mRNA_H-paniculata_contig23695.6400.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23695.6400.1
Unique NamemRNA_H-paniculata_contig23695.6400.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23695.6400.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 1.920e-58
Identity = 104/292 (35.62%), Postives = 169/292 (57.88%), Query Frame = 1
Query:   19 MNKFIITDLGEISLILGMEVLHNKQTSTLQLPQHKYVLSILDRFNILSANPTKTPGIKTDPSAASNSDSLLDAAATKKYQAMEGSLIFLTQCTRFDICFSVIQAARFMSAPTQQHLVTEKRILRYLRGYPDIPITYSRSKLELVGYSDASYCT-----RSTTGTMFF-ANGLVYFSSRLEKITATSTTEVELIALAACAKQGIYLLGICRELALE-INSCQVRSENRGVLYLAKNSNYSSRSKHLAIRFAALCDWTRSKQLIVDHVLSSEQLADILTKHCERVTFARLCSKI 873
            M+ F +TD+GE+  ++G+EV  + +  TL + Q  Y   IL R+ +  ANP  TPG   + S     D LL     +++Q + GSL++L QCTR+D+ ++V Q  R  + P Q H+   K +LRYLRG PD+PI Y + +  L  ++D+S+       RSTTG +FF   GL+ + ++ + + A +T E EL AL+  A++ +Y+     E+  +   S  + S++ G L +A N+ +SSR+KH+A+RF  L + T+  ++ + H  S+  LADI TKH  +  FA +   I
Sbjct:    1 MDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEEKQRFQTITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292          
BLAST of mRNA_H-paniculata_contig23695.6400.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 2.650e-57
Identity = 116/303 (38.28%), Postives = 176/303 (58.09%), Query Frame = 1
Query:    1 DYRNQLMNKFIITDLGEISLILGMEVLHNKQTSTLQLPQHKYVLSILDRFNILSANPTKTPGIKTDPSAASNSDSLLDAAATKKYQAMEGSLIFLTQCTRFDICFSVIQAARFMSAPTQQHLVTEKRILRYLRGYPDIPITYSRSKLELVGYSDASYC-------TRSTTGTMFF-ANGLVYFSSRLEKITATSTTEVELIALAACAKQGIYLLGICRELALEINSCQVRSENRGVLYLAKNSNYSSRSKHLAIRFAALCDWTRSKQLIVDHVLSSEQLADILTKHCERVTFARLCSKISIFG 885
            D + QL +KF +TD G   L+LGME+  ++    + + QHKYV++ILD++ ++   P  TPG   +      +   L     K YQ + GSL+FLT  TR++I ++V+   R M+ PT QH+V  KR+LRYLRG PD+P+ + R + +L  Y DAS+         RS+TG +F  A G+V  +S L+K+TA S+   E+IA+A  A++ IYL G+  EL     +  + S++ G +  A NS +  RSK ++ R+  L        +++  V S EQLADILTKH ERV F +L + +   G
Sbjct:  403 DLKKQLSDKFKMTDGGPAELLLGMEI--SQSDGEIIVSQHKYVMNILDKYQMVDCKPAATPGSGPEIEQEPENAIYLSEEDKKLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 703          
BLAST of mRNA_H-paniculata_contig23695.6400.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 1.010e-56
Identity = 107/296 (36.15%), Postives = 173/296 (58.45%), Query Frame = 1
Query:    7 RNQLMNKFIITDLGEISLILGMEVLHNKQTSTLQLPQHKYVLSILDRFNILSANPTKTPGIKTDPSAASNSDSLLDAAATKKYQAMEGSLIFLTQCTRFDICFSVIQAARFMSAPTQQHLVTEKRILRYLRGYPDIPITYSRSKLELVGYSDASYCT-----RSTTGTMFF-ANGLVYFSSRLEKITATSTTEVELIALAACAKQGIYLLGICRELALE-INSCQVRSENRGVLYLAKNSNYSSRSKHLAIRFAALCDWTRSKQLIVDHVLSSEQLADILTKHCERVTFARLCSKI 873
