mRNA_H-paniculata_contig237.6405.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig237.6405.1
Unique NamemRNA_H-paniculata_contig237.6405.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig237.6405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig237contigH-paniculata_contig237:38218..43206 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size897
Cds size561
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig237.6405.1prot_H-paniculata_contig237.6405.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig237 38218..40901 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.3193483-CDS-H-paniculata_contig237:38217..384421622929674.3193483-CDS-H-paniculata_contig237:38217..38442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig237 38218..38442 -
1691480961.7108424-CDS-H-paniculata_contig237:38217..384421691480961.7108424-CDS-H-paniculata_contig237:38217..38442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig237 38218..38442 -
1622929674.3329377-CDS-H-paniculata_contig237:39409..394971622929674.3329377-CDS-H-paniculata_contig237:39409..39497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig237 39410..39497 -
1691480961.7219486-CDS-H-paniculata_contig237:39409..394971691480961.7219486-CDS-H-paniculata_contig237:39409..39497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig237 39410..39497 -
1622929674.3579633-CDS-H-paniculata_contig237:40284..403801622929674.3579633-CDS-H-paniculata_contig237:40284..40380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig237 40285..40380 -
1691480961.732169-CDS-H-paniculata_contig237:40284..403801691480961.732169-CDS-H-paniculata_contig237:40284..40380Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig237 40285..40380 -
1622929674.375315-CDS-H-paniculata_contig237:40749..409011622929674.375315-CDS-H-paniculata_contig237:40749..40901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig237 40750..40901 -
1691480961.7397249-CDS-H-paniculata_contig237:40749..409011691480961.7397249-CDS-H-paniculata_contig237:40749..40901Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig237 40750..40901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.388156-UTR-H-paniculata_contig237:42797..428911622929674.388156-UTR-H-paniculata_contig237:42797..42891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig237 42798..42891 -
1691480961.7488527-UTR-H-paniculata_contig237:42797..428911691480961.7488527-UTR-H-paniculata_contig237:42797..42891Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig237 42798..42891 -
