mRNA_H-paniculata_contig23693.6398.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23693.6398.1
Unique NamemRNA_H-paniculata_contig23693.6398.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23693.6398.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 8.040e-21
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   13 VEAKDVFLTSTSDQGKNMVNACELVGVKVMLCNAHRLNSVTIWSLRIGRSEKTCKNPEM-RLLKKLAACVGVFSHSA 240
            V+ KDVFL  T DQG N+VNAC  + V+V+ CNAHRLNSVT+W+L I  S +T +NP M +L+K+LAA VGVFSHSA
Sbjct:   16 VQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSA 92          
BLAST of mRNA_H-paniculata_contig23693.6398.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 9.330e-21
Identity = 48/77 (62.34%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   13 VEAKDVFLTSTSDQGKNMVNACELVGVKVMLCNAHRLNSVTIWSLRIGRSEKTCKNPEM-RLLKKLAACVGVFSHSA 240
            V+ KDVFL  T DQG N+VNAC  + V+V+ CNAHRLNSVT+W+L I  S +T +NP M +L+K+LAA VGVFSHSA
Sbjct:  344 VQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSA 420          
BLAST of mRNA_H-paniculata_contig23693.6398.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.340e-20
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   13 VEAKDVFLTSTSDQGKNMVNACELVGVKVMLCNAHRLNSVTIWSLRIGRSEKTCKNPEMRLLKKLAACVGVFSHSA 240
            VE++DVFL  T DQGKN+VNAC  +GV V+ CN HR+NS  +W+L I  S  TCKN  M   KKLAA VGVFSHSA
Sbjct:  165 VESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPM---KKLAALVGVFSHSA 237          
BLAST of mRNA_H-paniculata_contig23693.6398.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.200e-20
Identity = 47/76 (61.84%), Postives = 55/76 (72.37%), Query Frame = 1
Query:   13 VEAKDVFLTSTSDQGKNMVNACELVGVKVMLCNAHRLNSVTIWSLRIGRSEKTCKNPEMRLLKKLAACVGVFSHSA 240
            VE++DVFL  T DQGKN+VNAC  +GV V+ CN HR+NS  +W+L I  S  TCKN  M   KKLAA VGVFSHSA
Sbjct:  165 VESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKPM---KKLAALVGVFSHSA 237          
BLAST of mRNA_H-paniculata_contig23693.6398.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.010e-19
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 1
Query:   13 VEAKDVFLTSTSDQGKNMVNACELVGVKVMLCNAHRLNSVTIWSLRIGRSEKTCKNPEMR-LLKKLAACVGVFSHSA 240
            VE  DVFL  T DQG N+VNAC  +GV+V+ CN HR+NS  +W+L I  S  TC+N +M  L+KKLAA VGVFS SA
Sbjct:   20 VEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKLAALVGVFSPSA 96          
BLAST of mRNA_H-paniculata_contig23693.6398.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 6.220e-18
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   13 VEAKDVFLTSTSDQGKNMVNACELVGVKVMLCNAHRLNSVTIWSLRIGRSEKTCKNPEMR-LLKKLAACVGVFSHSA 240
            V+  DVFL  T DQGKN+VNA   +GV V+ CN HR+NS  +W+L I    +TCKN  M  L+KKLAA VGVFSHSA
Sbjct:  162 VQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKLAASVGVFSHSA 238          
BLAST of mRNA_H-paniculata_contig23693.6398.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 5.660e-17
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   13 VEAKDVFLTSTSDQGKNMVNACELVGVKVMLCNAHRLNSVTIWSLRIGRSEKTCKNPEM-RLLKKLAACVGVFSHSA 240
            V+  DVFL  T DQGKN++NAC  +GV V+ CN HRLN+  +W+L  G + K   NP M  L+KKLAA VGVFSHSA
Sbjct:  161 VQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWAL--GIAGKGRLNPAMGTLMKKLAAMVGVFSHSA 235          
BLAST of mRNA_H-paniculata_contig23693.6398.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 5.720e-17
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 1
Query:   13 VEAKDVFLTSTSDQGKNMVNACELVGVKVMLCNAHRLNSVTIWSLRIGRSEKTCKNPEM-RLLKKLAACVGVFSHSA 240
            V+  DVFL  T DQGKN++NAC  +GV V+ CN HRLN+  +W+L  G + K   NP M  L+KKLAA VGVFSHSA
Sbjct:  356 VQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWAL--GIAGKGRLNPAMGTLMKKLAAMVGVFSHSA 430          
BLAST of mRNA_H-paniculata_contig23693.6398.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 1.990e-16
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   13 VEAKDVFLTSTSDQGKNMVNACELVGVKVMLCNAHRLNSVTIWSLRI---GRSEKTCKNPEMRLLKKLAACVGVFSHSA 240
