mRNA_H-paniculata_contig2370.6406.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2370.6406.1
Unique NamemRNA_H-paniculata_contig2370.6406.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2370.6406.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 254 bits (650), Expect = 4.080e-85
Identity = 136/140 (97.14%), Postives = 138/140 (98.57%), Query Frame = 1 
Query:   46 LFHTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 465
            +  TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    3 ITETMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
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BLAST of mRNA_H-paniculata_contig2370.6406.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 253 bits (646), Expect = 1.360e-84
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   58 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 465
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
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BLAST of mRNA_H-paniculata_contig2370.6406.1 vs. uniprot
Match: A0A2M4CJ97_ANODA (Histone H3 (Fragment) n=2 Tax=Neoptera TaxID=33340 RepID=A0A2M4CJ97_ANODA)

HSP 1 Score: 252 bits (644), Expect = 4.100e-84
Identity = 135/143 (94.41%), Postives = 138/143 (96.50%), Query Frame = 1 
Query:   37 KSPLFHTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 465
            K P   TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    6 KHPEGRTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 148
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BLAST of mRNA_H-paniculata_contig2370.6406.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 252 bits (643), Expect = 6.230e-84
Identity = 135/136 (99.26%), Postives = 136/136 (100.00%), Query Frame = 1 
Query:   58 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 465
            MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   15 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_H-paniculata_contig2370.6406.1 vs. uniprot
Match: A0A4W5P680_9TELE (Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A4W5P680_9TELE)

HSP 1 Score: 251 bits (641), Expect = 8.980e-84
Identity = 133/139 (95.68%), Postives = 136/139 (97.84%), Query Frame = 1 
Query:   49 FHTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 465
             H MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    2 LHAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 140
[Close]
BLAST of mRNA_H-paniculata_contig2370.6406.1 vs. uniprot
Match: D2I0A9_AILME (Histone H3 (Fragment) n=2 Tax=Carnivora TaxID=33554 RepID=D2I0A9_AILME)

HSP 1 Score: 251 bits (641), Expect = 9.610e-84
Identity = 134/142 (94.37%), Postives = 137/142 (96.48%), Query Frame = 1 
Query:   40 SPLFHTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 465
            SP+   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    1 SPVSSEMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 142
[Close]
BLAST of mRNA_H-paniculata_contig2370.6406.1 vs. uniprot
Match: UPI001E6778CD (histone H3-like n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E6778CD)

HSP 1 Score: 252 bits (643), Expect = 1.000e-83
Identity = 134/141 (95.04%), Postives = 137/141 (97.16%), Query Frame = 1 
Query:   43 PLFHTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 465
            P   TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   24 PQLFTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 164
[Close]
BLAST of mRNA_H-paniculata_contig2370.6406.1 vs. uniprot
Match: A0A0C9RWZ2_9HYME (Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=33392 RepID=A0A0C9RWZ2_9HYME)

HSP 1 Score: 251 bits (641), Expect = 1.060e-83
Identity = 133/140 (95.00%), Postives = 137/140 (97.86%), Query Frame = 1 
Query:   46 LFHTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 465
            +F  MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    6 IFDAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 145
[Close]
BLAST of mRNA_H-paniculata_contig2370.6406.1 vs. uniprot
Match: A0A3B4AB48_9GOBI (Histone H3 n=2 Tax=Bilateria TaxID=33213 RepID=A0A3B4AB48_9GOBI)

HSP 1 Score: 250 bits (639), Expect = 1.810e-83
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 1 
Query:   52 HTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 465
            H MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:    3 HKMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 140
[Close]
BLAST of mRNA_H-paniculata_contig2370.6406.1 vs. uniprot
Match: A0A164UB18_9CRUS (Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A164UB18_9CRUS)

HSP 1 Score: 251 bits (640), Expect = 2.040e-83
Identity = 134/140 (95.71%), Postives = 137/140 (97.86%), Query Frame = 1 
Query:   46 LFHTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 465
            L  TMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ SAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER+
Sbjct:   15 LTKTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2370.6406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1P6C6_HETAK4.080e-8597.14Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
W4GZ05_9STRA1.360e-84100.00Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A2M4CJ97_ANODA4.100e-8494.41Histone H3 (Fragment) n=2 Tax=Neoptera TaxID=33340... [more]
A0A7S1BJN3_9STRA6.230e-8499.26Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
A0A4W5P680_9TELE8.980e-8495.68Histone H3 n=4 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
D2I0A9_AILME9.610e-8494.37Histone H3 (Fragment) n=2 Tax=Carnivora TaxID=3355... [more]
UPI001E6778CD1.000e-8395.04histone H3-like n=1 Tax=Procambarus clarkii TaxID=... [more]
A0A0C9RWZ2_9HYME1.060e-8395.00Histone H3 (Fragment) n=3 Tax=Endopterygota TaxID=... [more]
A0A3B4AB48_9GOBI1.810e-8396.38Histone H3 n=2 Tax=Bilateria TaxID=33213 RepID=A0A... [more]
A0A164UB18_9CRUS2.040e-8395.71Histone H3.2 n=1 Tax=Daphnia magna TaxID=35525 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2370contigH-paniculata_contig2370:2388..2855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score257.3
Seed ortholog evalue4.6e-66
Seed eggNOG ortholog112098.XP_008614757.1
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categorymitochondrion
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
Ec32 ortholog descriptionHistone H3
Ec32 orthologEc-26_006380.1
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size470
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.9531937-CDS-H-paniculata_contig2370:2387..28551622929674.9531937-CDS-H-paniculata_contig2370:2387..2855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2370 2388..2855 +
1691480962.0197198-CDS-H-paniculata_contig2370:2387..28551691480962.0197198-CDS-H-paniculata_contig2370:2387..2855Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2370 2388..2855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2370.6406.1prot_H-paniculata_contig2370.6406.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2370 2388..2855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2370.6406.1