1622929674.401164-UTR-H-paniculata_contig237:42966..432061622929674.401164-UTR-H-paniculata_contig237:42966..43206Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig237 42967..43206 -
1691480961.7565894-UTR-H-paniculata_contig237:42966..432061691480961.7565894-UTR-H-paniculata_contig237:42966..43206Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig237 42967..43206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig237.6405.1

>prot_H-paniculata_contig237.6405.1 ID=prot_H-paniculata_contig237.6405.1|Name=mRNA_H-paniculata_contig237.6405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MDNNITDANKRFRYSDDPKKMKTSPSPTGRAALLALGAIVMLQPAAAAKT
RRERGSTDHVGANNFWSKFIEAVERDAELPSSSSPTAKGIVHGISSMIDA
VSTFGIPPIAIKLFCVVLMVIPLVAQRMYSKKRLEQSRQLQILEALTLAE
HNAAEKLIFKLQLEAILEKKAYAVWEGLQTDREIKFA
back to top

mRNA from alignment at H-paniculata_contig237:38218..43206-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig237.6405.1 ID=mRNA_H-paniculata_contig237.6405.1|Name=mRNA_H-paniculata_contig237.6405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4989bp|location=Sequence derived from alignment at H-paniculata_contig237:38218..43206- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCAGGCAAATAGTTTAGAACCGCTGATAAAATAGTAATATAAATAATAC
ATCTCCGTCTAGAGCAGGATTTTGTTACTGTCGAATATAGGTGAAGAGGC
CCCCCACCCATCTCTCTCGCCAACCAAGGAGATAGATGCCATCAAATATC
AGCTCAACATCGTGCCGCCTGAACCCCCGGCGCGCGCGTACCTGAGATCT
GCTACTATACTACTAGCTGGACCCAGCTTTCTTTTTGAGGGCGTTTGCCA
GCAACGATATTCGCCAGGTTAGGAGCTGATCGCTGCAGGACAAACAGAAG
GAGGAAGTGCGAGAGCTGCAGGCTTTTCCAATCCAAGGAGAAGAAGAGCA
GGACAGAGTGGCCAAAGTCTTATCATTGAGGAGGCTGCAACTAGGGAGGA
TACGTGAAGGTGCGAAACGTTGCCCATCCAACAGTTATAGGTTCATCCAA
TCTTTCGAGTGGTGACGTGAGAACATCAGCGAGCAAAAGTTGCAGCTGAT
TCTTGTCTATTATCCAAAAAATATAGTAGTGTGGTGTGTAGCACGATGCC
ACAGCCTGAAGCTGTCAAGTTGCATCTTTTTCGGACGTTGACGTTTCTAC
TGGATATGTACTATCTGTGTTTCATGTCTGCACCATCATGGTGAGGCGTA
CCCTCCTTGGAGCGTACATGCATCGATAAAATGATTGAATCATTCTTCTG
GATTTTCAGGCTTCACTCGCAGCATTCTCTCTGTCGTTGCTTCTATGCCG
GATCTGAGCAAAAACACAAAGCATGCGCTCTCAGCAATACCCCATACATA
CGACAGTCCTAGTTCCTGCAAGTATTTTCTTGAGAGGAGATAACAATTGA
GTCATGTAATAGAAGAGCGACTTTGACAAGATCTGATCGAGAGTTTCTGC
AGATATATCGTTCTCCCGCATCAGCATCTCTGGGTTGTCGAGGAACTGAG
CAGGAAACCCCCACCCCCGGAATTTGTTGTGTGGTTTTTAATCATCTGCG
GTCTTTACTTCTTTCCAGATATCATTGAGGGTGAAGACAGCGATGATCCA
TCACAAAGCAAAGAACCCAAAACCCCAAAAAAATCTGCTGCGATGAAGTG
TCAACCCTGTGAATCTAGAGCGATGCACACTTCTCTTCTGTGAGCCTATT
TAGTATCATGTAGTTCCTGCTGTCGTGTTTCAGTTGCACGCAATCATTCA
CCCTTCCGCCACCAAAGACATCATCGGTGTGTGCCATATGCACATTTCAT
TTATTGTTATTATTGCTAACTCAAACTGGCTTTGGGAATCTTCAAAGGTA
AGCTTACAAAGCAAGAAAAATGAATTGCAGAGGAAGCAAGAAAAAAATCA
AACCTAATAATAACCACGTGTTGTACTCGAATACCAGATCTACAGCAAAA