            + +LM+ F +TD+GE+  ++G+EV  + +  TL + Q  Y   IL R+ +  ANP  TPG   + S     D LL     +++QA+ GSL++L QCTR+D+ ++V Q  R  + P Q H+   K +LRYLRG PD+PI Y + K  L  ++D+S+       RSTTG +FF   GL+ + ++ + + A +T E EL AL+  A++ +Y+     E+  +   S  + S++ G L +A N+ +SSR+KH+A+RF  L + T+  ++ + H  S+  LADI TKH  +  FA +   I
Sbjct:  434 KKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729          
BLAST of mRNA_H-paniculata_contig23695.6400.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 3.430e-56
Identity = 107/300 (35.67%), Postives = 176/300 (58.67%), Query Frame = 1
Query:    7 RNQLMNKFIITDLGEISLILGMEVLHNKQTSTLQLPQHKYVLSILDRFNILSANPTKTPGIKTDPSAASNSDSLLDAAATKKYQAMEGSLIFLTQCTRFDICFSVIQAARFMSAPTQQHLVTEKRILRYLRGYPDIPITYSRSKLELVGYSDASYCT-----RSTTGTMFF-ANGLVYFSSRLEKITATSTTEVELIALAACAKQGIYLLGICRELALE-INSCQVRSENRGVLYLAKNSNYSSRSKHLAIRFAALCDWTRSKQLIVDHVLSSEQLADILTKHCERVTFARLCSKISIFG 885
            + +L ++F +TD+GE+  ILG++V  + +  TL + Q  YV ++L+RF +  ANP  TPG   + S     D +L     K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++   K +LRYLRG P +PI Y R +  L  ++D+S+       RSTTG +FF A GL+ + ++ + +TA ST E E+ AL+  A++ +Y+     EL  +   S  + S++ G L +A N+ +S R+KH+A+R+  + +     Q+ + H  S  QLADI TK+  +  FA +  +I  F 
Sbjct:  401 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 700          
BLAST of mRNA_H-paniculata_contig23695.6400.1 vs. uniprot
Match: A0A6H5K4S5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S5_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 2.600e-55
Identity = 107/317 (33.75%), Postives = 176/317 (55.52%), Query Frame = 1
Query:    7 RNQLMNKFIITDLGEISLILGMEVLHNKQTSTLQLPQHKYVLSILDRFNILSANPTKTPGIKTDPSAASNSDSLLDAAATKKYQAMEGSLIFLTQCTRFDICFSVIQAARFMSAPTQQHLVTEKRILRYLRGYPD-----------------IPITYSRSKLELVGYSDASYCT-----RSTTGTMFF-ANGLVYFSSRLEKITATSTTEVELIALAACAKQGIYLLGICRELALE-INSCQVRSENRGVLYLAKNSNYSSRSKHLAIRFAALCDWTRSKQLIVDHVLSSEQLADILTKHCERVTFARLCSKISIFG 885
            + +L ++F +TD+GE+  ILG++V  + +  TL + Q  YV ++L+RF +  ANP  TPG   + S     D +L     K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++   K +LRYLRG P                  +PI Y R +  L  ++D+S+       RSTTG +FF A GL+ + ++ + +TA ST E E+ AL+  A++ +Y+     EL  +   S  + S++ G L +A N+ +S R+KH+A+R+  + +     Q+ + H  S  QLADI TK+  +  FA +  +I  F 
Sbjct:   16 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVXXXXXXXXXXXXXXXSVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 332          
BLAST of mRNA_H-paniculata_contig23695.6400.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 5.290e-55
Identity = 105/300 (35.00%), Postives = 173/300 (57.67%), Query Frame = 1
