mRNA_H-paniculata_contig23696.6401.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23696.6401.1
Unique NamemRNA_H-paniculata_contig23696.6401.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23696.6401.1 vs. uniprot
Match: D8LHX5_ECTSI (Predicted hydrolases or acyltransferases (Alpha/beta hydrolase superfamily) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX5_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 2.540e-46
Identity = 76/91 (83.52%), Postives = 84/91 (92.31%), Query Frame = 1
Query:    1 QPALVLIHGFGASVYHWRYNIPALVQAGYRVLALDMLGFGLSDKPILEYSAETWRDQVCAFIKEVAGGKAIVAGNSLGGFVALAAAAHTPD 273
            +PALVLIHGFGASVYHWRYNIPALV+ GYRVLALD+LGFGLSDKPI+EYSAETWRDQVCAF+ EV G  A+VAGNSLGGF ALAAA+H P+
Sbjct:  161 KPALVLIHGFGASVYHWRYNIPALVKQGYRVLALDLLGFGLSDKPIIEYSAETWRDQVCAFVTEVVGADAVVAGNSLGGFTALAAASHAPN 251          
BLAST of mRNA_H-paniculata_contig23696.6401.1 vs. uniprot
Match: A0A7S0HKG1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HKG1_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 1.830e-31
Identity = 58/99 (58.59%), Postives = 73/99 (73.74%), Query Frame = 1
Query:    1 QPALVLIHGFGASVYHWRYNIPALVQAGYRVLALDMLGFGLSDKPILEYSAETWRDQVCAFIKEVAG--------GKAIVAGNSLGGFVALAAAAHTPD 273
            QP L LIHGFGAS +HWR N+PAL  AGYRV A+D++GFGLS KPI++Y +  WRDQ  AF++EVAG         +A+VAGNS+GG+ ALA AA  P+
Sbjct:    7 QPFL-LIHGFGASGFHWRRNVPALAAAGYRVYAIDLVGFGLSSKPIIDYDSRLWRDQCAAFLREVAGCGEAAANGRRAVVAGNSIGGYCALAVAAEYPE 104          
BLAST of mRNA_H-paniculata_contig23696.6401.1 vs. uniprot
Match: A0A6U1NRJ5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NRJ5_9STRA)

HSP 1 Score: 119 bits (297), Expect = 6.530e-30
Identity = 62/101 (61.39%), Postives = 73/101 (72.28%), Query Frame = 1
Query:    4 PALVLIHGFGASVYHWRYNIPALVQAGYRVLALDMLGFGLSDKPILEYSAETWRDQVCAFIKEVAG-----------GKAIVAGNSLGGFVALAAAAHTPD 273
            P LVLIHGFGAS +HWRYNIP L Q  YRV A+D+LGFGLSDKPIL+Y+ E WRDQ+ AFI+EV G            +A+VAGNSLGG+ ALA +A  P 
Sbjct:  135 PPLVLIHGFGASHFHWRYNIPELSQK-YRVYAVDLLGFGLSDKPILDYTGELWRDQIAAFIREVVGVGMSEEGEGGVERAVVAGNSLGGYTALATSAVYPS 234          
BLAST of mRNA_H-paniculata_contig23696.6401.1 vs. uniprot
Match: A0A150G4Y1_GONPE (AB hydrolase-1 domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G4Y1_GONPE)

HSP 1 Score: 117 bits (294), Expect = 6.630e-30
Identity = 59/96 (61.46%), Postives = 73/96 (76.04%), Query Frame = 1
Query:    1 QPALVLIHGFGASVYHWRYNIPALVQAGYRVLALDMLGFGLSDKPILEYS-AETWRDQVCAFIKEVAG---GKAIVAGNSLGGFVALAAAA-HTPD 273
             P +VL+HG+GAS YHWRYN+PALV AGY+V A+D+LGFG S+K   +YS  E W +QV AFI+EV G   G  ++AGNSLGG+VALA AA H PD
Sbjct:   52 DPVVVLVHGYGASSYHWRYNVPALVDAGYQVFAVDLLGFGYSEKARTDYSNGEVWSEQVAAFIREVVGPSAGPVVLAGNSLGGYVALATAATHGPD 147          
BLAST of mRNA_H-paniculata_contig23696.6401.1 vs. uniprot
Match: A0A7C8ZJ87_OPUST (AB hydrolase-1 domain-containing protein (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8ZJ87_OPUST)

