mRNA_H-paniculata_contig23705.6407.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23705.6407.1
Unique NamemRNA_H-paniculata_contig23705.6407.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23705.6407.1 vs. uniprot
Match: D7FN94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN94_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 9.320e-41
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:    1 TACGTENTVTRKYAQIRFETATGAFEVELEDVPAVFVVSHATGRYGKAGLLDLFVGAQLNILGRQMRLMQCDGPTARWLERELKSIIKTKAALVTAIEKEGEHVR 315
            T  GTENTV RK+A IR+ TA G+ EVELEDVPA+F VSHATGRYGK G +D+ VGAQL+ILGRQMRLMQCDG TA+WLE E+++I K KAAL+TA+E  G+ VR
Sbjct:  276 TTTGTENTVNRKHASIRYSTANGSLEVELEDVPAIFEVSHATGRYGKVGAVDIRVGAQLSILGRQMRLMQCDGVTAQWLESEVRAITKAKAALITAVEDGGDSVR 380
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BLAST of mRNA_H-paniculata_contig23705.6407.1 vs. uniprot
Match: A0A6H5KUJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.570e-21
Identity = 55/105 (52.38%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:    1 TACGTENTVTRKYAQIRFETATGAFEVELEDVPAVFVVSHATGRYGKAGLLDLFVGAQLNILGRQMRLMQCDGPTARWLERELKSIIKTKAALVTAIEKEGEHVR 315
            T  GTENTV RK+A IR+  A G+ EVELEDVPA+F VSHATGR  KA      V               CDG TA+WLE E+++I K KAAL+ AIE  G+ VR
Sbjct:  290 TTTGTENTVNRKHASIRYSAANGSLEVELEDVPAIFEVSHATGRQTKASGFVKCV---------------CDGVTAQWLESEVRAITKAKAALIAAIEDGGDSVR 379
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BLAST of mRNA_H-paniculata_contig23705.6407.1 vs. uniprot
Match: A0A7S2G3U3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G3U3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.010e-10
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:   31 RKYAQIRFETATGAFEVELEDVPAVFVVSHATGRYGKAGLLDLFVGAQLNILGRQMRLMQCDGPTARWLERELKSIIKTKAALVTAIEKEG 303
            R+   ++++  TG F V+L      + ++H  GRYG   + DLFVGA +NILG+   LMQ +  T+ W+E E K + K +  L   + K G
Sbjct:   42 RRELTLQYDVVTGEFLVKLSGTDKGYSLTHIMGRYGPVEIWDLFVGANINILGKPTTLMQANLKTSDWIEAEAKRLQKLQKQLGAELRKYG 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23705.6407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FN94_ECTSI9.320e-4169.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUJ0_9PHAE4.570e-2152.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G3U3_9STRA1.010e-1036.26Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23705contigH-paniculata_contig23705:2413..3724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003450.1
Exons3
Model size315
Cds size315
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23705.6407.1prot_H-paniculata_contig23705.6407.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23705 2413..3724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.0342057-CDS-H-paniculata_contig23705:2412..25171622929675.0342057-CDS-H-paniculata_contig23705:2412..2517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23705 2413..2517 -
1691480962.040075-CDS-H-paniculata_contig23705:2412..25171691480962.040075-CDS-H-paniculata_contig23705:2412..2517Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23705 2413..2517 -
1622929675.0513577-CDS-H-paniculata_contig23705:3042..31211622929675.0513577-CDS-H-paniculata_contig23705:3042..3121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23705 3043..3121 -
1691480962.0538173-CDS-H-paniculata_contig23705:3042..31211691480962.0538173-CDS-H-paniculata_contig23705:3042..3121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23705 3043..3121 -