Query:    7 RNQLMNKFIITDLGEISLILGMEVLHNKQTSTLQLPQHKYVLSILDRFNILSANPTKTPGIKTDPSAASNSDSLLDAAATKKYQAMEGSLIFLTQCTRFDICFSVIQAARFMSAPTQQHLVTEKRILRYLRGYPDIPITYSRSKLELVGYSDASYCT-----RSTTGTMFF-ANGLVYFSSRLEKITATSTTEVELIALAACAKQGIYLLGICRELALE-INSCQVRSENRGVLYLAKNSNYSSRSKHLAIRFAALCDWTRSKQLIVDHVLSSEQLADILTKHCERVTFARLCSKISIFG 885
            + +L ++F +TD+GE+  ILG+ V  + +  TL + Q  YV ++L+RF +  ANP  TPG   + S     D +L     K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++   K +LRYLRG P +PI Y R +  L  ++D+S+       RSTTG +FF A GL+ + ++ + +TA ST E E+ AL+  A++ +Y+     EL  +   S  + S++ G L +A N+ +S R+ ++A+R   + +     Q+ + H  S  QLADI TK+  +  FA +  +I  F 
Sbjct:   74 KKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRT-NVALRCFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 372          
BLAST of mRNA_H-paniculata_contig23695.6400.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 5.630e-55
Identity = 105/300 (35.00%), Postives = 174/300 (58.00%), Query Frame = 1
Query:    7 RNQLMNKFIITDLGEISLILGMEVLHNKQTSTLQLPQHKYVLSILDRFNILSANPTKTPGIKTDPSAASNSDSLLDAAATKKYQAMEGSLIFLTQCTRFDICFSVIQAARFMSAPTQQHLVTEKRILRYLRGYPDIPITYSRSKLELVGYSDASYCT-----RSTTGTMFF-ANGLVYFSSRLEKITATSTTEVELIALAACAKQGIYLLGICRELALE-INSCQVRSENRGVLYLAKNSNYSSRSKHLAIRFAALCDWTRSKQLIVDHVLSSEQLADILTKHCERVTFARLCSKISIFG 885
            + +L ++F +TD+GE+  ILG++V  + +  TL + Q  YV + L+RF +  ANP  T G   + S     D +L     K YQ+M GS+++L QCT+FD+ ++ +Q ++  S P Q ++   K +LRYLRG P +PI Y R +  L  ++D+S+       RSTTG +FF A GL+ + ++ + +TA ST E E+ AL+  A++ +Y+     EL  +   S  + S++ G L +A N+ +S R+KH+A+R+  + +     Q+ + H  S  QLADI TK+  +  FA +  +I  F 
Sbjct:  193 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 492          
BLAST of mRNA_H-paniculata_contig23695.6400.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 6.320e-55
Identity = 106/300 (35.33%), Postives = 175/300 (58.33%), Query Frame = 1
Query:    7 RNQLMNKFIITDLGEISLILGMEVLHNKQTSTLQLPQHKYVLSILDRFNILSANPTKTPGIKTDPSAASNSDSLLDAAATKKYQAMEGSLIFLTQCTRFDICFSVIQAARFMSAPTQQHLVTEKRILRYLRGYPDIPITYSRSKLELVGYSDASYCT-----RSTTGTMFF-ANGLVYFSSRLEKITATSTTEVELIALAACAKQGIYLLGICRELALE-INSCQVRSENRGVLYLAKNSNYSSRSKHLAIRFAALCDWTRSKQLIVDHVLSSEQLADILTKHCERVTFARLCSKISIFG 885
            + +L ++F +TD+GE+  ILG++V  + +  TL + Q  YV ++L+RF +  ANP  TPG   + S     D +L     K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++   K +LRYLRG P +PI Y R +  L  ++D+S+       RSTTG +FF A GL+ + ++ + +TA ST E E+ AL+  A++ +Y+     EL  +   S  + S++ G L +A N+ +S R+KH+ +R+  + +     Q+ + H  S  QLADI TK+  +  FA +  +I  F 
Sbjct:  557 KKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 856          
BLAST of mRNA_H-paniculata_contig23695.6400.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 7.320e-52