CCTCTTCGGCAAAAAACTGTTGTCCCTCGCTTGTGCACATTTCATTGTGT
CTACATAAATACGGAGTCTGCGGCATCTTCACCGAACCTGACAATATTAC
AGGAAACCAAATGGTTGACGGATAGTAAGCACTTCAATAAGCGCGAATAA
GCGGATAACCTAATGCCTCCTTTGATGCGATCAACGCTACGCTCACCAAA
CCCTTATCCTCGCCCCCCTAGTCGTTGATGGTGTCTAGTTATATCACCCA
AAACACAACGAGGAGCAACGACGAGTGTTTAAGGCAGAAAAATATGGATC
CACACAAACGGGACTGTCAACAAAATAGAGGTAATGCAACCACTCTGAAA
ATCATAATCTCTTTTGGATAAAGTAGATACGGTAATTATGATAAACCGGT
TATTTGTATGCAAGTCTTGCGTCTTCTCATTATTCTATTTTTTAATGATG
TTCAGTATACCCACGCGATTCATACAGACCAAGTCACATTTTCATATTTA
CAGGACGGTCTCAAATTCTGACAGTCCTCTACAGAGCCCGACTGTACACT
CGAAATACCGGATAGTTGGGTGGGCTAGAAGCTGTAATAGCCAACACGCT
GAAGTAGCGCCGCGATCCTAGAGATAACATGGTATATGTTGGTGTTGGTG
CCTTAGATTTCATGTTTGTTGGAGTCAAGTCGGGAGCACCACCCAGTGTG
AGCCGCCAAGAAGCAAAAAACAATAGCTGTCTTGCGGTGCACAGTACAGA
AGCCAACTCTGCACCCGCCAGCAGCAGCATTGCGTGTCTCCATCCATGCC
CACCCACCCTGGTTTCGTCCAATTTACGTAATTGGGACTCCCTATTGCTA
TGTGTCGTTACCTGGTGTCGTTGTGACACTACTGCTTCTATCATCTACCC
GGCAGATGGACAATAATATAACCGACGCAAACAAGCGGTTTCGCTATTCC
GACGACCCGAAAAAAATGAAAACGTCGCCATCTCCGACAGGGAGAGCTGC
CCTGCTTGCTCTGGGCGCCATAGTGATGCTACAGCCTGCTGCTGCGGCGA
AGACCAGGTATCGAGTTTACGCACTTGAGTGTCGTGGATGTTGTGTTTGC
TGCATAGTCTGTGTTGGCGTGCCATGGTACTGTAGCAGTATACACTCACA
GTCGCGAATGATCAATAAACACACTCGCTGGGTGTATCCAAGAGATCCTT
TTTGACATACGATTACTGTGAAAACCATTAATTGACAGCGTCTGGCACAT
ACGCGGCGCATCTAGAGCAGACAGGTTCAAAGATGCAATATTTGTACTTT
CACCTGCGCAGGGGAACCCTATGCTGTTGCTTGTGAGTTGACCCATCAGC
CTGACAAAAATCTTTGTCGTGATGCACTTACCCTACCGTGGACTTCCCTC
TGTATCCACCCCGACACCAACATCAGGAGGGAGCGCGGATCCACCGATCA
TGTTGGTGCCAACAACTTTTGGAGCAAGTTCATCGAGGCAGTTGAGCGAG
ACGCGGAGTTGCCGAGTAGTAGGTGAGCTGAGGACACAGCGCACTGTGGG
AGTGGCCAATGTTTCTGATGTATTGTTGTGCTGCGCAGGGCTGTGTAATT
TGTGGCAGTTGTACCAGGGATATACGCTTCTGTCTCTTGGCATAATTGGT
TTTCTCGTCGGTACCATAAGATAAACTGCAGGTGGAACTTGGTGAGAGTA
CGAGGAAGACCTCAATCATAATGTTGTTTTTTAGGCGGTTCGTGTTGAGA
ATCAAATTCGCATCGACAGCAACTGCAGTAAATTATGTGCAACTGCAGGA
CCGGGTCGGTTCGGAACTTTCAAGCAGCAAGATTAGTATGCTTGCAGGGG
GAAACAGGTCCAGCCTCGAATCGACGACGCTTGAAGTATCGCCTCTCTGA
CAGTTTTGTCCAGGGTTGATGTGCATTCGGTCGGAAGGTCGTCTGAAATC
AGAGGCTTCGACCTTTGCTAGCTGTGTACCAATGTTTGAGGAGCAAGCAC
GTCTTTGGAATTGTGTATTTCTATAGTTCTTGTGTTACACAATCTTCCTT
TGCGTGCTTTGCGCTCCTGCGCTCACCTATTTCTTGATCGCATATGTTCG
AAATGTCGGATAACACTTCCTTGTTTTTCTCGCCTCACTGCTACAAGTTG
AAATTATCGATCACAGGTAATTGAAATCGCCAGCAGAAGCTTTCAGATAC
AACCACATTCTCTTTTAACAGTTTTTGTTCTCCGTCATGTTTGTTCTTAT
TTCGCTGCCCATCCCATCTCTCTCTCGTTCTCTCTCTACATTTGTATTTT
CAAATCCAGCTCTCCCACTGCAAAGGGCATCGTACATGGCATATCATCTA
TGATAGATGCAGTTAGCACCTTCGGCATACCACCAATCGCTATCAAGGTA
CGATACAGCCATGTTTGTTTTCATGCAGCGAAGGTCATCCCCTGTAATTG
AGTTTCAAAATAGCGATCCACCTGGATATATTGGAGAGGCCATGATTTTT