HSP 1 Score: 116 bits (290), Expect = 8.730e-30
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    4 PALVLIHGFGASVYHWRYNIPALVQAGYRVLALDMLGFGLSDKPILEYSAETWRDQVCAFIKEVAGGKAIVAGNSLGGFVALAAAAHTPD 273
            P +VLIHGFGAS +HWRYNIP L +  Y+V ALD+LGFG S+K I+EY A  WRDQV  F+KE+    A+V GNSLGGF ALAAAA  P+
Sbjct:  100 PPIVLIHGFGASAFHWRYNIPELSKR-YKVYALDLLGFGWSEKAIIEYDAMVWRDQVVDFLKEIVKEPAVVVGNSLGGFTALAAAASLPE 188          
BLAST of mRNA_H-paniculata_contig23696.6401.1 vs. uniprot
Match: A0A6J1J7Q7_CUCMA (pheophytinase, chloroplastic-like n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1J7Q7_CUCMA)

HSP 1 Score: 115 bits (288), Expect = 6.650e-29
Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    4 PALVLIHGFGASVYHWRYNIPALVQAGYRVLALDMLGFGLSDKPILEYSAETWRDQVCAFIKEVAGGKAIVAGNSLGGFVALAAAAHTPD 273
            P +VLIHGFGASV+HWRYNIP L +  Y+V ALD+LGFG SDK I+EY A  WRDQV  F+KE+    A++ GNSLGGF AL +AA  P+
Sbjct:   99 PPIVLIHGFGASVFHWRYNIPELAKK-YKVYALDLLGFGWSDKAIIEYDAMVWRDQVVDFMKEIVKQPAVLVGNSLGGFTALVSAAGLPE 187          
BLAST of mRNA_H-paniculata_contig23696.6401.1 vs. uniprot
Match: A0A0A0KWQ9_CUCSA (AB hydrolase-1 domain-containing protein n=8 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0KWQ9_CUCSA)

HSP 1 Score: 114 bits (285), Expect = 1.850e-28
Identity = 56/90 (62.22%), Postives = 67/90 (74.44%), Query Frame = 1
Query:    4 PALVLIHGFGASVYHWRYNIPALVQAGYRVLALDMLGFGLSDKPILEYSAETWRDQVCAFIKEVAGGKAIVAGNSLGGFVALAAAAHTPD 273
            P +VLIHGFGASV+HWRYNIP L +  Y+V ALD+LGFG SDK ++EY A  WRDQV  F KEV    A++ GNSLGGF AL +AA  P+
Sbjct:  101 PPIVLIHGFGASVFHWRYNIPELAKK-YKVYALDLLGFGWSDKALIEYDAMVWRDQVVDFTKEVVKQPAVLVGNSLGGFTALVSAAGLPE 189          
BLAST of mRNA_H-paniculata_contig23696.6401.1 vs. uniprot
Match: A0A6J1C5T8_MOMCH (pheophytinase, chloroplastic isoform X1 n=2 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1C5T8_MOMCH)

HSP 1 Score: 114 bits (285), Expect = 1.870e-28
Identity = 55/90 (61.11%), Postives = 68/90 (75.56%), Query Frame = 1
Query:    4 PALVLIHGFGASVYHWRYNIPALVQAGYRVLALDMLGFGLSDKPILEYSAETWRDQVCAFIKEVAGGKAIVAGNSLGGFVALAAAAHTPD 273
            PA+VLIHGFGASV+HWRYNIP L +  ++V ALD+LGFG SDK I+EY A  WRDQV  F+KE+    A++ GNSLGGF AL +A   P+
Sbjct:   99 PAIVLIHGFGASVFHWRYNIPELAKT-HKVYALDLLGFGWSDKAIIEYDAMVWRDQVVDFMKEIVKQPAVLVGNSLGGFTALVSAVGLPE 187          
BLAST of mRNA_H-paniculata_contig23696.6401.1 vs. uniprot
Match: R1DU74_EMIHU (AB hydrolase-1 domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DU74_EMIHU)