Identity = 105/300 (35.00%), Postives = 165/300 (55.00%), Query Frame = 1
Query:    7 RNQLMNKFIITDLGEISLILGMEVLHNKQTSTLQLPQHKYVLSILDRFNILSANPTKTPGIKTDPSAASNSDSLLDAAATKKYQAMEGSLIFLTQCTRFDICFSVIQAARFMSAPTQQHLVTEKRILRYLRGYPDIPITYSRSKLELVGYSDASYCTRSTTGTM------FFANGLVYFSSRLEKITATSTTEVELIALAACAKQGIYLLGICRELAL--EINSCQVRSENRGVLYLAKNSNYSSRSKHLAIRFAALCDWTRSKQLIVDHVLSSEQLADILTKHCERVTFARLCSKISIF 882
            + +L  +F +TDLGE SL+LGME+  +++ +TL + Q  Y  SIL+RF +  + PT TPG  ++ S     D+LLD   T+KYQ + GSL+++ Q  R+DI ++  Q AR M+ P++ H+V  K  LRYL G  D  ITY +   +L  +SD+++      G          AN  + F S L+ +TA ST E EL+A A   K+ ++   +  EL    E     V  +N   L+   N ++SSR+KH+A+RF  + +     ++ + +  + + LADI TKH  +  F  L   I+ F
Sbjct:  136 KGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNF 435          
BLAST of mRNA_H-paniculata_contig23695.6400.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.920e-51
Identity = 107/308 (34.74%), Postives = 177/308 (57.47%), Query Frame = 1
Query:    7 RNQLMNKFIITDLGEISLILGMEVLHNKQTSTLQLPQHKYVLSILDRFNILSANPTKTPGIKTDPSAASNSDSLLDAAATKKYQAMEGSLIFLTQCTRFDICFSVIQAARFMSAPTQQHLVTEKRILRYLRGYPDIPITYSRSKLELVG-------YSDASYCT-----RSTTGTMFF-ANGLVYFSSRLEKITATSTTEVELIALAACAKQG-IYLLGICRELALE-INSCQVRSENRGVLYLAKNSNYSSRSKHLAIRFAALCDWTRSKQLIVDHVLSSEQLADILTKHCERVTFARLCSKISIFG 885
            + +L ++F +TD+GE+  ILG++V  + +  TL + Q  YV ++L+RF +  ANP  TPG   + S     D +L     K YQ+M GS+++L QCTRFD+ ++ +Q ++  S P Q ++   K +LRYLRG P +PI Y R ++ L         ++D+S+       RSTTG +FF A GL+ + ++ + +TA ST E E+ AL+  A++  +Y+     EL  +   S  + S++ G L +A N+ +S R+KH+A+R+  + +     Q+ + H  S  QLADI TK+  +  FA +  +I  F 
Sbjct:  780 KKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYLPKHRFASIIQQIKDFS 1087          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23695.6400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC04_9PHAE1.920e-5835.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J897_9PHAE2.650e-5738.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF46_9PHAE1.010e-5636.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE3.430e-5635.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K4S5_9PHAE2.600e-5533.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KUJ3_9PHAE5.290e-5535.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE5.630e-5535.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE6.320e-5535.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L5U2_9PHAE7.320e-5235.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JJR8_9PHAE3.920e-5134.74Integrase catalytic domain-containing protein n=11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23695contigH-paniculata_contig23695:906..1796 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.1