TTCATTGGGCAGGCACATGCCGGTGCCGGACCGGCATCAATCATGAAGAG
GCGTGGTTTGTACTTGTCTGTGTTGCCCACCTATAGGCAGTGAACACATG
AATACAGTGCAGCGAGTTGCTCACTTCTGCACACATTGTTGATTGCCAGC
TCCAAATCCATTGCCTTTCATATACACGTTGTCTTCGTCCCTGTTTTCTT
CTGTCACTCCCCGGGATCCAAGAAGATGGCGTCATGGCCATGAATAACGT
TACTCGTCAACCGAGCGAATTTTCTGGACCAATCAGTGGCTCTTTGCAAC
AATGTTGACCAGTAGGAAAACTGCGGGCACCATTTTCCTGTCTATTCCCA
GTTGTGCCACCAGGCACTCATTGGCTTGTTAAGTTTTGCAAATCAACGGA
ATTACTTTTAGTCTGTGATTGTGAAATTCACGGGTAAATTTCAAGCCTTG
TGACGGCCGACGTCGTTTCGCCGATTCATATAGGTTACCGAATATGAAAC
GCTTCATATCCGGGGCGAGGTGTGCTGAAATTGATGAGCTGCGAAGGAAT
CCAACACGCCGTGTGTCGTGTTTTTAGTCTAGCTTGGCAGGTACTTACTC
TTCACCCTGAGTTCAACGCCGCCTGTTGTGTTTCTATATCTCACTTTTCA
GTTACGTAGCATACGAGACATCGACCATGGGTCATTTGGTGCGCTCGATG
ATGAAGACTCCTGGACCGAACACGCTCCGAAATACCCATATAAATAGAAT
ACATAGATACACATGTTATTTGCCAAGGTGTGGTAATGATTTCTCGATAT
AGTGTCGTTGAACTCAAACCCCGTTGTTGTCTCTCTGCTGCGATACCTCT
GTGATCCCGCGCAGTTGTTCTGTGTCGTTCTAATGGTTATTCCGTTGGTT
GCTCAAAGGATGTACTCCAAAAAACGGCTCGAGCAGTCTAGGCAGCTACA
AATTCTGGAAGCATTGACTCTGGCAGAGCACAATGCAGCCGAGAAGTTGA
TCTTCAAGCTCCAACTAGAGGCCATTCTAGAGAAAAAGGCGTATGCCGTG
TGGGAAGGACTGCAAACTGACCGTGAGATAAAGTTCGCC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig237:38218..43206-

>mRNA_H-paniculata_contig237.6405.1 ID=mRNA_H-paniculata_contig237.6405.1|Name=mRNA_H-paniculata_contig237.6405.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig237:38218..43206- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAATAATATAACCGACGCAAACAAGCGGTTTCGCTATTCCGACGA
CCCGAAAAAAATGAAAACGTCGCCATCTCCGACAGGGAGAGCTGCCCTGC
TTGCTCTGGGCGCCATAGTGATGCTACAGCCTGCTGCTGCGGCGAAGACC
AGATGGACAATAATATAACCGACGCAAACAAGCGGTTTCGCTATTCCGAC
GACCCGAAAAAAATGAAAACGTCGCCATCTCCGACAGGGAGAGCTGCCCT
GCTTGCTCTGGGCGCCATAGTGATGCTACAGCCTGCTGCTGCGGCGAAGA
CCAGGAGGGAGCGCGGATCCACCGATCATGTTGGTGCCAACAACTTTTGG
AGCAAGTTCATCGAGGCAGTTGAGCGAGACGCGGAGTTGCCGAGTAGTAG
GAGGGAGCGCGGATCCACCGATCATGTTGGTGCCAACAACTTTTGGAGCA
AGTTCATCGAGGCAGTTGAGCGAGACGCGGAGTTGCCGAGTAGTAGCTCT
CCCACTGCAAAGGGCATCGTACATGGCATATCATCTATGATAGATGCAGT
TAGCACCTTCGGCATACCACCAATCGCTATCAAGCTCTCCCACTGCAAAG
GGCATCGTACATGGCATATCATCTATGATAGATGCAGTTAGCACCTTCGG
CATACCACCAATCGCTATCAAGTTGTTCTGTGTCGTTCTAATGGTTATTC
CGTTGGTTGCTCAAAGGATGTACTCCAAAAAACGGCTCGAGCAGTCTAGG
CAGCTACAAATTCTGGAAGCATTGACTCTGGCAGAGCACAATGCAGCCGA
GAAGTTGATCTTCAAGCTCCAACTAGAGGCCATTCTAGAGAAAAAGGCGT
ATGCCGTGTGGGAAGGACTGCAAACTGACCGTGAGATAAAGTTCGCCTTG
TTCTGTGTCGTTCTAATGGTTATTCCGTTGGTTGCTCAAAGGATGTACTC
CAAAAAACGGCTCGAGCAGTCTAGGCAGCTACAAATTCTGGAAGCATTGA
CTCTGGCAGAGCACAATGCAGCCGAGAAGTTGATCTTCAAGCTCCAACTA
GAGGCCATTCTAGAGAAAAAGGCGTATGCCGTGTGGGAAGGACTGCAAAC
TGACCGTGAGATAAAGTTCGCC
back to top