HSP 1 Score: 113 bits (283), Expect = 2.310e-28
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 1
Query:    1 QPALVLIHGFGASVYHWRYNIPALVQAGYRVLALDMLGFGLSDKPILEYSAETWRDQVCAFIKEVAG-----GKAIVAGNSLGGFVALAAAAHTPD 273
            QP L LIHGFGAS +HWR N+  L  AGYRV A+D++GFGLS KP+++Y +  WRDQ  AF++EVAG      KAIVAGNS+GG+ ALA  A  PD
Sbjct:   45 QPFL-LIHGFGASGFHWRRNVNVLAGAGYRVYAIDLVGFGLSSKPVIDYDSRIWRDQCAAFLREVAGCGAGGRKAIVAGNSIGGYTALALGAEYPD 139          
BLAST of mRNA_H-paniculata_contig23696.6401.1 vs. uniprot
Match: A0A7S3NQ12_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ12_9STRA)

HSP 1 Score: 113 bits (283), Expect = 2.670e-28
Identity = 51/91 (56.04%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 QPALVLIHGFGASVYHWRYNIPALVQAGYRVLALDMLGFGLSDKPILEYSAETWRDQVCAFIKEVAGGKAIVAGNSLGGFVALAAAAHTPD 273
            +  +VL+HGFGA+ YHWRYN+  LV  GY V  LD+LGFGLS+KP++ YS +TW +Q+  F++E+    A++AGNSLGGFVALA AA  P+
Sbjct:   69 EKPIVLVHGFGANYYHWRYNVFPLVDQGYTVYCLDLLGFGLSEKPVIPYSPDTWSNQLGNFLREIVKQPAVLAGNSLGGFVALATAADYPN 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23696.6401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHX5_ECTSI2.540e-4683.52Predicted hydrolases or acyltransferases (Alpha/be... [more]
A0A7S0HKG1_9EUKA1.830e-3158.59Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A6U1NRJ5_9STRA6.530e-3061.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A150G4Y1_GONPE6.630e-3061.46AB hydrolase-1 domain-containing protein n=1 Tax=G... [more]
A0A7C8ZJ87_OPUST8.730e-3063.33AB hydrolase-1 domain-containing protein (Fragment... [more]
A0A6J1J7Q7_CUCMA6.650e-2962.22pheophytinase, chloroplastic-like n=3 Tax=Cucurbit... [more]
A0A0A0KWQ9_CUCSA1.850e-2862.22AB hydrolase-1 domain-containing protein n=8 Tax=C... [more]
A0A6J1C5T8_MOMCH1.870e-2861.11pheophytinase, chloroplastic isoform X1 n=2 Tax=Mo... [more]
R1DU74_EMIHU2.310e-2859.38AB hydrolase-1 domain-containing protein n=2 Tax=E... [more]
A0A7S3NQ12_9STRA2.670e-2856.04Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23696contigH-paniculata_contig23696:2657..3207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue4e-38
Seed eggNOG ortholog2880.D8LHX5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of endocannabinoid signaling pathway
EggNOG OGsCOG0596@1,KOG1454@2759
Ec32 ortholog descriptionEpoxide hydrolase-like
Ec32 orthologEc-18_000850.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size273
Cds size273
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.2422304-CDS-H-paniculata_contig23696:2656..27581622929674.2422304-CDS-H-paniculata_contig23696:2656..2758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23696 2657..2758 -
1691480961.6829462-CDS-H-paniculata_contig23696:2656..27581691480961.6829462-CDS-H-paniculata_contig23696:2656..2758Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23696 2657..2758 -
1622929674.2692711-CDS-H-paniculata_contig23696:3036..32071622929674.2692711-CDS-H-paniculata_contig23696:3036..3207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23696 3037..3207 -
1691480961.6969566-CDS-H-paniculata_contig23696:3036..32071691480961.6969566-CDS-H-paniculata_contig23696:3036..3207Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23696 3037..3207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23696.6401.1prot_H-paniculata_contig23696.6401.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23696 2657..3207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23696.6401.1