Seed ortholog evalue1e-34
Seed eggNOG ortholog67593.Physo139221
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size891
Cds size873
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.1661122-UTR-H-paniculata_contig23695:905..9231622929674.1661122-UTR-H-paniculata_contig23695:905..923Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23695 906..923 +
1691480961.6588628-UTR-H-paniculata_contig23695:905..9231691480961.6588628-UTR-H-paniculata_contig23695:905..923Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23695 906..923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.188353-CDS-H-paniculata_contig23695:923..17961622929674.188353-CDS-H-paniculata_contig23695:923..1796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23695 924..1796 +
1691480961.6728053-CDS-H-paniculata_contig23695:923..17961691480961.6728053-CDS-H-paniculata_contig23695:923..1796Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23695 924..1796 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23695.6400.1prot_H-paniculata_contig23695.6400.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23695 924..1796 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23695.6400.1

>prot_H-paniculata_contig23695.6400.1 ID=prot_H-paniculata_contig23695.6400.1|Name=mRNA_H-paniculata_contig23695.6400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=291bp
MNKFIITDLGEISLILGMEVLHNKQTSTLQLPQHKYVLSILDRFNILSAN
PTKTPGIKTDPSAASNSDSLLDAAATKKYQAMEGSLIFLTQCTRFDICFS
VIQAARFMSAPTQQHLVTEKRILRYLRGYPDIPITYSRSKLELVGYSDAS
YCTRSTTGTMFFANGLVYFSSRLEKITATSTTEVELIALAACAKQGIYLL
GICRELALEINSCQVRSENRGVLYLAKNSNYSSRSKHLAIRFAALCDWTR
SKQLIVDHVLSSEQLADILTKHCERVTFARLCSKISIFGK*
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mRNA from alignment at H-paniculata_contig23695:906..1796+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23695.6400.1 ID=mRNA_H-paniculata_contig23695.6400.1|Name=mRNA_H-paniculata_contig23695.6400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=891bp|location=Sequence derived from alignment at H-paniculata_contig23695:906..1796+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACTACCGCAACCAACTCATGAACAAGTTCATCATCACGGACCTTGGAGA GATATCCCTTATTCTTGGCATGGAGGTACTGCACAACAAACAAACTAGCA CCCTTCAGCTACCACAGCACAAGTACGTACTGTCCATATTGGACAGGTTC AACATTTTATCGGCAAATCCTACCAAGACGCCAGGTATTAAAACGGACCC AAGTGCTGCTAGCAATAGTGACAGCCTACTGGATGCAGCAGCCACAAAGA AGTATCAAGCCATGGAAGGGAGTCTCATCTTCCTGACTCAGTGTACAAGA TTCGACATCTGCTTCAGCGTCATCCAAGCAGCACGGTTCATGAGTGCACC AACCCAACAGCACTTGGTGACAGAAAAACGCATTCTTCGCTATTTGCGGG