            VE KDVFL  T DQG N+VNAC+ +GV V+ CN HR+N+  +W+L I   GR  K   +    L+KKLAA VGVFSHSA
Sbjct:  354 VEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGRRNKVMGD----LMKKLAALVGVFSHSA 428          
BLAST of mRNA_H-paniculata_contig23693.6398.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.040e-14
Identity = 40/71 (56.34%), Postives = 50/71 (70.42%), Query Frame = 1
Query:   31 FLTSTSDQGKNMVNACELVGVKVMLCNAHRLNSVTIWSLRIGRSEKTCKNPEM-RLLKKLAACVGVFSHSA 240
            FL  T DQGKN++NAC  + V V+ CN HR+N+  +W+L  G + K  KNP M  L+KKLAA VGVFSHSA
Sbjct:   11 FLAFTVDQGKNIINACTALDVTVVECNCHRVNTAVVWAL--GIAAKGRKNPTMGTLMKKLAAMVGVFSHSA 79          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23693.6398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KAN7_9PHAE8.040e-2162.34Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE9.330e-2162.34Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JQI6_9PHAE2.340e-2061.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE3.200e-2061.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE5.010e-1958.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE6.220e-1858.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTB8_9PHAE5.660e-1757.14Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE5.720e-1757.14Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JRT6_9PHAE1.990e-1655.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE1.040e-1456.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23693contigH-paniculata_contig23693:247..487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size241
Cds size240
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929674.0709994-CDS-H-paniculata_contig23693:246..4861622929674.0709994-CDS-H-paniculata_contig23693:246..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23693 247..486 +
1691480961.6273234-CDS-H-paniculata_contig23693:246..4861691480961.6273234-CDS-H-paniculata_contig23693:246..486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23693 247..486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23693.6398.1prot_H-paniculata_contig23693.6398.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23693 247..486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23693.6398.1

>prot_H-paniculata_contig23693.6398.1 ID=prot_H-paniculata_contig23693.6398.1|Name=mRNA_H-paniculata_contig23693.6398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
IRKYVEAKDVFLTSTSDQGKNMVNACELVGVKVMLCNAHRLNSVTIWSLR
IGRSEKTCKNPEMRLLKKLAACVGVFSHSA
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mRNA from alignment at H-paniculata_contig23693:247..487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23693.6398.1 ID=mRNA_H-paniculata_contig23693.6398.1|Name=mRNA_H-paniculata_contig23693.6398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=241bp|location=Sequence derived from alignment at H-paniculata_contig23693:247..487+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTAGGAAATATGTCGAGGCGAAGGATGTGTTCCTCACGTCCACCTCGGA TCAAGGCAAGAACATGGTTAATGCGTGTGAGTTGGTGGGGGTTAAGGTTA TGCTGTGCAACGCTCACCGCCTGAACTCGGTCACCATCTGGAGTTTGAGA ATTGGCCGTTCGGAAAAGACATGCAAAAATCCGGAGATGAGGCTCCTGAA GAAGCTGGCGGCATGCGTGGGCGTCTTCAGTCACTCGGCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig23693:247..487+

>mRNA_H-paniculata_contig23693.6398.1 ID=mRNA_H-paniculata_contig23693.6398.1|Name=mRNA_H-paniculata_contig23693.6398.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig23693:247..487+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTAGGAAATATGTCGAGGCGAAGGATGTGTTCCTCACGTCCACCTCGGA
TCAAGGCAAGAACATGGTTAATGCGTGTGAGTTGGTGGGGGTTAAGGTTA
TGCTGTGCAACGCTCACCGCCTGAACTCGGTCACCATCTGGAGTTTGAGA
ATTGGCCGTTCGGAAAAGACATGCAAAAATCCGGAGATGAGGCTCCTGAA
GAAGCTGGCGGCATGCGTGGGCGTCTTCAGTCACTCGGCGATTAGGAAAT
ATGTCGAGGCGAAGGATGTGTTCCTCACGTCCACCTCGGATCAAGGCAAG
AACATGGTTAATGCGTGTGAGTTGGTGGGGGTTAAGGTTATGCTGTGCAA
CGCTCACCGCCTGAACTCGGTCACCATCTGGAGTTTGAGAATTGGCCGTT
CGGAAAAGACATGCAAAAATCCGGAGATGAGGCTCCTGAAGAAGCTGGCG
GCATGCGTGGGCGTCTTCAGTCACTCGGCG
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