>prot_H-paniculata_contig23696.6401.1 ID=prot_H-paniculata_contig23696.6401.1|Name=mRNA_H-paniculata_contig23696.6401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
QPALVLIHGFGASVYHWRYNIPALVQAGYRVLALDMLGFGLSDKPILEYS
AETWRDQVCAFIKEVAGGKAIVAGNSLGGFVALAAAAHTPD
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mRNA from alignment at H-paniculata_contig23696:2657..3207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23696.6401.1 ID=mRNA_H-paniculata_contig23696.6401.1|Name=mRNA_H-paniculata_contig23696.6401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=551bp|location=Sequence derived from alignment at H-paniculata_contig23696:2657..3207- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCGGCGCTGGTGCTGATCCACGGGTTCGGAGCCAGCGTGTATCACTG GCGGTACAACATCCCGGCCTTGGTTCAAGCTGGCTACCGAGTCCTGGCGC TGGATATGCTTGGCTTCGGGTTGAGCGATAAACCTATATTGGAGTATTCG GCGGAGACTTGGCGAGACCAGGTTTGTTTGCCAATGGTTCTTATTGTCAT GATCCGTTGTTGTTGTCGTTTTCTAAGTTTTCCATATTTACAACCATTGC TTTTCTGTTGGCTGCTGCTACGGCTGCTGTTGCTGCTGCTGTTGCTGCTG CTGTTGCTCTGGCACTTCTAATTTACTTCGTTGTTTCCTGTTTTATACCT CGCTGGGCCCTCTCTTTGTTCACTATTTTGTTTGATTCTGTGTCGACTCC ATCTACCTGCTGCTACCTATCGCTGTTTGTTTTTGACCGACTGTTTCAGG TTTGTGCCTTCATAAAGGAAGTAGCGGGCGGGAAGGCCATCGTGGCAGGC AACTCCCTGGGAGGTTTCGTTGCTTTGGCAGCAGCGGCGCACACCCCGGA C
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Coding sequence (CDS) from alignment at H-paniculata_contig23696:2657..3207-

>mRNA_H-paniculata_contig23696.6401.1 ID=mRNA_H-paniculata_contig23696.6401.1|Name=mRNA_H-paniculata_contig23696.6401.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig23696:2657..3207- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGCCGGCGCTGGTGCTGATCCACGGGTTCGGAGCCAGCGTGTATCACTG
GCGGTACAACATCCCGGCCTTGGTTCAAGCTGGCTACCGAGTCCTGGCGC
TGGATATGCTTGGCTTCGGGTTGAGCGATAAACCTATATTGGAGTATTCG
GCGGAGACTTGGCGAGACCAGCAGCCGGCGCTGGTGCTGATCCACGGGTT
CGGAGCCAGCGTGTATCACTGGCGGTACAACATCCCGGCCTTGGTTCAAG
CTGGCTACCGAGTCCTGGCGCTGGATATGCTTGGCTTCGGGTTGAGCGAT
AAACCTATATTGGAGTATTCGGCGGAGACTTGGCGAGACCAGGTTTGTGC
CTTCATAAAGGAAGTAGCGGGCGGGAAGGCCATCGTGGCAGGCAACTCCC
TGGGAGGTTTCGTTGCTTTGGCAGCAGCGGCGCACACCCCGGACGTTTGT
GCCTTCATAAAGGAAGTAGCGGGCGGGAAGGCCATCGTGGCAGGCAACTC
CCTGGGAGGTTTCGTTGCTTTGGCAGCAGCGGCGCACACCCCGGAC
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