GCTACCCTGATATTCCAATCACCTACAGTAGAAGCAAGCTGGAATTGGTC GGCTACTCTGACGCATCGTACTGCACAAGGTCTACAACGGGCACGATGTT CTTTGCTAACGGATTGGTATACTTCTCGTCTCGACTTGAGAAGATCACAG CTACAAGCACAACTGAGGTGGAACTCATCGCACTAGCCGCATGCGCTAAA CAGGGTATTTACCTTCTAGGGATCTGCAGAGAACTTGCCCTTGAAATCAA CAGCTGTCAAGTCCGTAGTGAGAACAGAGGCGTCCTCTATCTTGCAAAAA ATAGCAATTATTCCAGCCGCAGCAAACATCTAGCCATCAGATTTGCAGCA CTTTGTGACTGGACCAGGAGCAAGCAGCTCATCGTCGACCATGTATTAAG TTCAGAGCAGCTAGCCGACATCCTCACTAAGCACTGTGAGAGAGTGACGT TTGCTCGACTATGCAGCAAAATTTCGATATTTGGAAAATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23695:906..1796+

>mRNA_H-paniculata_contig23695.6400.1 ID=mRNA_H-paniculata_contig23695.6400.1|Name=mRNA_H-paniculata_contig23695.6400.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig23695:906..1796+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAACAAGTTCATCATCACGGACCTTGGAGAGATATCCCTTATTCTTGG
CATGGAGGTACTGCACAACAAACAAACTAGCACCCTTCAGCTACCACAGC
ACAAGTACGTACTGTCCATATTGGACAGGTTCAACATTTTATCGGCAAAT
CCTACCAAGACGCCAGGTATTAAAACGGACCCAAGTGCTGCTAGCAATAG
TGACAGCCTACTGGATGCAGCAGCCACAAAGAAGTATCAAGCCATGGAAG
GGAGTCTCATCTTCCTGACTCAGTGTACAAGATTCGACATCTGCTTCAGC
GTCATCCAAGCAGCACGGTTCATGAGTGCACCAACCCAACAGCACTTGGT
GACAGAAAAACGCATTCTTCGCTATTTGCGGGGCTACCCTGATATTCCAA
TCACCTACAGTAGAAGCAAGCTGGAATTGGTCGGCTACTCTGACGCATCG
TACTGCACAAGGTCTACAACGGGCACGATGTTCTTTGCTAACGGATTGGT
ATACTTCTCGTCTCGACTTGAGAAGATCACAGCTACAAGCACAACTGAGG
TGGAACTCATCGCACTAGCCGCATGCGCTAAACAGGGTATTTACCTTCTA
GGGATCTGCAGAGAACTTGCCCTTGAAATCAACAGCTGTCAAGTCCGTAG
TGAGAACAGAGGCGTCCTCTATCTTGCAAAAAATAGCAATTATTCCAGCC
GCAGCAAACATCTAGCCATCAGATTTGCAGCACTTTGTGACTGGACCAGG
AGCAAGCAGCTCATCGTCGACCATGTATTAAGTTCAGAGCAGCTAGCCGA
CATCCTCACTAAGCACTGTGAGAGAGTGACGTTTGCTCGACTATGCAGCA
AAATTTCGATATTTGGAAAATGAATGAACAAGTTCATCATCACGGACCTT
GGAGAGATATCCCTTATTCTTGGCATGGAGGTACTGCACAACAAACAAAC
TAGCACCCTTCAGCTACCACAGCACAAGTACGTACTGTCCATATTGGACA
GGTTCAACATTTTATCGGCAAATCCTACCAAGACGCCAGGTATTAAAACG
GACCCAAGTGCTGCTAGCAATAGTGACAGCCTACTGGATGCAGCAGCCAC
AAAGAAGTATCAAGCCATGGAAGGGAGTCTCATCTTCCTGACTCAGTGTA
CAAGATTCGACATCTGCTTCAGCGTCATCCAAGCAGCACGGTTCATGAGT
GCACCAACCCAACAGCACTTGGTGACAGAAAAACGCATTCTTCGCTATTT
GCGGGGCTACCCTGATATTCCAATCACCTACAGTAGAAGCAAGCTGGAAT
TGGTCGGCTACTCTGACGCATCGTACTGCACAAGGTCTACAACGGGCACG
ATGTTCTTTGCTAACGGATTGGTATACTTCTCGTCTCGACTTGAGAAGAT
CACAGCTACAAGCACAACTGAGGTGGAACTCATCGCACTAGCCGCATGCG
CTAAACAGGGTATTTACCTTCTAGGGATCTGCAGAGAACTTGCCCTTGAA
ATCAACAGCTGTCAAGTCCGTAGTGAGAACAGAGGCGTCCTCTATCTTGC
AAAAAATAGCAATTATTCCAGCCGCAGCAAACATCTAGCCATCAGATTTG
CAGCACTTTGTGACTGGACCAGGAGCAAGCAGCTCATCGTCGACCATGTA
TTAAGTTCAGAGCAGCTAGCCGACATCCTCACTAAGCACTGTGAGAGAGT
GACGTTTGCTCGACTATGCAGCAAAATTTCGATATTTGGAAAATGA
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