>prot_H-paniculata_contig2370.6406.1 ID=prot_H-paniculata_contig2370.6406.1|Name=mRNA_H-paniculata_contig2370.6406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=156bp
TCPYPALRRFQSKSPLFHTMARTKQTARKSTGGKAPRKQLATKAARKSAP
ATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT
DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRI
RGERS*
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mRNA from alignment at H-paniculata_contig2370:2388..2855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2370.6406.1 ID=mRNA_H-paniculata_contig2370.6406.1|Name=mRNA_H-paniculata_contig2370.6406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=468bp|location=Sequence derived from alignment at H-paniculata_contig2370:2388..2855+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTGTCCCTACCCAGCCCTCCGTCGGTTCCAATCTAAATCTCCTCTTTT
CCACACTATGGCCCGTACCAAGCAGACCGCACGTAAATCGACTGGAGGCA
AGGCCCCCCGCAAGCAGCTAGCCACCAAAGCCGCACGCAAGTCCGCGCCG
GCTACTGGTGGTGTGAAGAAGCCGCACCGCTACAGGCCTGGTACCGTGGC
CCTGCGTGAGATCCGGCGCTACCAAAAGTCGACTGAGCTGCTCATTCGCA
AGCTGCCGTTCCAGCGCCTTGTGCGCGAGATTGCACAAGACTTCAAGACC
GACCTCCGCTTTCAAGGTTCCGCTGTGCTTGCCCTACAGGAGGCGGCTGA
GGCTTACCTGGTGGGTCTGTTCGAAGACACGAACTTGTGCGCAATCCATG
CGAAGCGCGTGACCATTATGCCTAAGGACATCCAGCTGGCCCGGCGGATC
CGCGGCGAACGATCATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig2370:2388..2855+

>mRNA_H-paniculata_contig2370.6406.1 ID=mRNA_H-paniculata_contig2370.6406.1|Name=mRNA_H-paniculata_contig2370.6406.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at H-paniculata_contig2370:2388..2855+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTGTCCCTACCCAGCCCTCCGTCGGTTCCAATCTAAATCTCCTCTTTT
CCACACTATGGCCCGTACCAAGCAGACCGCACGTAAATCGACTGGAGGCA
AGGCCCCCCGCAAGCAGCTAGCCACCAAAGCCGCACGCAAGTCCGCGCCG
GCTACTGGTGGTGTGAAGAAGCCGCACCGCTACAGGCCTGGTACCGTGGC
CCTGCGTGAGATCCGGCGCTACCAAAAGTCGACTGAGCTGCTCATTCGCA
AGCTGCCGTTCCAGCGCCTTGTGCGCGAGATTGCACAAGACTTCAAGACC
GACCTCCGCTTTCAAGGTTCCGCTGTGCTTGCCCTACAGGAGGCGGCTGA
GGCTTACCTGGTGGGTCTGTTCGAAGACACGAACTTGTGCGCAATCCATG
CGAAGCGCGTGACCATTATGCCTAAGGACATCCAGCTGGCCCGGCGGATC
CGCGGCGAACGATCATAGACTTGTCCCTACCCAGCCCTCCGTCGGTTCCA
ATCTAAATCTCCTCTTTTCCACACTATGGCCCGTACCAAGCAGACCGCAC
GTAAATCGACTGGAGGCAAGGCCCCCCGCAAGCAGCTAGCCACCAAAGCC
GCACGCAAGTCCGCGCCGGCTACTGGTGGTGTGAAGAAGCCGCACCGCTA
CAGGCCTGGTACCGTGGCCCTGCGTGAGATCCGGCGCTACCAAAAGTCGA
CTGAGCTGCTCATTCGCAAGCTGCCGTTCCAGCGCCTTGTGCGCGAGATT
GCACAAGACTTCAAGACCGACCTCCGCTTTCAAGGTTCCGCTGTGCTTGC
CCTACAGGAGGCGGCTGAGGCTTACCTGGTGGGTCTGTTCGAAGACACGA
ACTTGTGCGCAATCCATGCGAAGCGCGTGACCATTATGCCTAAGGACATC
CAGCTGGCCCGGCGGATCCGCGGCGAACGATCATAG
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