1622929675.0645332-CDS-H-paniculata_contig23705:3593..37241622929675.0645332-CDS-H-paniculata_contig23705:3593..3724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23705 3594..3724 -
1691480962.062343-CDS-H-paniculata_contig23705:3593..37241691480962.062343-CDS-H-paniculata_contig23705:3593..3724Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23705 3594..3724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23705.6407.1

>prot_H-paniculata_contig23705.6407.1 ID=prot_H-paniculata_contig23705.6407.1|Name=mRNA_H-paniculata_contig23705.6407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
TACGTENTVTRKYAQIRFETATGAFEVELEDVPAVFVVSHATGRYGKAGL
LDLFVGAQLNILGRQMRLMQCDGPTARWLERELKSIIKTKAALVTAIEKE
GEHVR
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mRNA from alignment at H-paniculata_contig23705:2413..3724-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23705.6407.1 ID=mRNA_H-paniculata_contig23705.6407.1|Name=mRNA_H-paniculata_contig23705.6407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1312bp|location=Sequence derived from alignment at H-paniculata_contig23705:2413..3724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGCATGTGGCACAGAGAACACGGTGACCCGAAAATACGCACAGATTCG
TTTCGAGACCGCAACTGGCGCTTTTGAAGTGGAATTGGAAGACGTGCCGG
CTGTTTTCGTGGTATCCCATGCGACAGGAAGGTGACTATCAATACTCAAC
AGCGTATTTCGTCCATACAATGCGATTGGACAACATAGGTCTGTTCGAGG
CAGCGTTCGGAACTATATGACTTACCCGGAAGACTTGGGTACGGCACATT
GAACGACCAGGCAGTGAGAATCGAAAACGACTGCACGGAAGGCTGTATGG
ATTGAGCTGGGCTCCTGTAATATTCTTACCTTTTTCAACAGTCCAGATCG
AAGATTTCTAGTGTGCGTCATTCTGTTTTATACTTCAGATTCGAATGTTT
TCCCTTGAAATATGGATCAACTCGTGGTGATGAAAATTTGGAATCTGGCG
ATTGTTCCATTCTTCAATTGTCTCAGGAGGACAGGTGTATCAACGACGCC
GTAGGGGTTCTGAGCTGCCCAAGTTTTGGGGAAATCAGCTGTTCAACTAG
CTTTGACTCATGCACAGCTGCTGATTTTTCGCTTTCCTATTTCCTTCTGC
AAGGTATGGAAAGGCAGGGTTATTAGATCTCTTCGTGGGAGCGCAGCTCA
ACATTCTCGGGCGTCAGATGCGCCTAATGCAGGTATATGCGGACGTGCAG
ATGTGGTGTAGAGCACATCACTGCCCACAAAAGGAAAGCTGGTGTAGTAG
ACACCTGCCTGTCGCTAGAAGAAATTAATAATAGTCAGGTGTTGTTTTCT
CGCGGATACTGATGTACTACAAGGTCAGACCTGTCACAAACATCACTAGA
GCACGTCGTGGCTTATTGCGCTGTTTGTGGTGTAAATGTTGGTATGTTGT
CACATGTTTCGTCGCAGCAAGACGAGGAAAGTGTAGGTCAGCGACGATCT
TTCAATACACCCACGTTAATTGGTGGTGCTTTGTCCATTATTCCCGTGTC
GCAAAAATTGACGCAGGAGGCATCAACCTCGAGAGTCTGGTAACTACGCC
ATGTAGATCTGCAAACATTTTTGGTAGTTGTTTGTTTCACACCGTGTTGA
TAACCCTTTTCAGGTGAGAAGTTCAATCGAGTACTCCAAATATAAAGGGA
TTTTGTCCATATAAACTCAAAGAGAATCACTCCATGTGCGACCTCTGCGT
GCCTCAGTGTGACGGTCCTACCGCTCGGTGGTTGGAACGTGAGCTTAAAT
CCATTATCAAGACGAAAGCTGCGCTAGTGACCGCTATTGAGAAAGAGGGA
GAGCATGTGCGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23705:2413..3724-

>mRNA_H-paniculata_contig23705.6407.1 ID=mRNA_H-paniculata_contig23705.6407.1|Name=mRNA_H-paniculata_contig23705.6407.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig23705:2413..3724- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTGCATGTGGCACAGAGAACACGGTGACCCGAAAATACGCACAGATTCG
TTTCGAGACCGCAACTGGCGCTTTTGAAGTGGAATTGGAAGACGTGCCGG
CTGTTTTCGTGGTATCCCATGCGACAGGAAGACTGCATGTGGCACAGAGA
ACACGGTGACCCGAAAATACGCACAGATTCGTTTCGAGACCGCAACTGGC
GCTTTTGAAGTGGAATTGGAAGACGTGCCGGCTGTTTTCGTGGTATCCCA
TGCGACAGGAAGGTATGGAAAGGCAGGGTTATTAGATCTCTTCGTGGGAG
CGCAGCTCAACATTCTCGGGCGTCAGATGCGCCTAATGCAGGTATGGAAA
GGCAGGGTTATTAGATCTCTTCGTGGGAGCGCAGCTCAACATTCTCGGGC
GTCAGATGCGCCTAATGCAGTGTGACGGTCCTACCGCTCGGTGGTTGGAA
CGTGAGCTTAAATCCATTATCAAGACGAAAGCTGCGCTAGTGACCGCTAT
TGAGAAAGAGGGAGAGCATGTGCGATGTGACGGTCCTACCGCTCGGTGGT
TGGAACGTGAGCTTAAATCCATTATCAAGACGAAAGCTGCGCTAGTGACC
GCTATTGAGAAAGAGGGAGAGCATGTGCGA
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