mRNA_H-paniculata_contig237.6404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig237.6404.1
Unique NamemRNA_H-paniculata_contig237.6404.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig237.6404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig237contigH-paniculata_contig237:37512..38271 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size760
Cds size498
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig237.6404.1prot_H-paniculata_contig237.6404.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig237 37584..38081 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.4436626-UTR-H-paniculata_contig237:37511..375831622929674.4436626-UTR-H-paniculata_contig237:37511..37583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig237 37512..37583 +
1691480961.7653599-UTR-H-paniculata_contig237:37511..375831691480961.7653599-UTR-H-paniculata_contig237:37511..37583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig237 37512..37583 +
1622929674.4830785-UTR-H-paniculata_contig237:38081..382711622929674.4830785-UTR-H-paniculata_contig237:38081..38271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig237 38082..38271 +
1691480961.7894678-UTR-H-paniculata_contig237:38081..382711691480961.7894678-UTR-H-paniculata_contig237:38081..38271Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig237 38082..38271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.4669318-CDS-H-paniculata_contig237:37583..380811622929674.4669318-CDS-H-paniculata_contig237:37583..38081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig237 37584..38081 +
1691480961.7811108-CDS-H-paniculata_contig237:37583..380811691480961.7811108-CDS-H-paniculata_contig237:37583..38081Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig237 37584..38081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig237.6404.1

>prot_H-paniculata_contig237.6404.1 ID=prot_H-paniculata_contig237.6404.1|Name=mRNA_H-paniculata_contig237.6404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
MSHVDRMKNSENSNNTLIIVHCRLLHYGYITSRSAPQTLTIVQRVDPPMA
SPHPCSISRKEIERYSHPAMYCRLGVPARYIHPPGEKSYPTLAGCHNRNI
SMCSELHCAMQHNDHSPNISHQYTFRPYTPLPLSLCGFHTRKVLRSGRRA
HDIITHESTLQLLYL*
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mRNA from alignment at H-paniculata_contig237:37512..38271+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig237.6404.1 ID=mRNA_H-paniculata_contig237.6404.1|Name=mRNA_H-paniculata_contig237.6404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=760bp|location=Sequence derived from alignment at H-paniculata_contig237:37512..38271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCAACATTTTTTAGTTCAACCAAGCGAGACACACCCAACAGCACTGCG
TCGATACGTGAATATTCCCTGCATGAGTCATGTAGACAGAATGAAAAACA
GCGAAAACAGTAACAACACATTGATAATCGTACACTGCAGATTATTACAC
TACGGCTACATAACATCTCGAAGTGCGCCACAGACGCTTACTATTGTCCA
ACGAGTTGACCCGCCTATGGCCTCCCCCCACCCCTGCTCGATCTCCCGTA
AGGAGATAGAGCGATATAGTCATCCTGCTATGTATTGCCGGCTTGGCGTA
CCAGCGCGGTACATACACCCCCCCGGCGAAAAATCATATCCTACTCTTGC
CGGTTGCCATAATAGAAATATATCCATGTGCAGTGAACTACATTGTGCAA
TGCAGCACAACGACCACAGTCCCAACATATCTCACCAATACACATTCCGT
CCCTACACGCCGCTACCCTTGTCACTTTGCGGTTTTCACACAAGAAAGGT
GCTGAGGAGTGGGAGGAGGGCACATGACATCATCACACACGAATCTACGC
TACAATTGCTATACTTGTAATGCATCGGCCTCTCGTTGTGATAAGTCGGG
ACGACAAGACATCGATGTCAAATCACAAAAACGGTCCCTTGCGCTTGGTC
TTTTCGTCAGTTTCTCTTTTGCGTCTCTCGCGAGCTTTGCGCTCCATCTG
TACCTTGGCGAACTTTATCTCACGGTCAGTTTGCAGTCCTTCCCACACGG
CATACGCCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig237:37512..38271+

>mRNA_H-paniculata_contig237.6404.1 ID=mRNA_H-paniculata_contig237.6404.1|Name=mRNA_H-paniculata_contig237.6404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig237:37512..38271+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTCATGTAGACAGAATGAAAAACAGCGAAAACAGTAACAACACATT
GATAATCGTACACTGCAGATTATTACACTACGGCTACATAACATCTCGAA
GTGCGCCACAGACGCTTACTATTGTCCAACGAGTTGACCCGCCTATGGCC
TCCCCCCACCCCTGCTCGATCTCCCGTAAGGAGATAGAGCGATATAGTCA
TCCTGCTATGTATTGCCGGCTTGGCGTACCAGCGCGGTACATACACCCCC
CCGGCGAAAAATCATATCCTACTCTTGCCGGTTGCCATAATAGAAATATA
TCCATGTGCAGTGAACTACATTGTGCAATGCAGCACAACGACCACAGTCC
CAACATATCTCACCAATACACATTCCGTCCCTACACGCCGCTACCCTTGT
CACTTTGCGGTTTTCACACAAGAAAGGTGCTGAGGAGTGGGAGGAGGGCA
CATGACATCATCACACACGAATCTACGCTACAATTGCTATACTTGTAAAT
GAGTCATGTAGACAGAATGAAAAACAGCGAAAACAGTAACAACACATTGA
TAATCGTACACTGCAGATTATTACACTACGGCTACATAACATCTCGAAGT
GCGCCACAGACGCTTACTATTGTCCAACGAGTTGACCCGCCTATGGCCTC
CCCCCACCCCTGCTCGATCTCCCGTAAGGAGATAGAGCGATATAGTCATC
CTGCTATGTATTGCCGGCTTGGCGTACCAGCGCGGTACATACACCCCCCC
GGCGAAAAATCATATCCTACTCTTGCCGGTTGCCATAATAGAAATATATC
CATGTGCAGTGAACTACATTGTGCAATGCAGCACAACGACCACAGTCCCA
ACATATCTCACCAATACACATTCCGTCCCTACACGCCGCTACCCTTGTCA
CTTTGCGGTTTTCACACAAGAAAGGTGCTGAGGAGTGGGAGGAGGGCACA
TGACATCATCACACACGAATCTACGCTACAATTGCTATACTTGTAA
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