAGGTACGCAGAAATGCA
AGACGGGCGGGAAGGGGGGTGGGGCATACAGTTTGTAAATTGAGCCTGCT
ACAGTCAGTCGACTATACCTCTGAACCTCGTACCACAACTCCACTGGACC
CATGTTGGCGTTATGTAGCTGACTTCAATCTGCACTTGAACAGGCTTCTC
GACAAAATTCCAACAATCGGCGGTACAGCTAGTTGTATTGTACGCTCTGA
AGATCATATATCAACTCCGTCGTACCCATTTCGTGGCTACACAGCTGAAT
CCAAACTCCCCTTGTGTACACTCGTGAGCAAAACGACATCATGACCGATA
GATAAAGGGCGGACGGGGTGACGAAAGGAATCGATCAGTTAGAGTACGGG
AGCAGTCGATCAATCAGTCCAATAGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23723:3228..3655+

>mRNA_H-paniculata_contig23723.6414.1 ID=mRNA_H-paniculata_contig23723.6414.1|Name=mRNA_H-paniculata_contig23723.6414.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig23723:3228..3655+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGCAAGAGGGCAGGTACGCAGAAATGCAAGACGGGCGGGAAGGGG
GGTGGGGCATACAGTTTGTAAATTGAGCCTGCTACAGTCAGTCGACTATA
CCTCTGAACCTCGTACCACAACTCCACTGGACCCATGTTGGCGTTATGTA
GCTGACTTCAATCTGCACTTGAACAGGCTTCTCGACAAAATTCCAACAAT
CGGCGGTACAGCTAGTTGTATTGTACGCTCTGAAGATCATATATCAACTC
CGTCGTACCCATTTCGTGGCTACACAGCTGAATCCAAACTCCCCTTGTGT
ACACTCGTGAGCAAAACGACATCATGAATGTCTGCAAGAGGGCAGGTACG
CAGAAATGCAAGACGGGCGGGAAGGGGGGTGGGGCATACAGTTTGTAAAT
TGAGCCTGCTACAGTCAGTCGACTATACCTCTGAACCTCGTACCACAACT
CCACTGGACCCATGTTGGCGTTATGTAGCTGACTTCAATCTGCACTTGAA
CAGGCTTCTCGACAAAATTCCAACAATCGGCGGTACAGCTAGTTGTATTG
TACGCTCTGAAGATCATATATCAACTCCGTCGTACCCATTTCGTGGCTAC
ACAGCTGAATCCAAACTCCCCTTGTGTACACTCGTGAGCAAAACGACATC
ATGA
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