mRNA_H-paniculata_contig23663.6395.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23663.6395.1
Unique NamemRNA_H-paniculata_contig23663.6395.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23663.6395.1 vs. uniprot
Match: A0A6H5J6W1_9PHAE (Cathepsin X n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6W1_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.480e-15
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 YEYASNNPVPFDACQQYQAEDNKCDAIGKCKTCW 102
            YEYASNNPVPFD CQ YQAEDN CDAIGKCKTCW
Sbjct:  135 YEYASNNPVPFDTCQNYQAEDNTCDAIGKCKTCW 168
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BLAST of mRNA_H-paniculata_contig23663.6395.1 vs. uniprot
Match: D7FH69_ECTSI (Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH69_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 4.480e-15
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 YEYASNNPVPFDACQQYQAEDNKCDAIGKCKTCW 102
            YEYASNNPVPFD CQ YQAEDN CDAIGKCKTCW
Sbjct:  145 YEYASNNPVPFDTCQNYQAEDNTCDAIGKCKTCW 178
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BLAST of mRNA_H-paniculata_contig23663.6395.1 vs. uniprot
Match: D8LCL2_ECTSI (Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL2_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 6.130e-15
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 YEYASNNPVPFDACQQYQAEDNKCDAIGKCKTCW 102
            YEYASNNPVPFD CQQYQA DN CDAIGKCKTCW
Sbjct:  115 YEYASNNPVPFDTCQQYQASDNTCDAIGKCKTCW 148
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BLAST of mRNA_H-paniculata_contig23663.6395.1 vs. uniprot
Match: A0A7S2RSF5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSF5_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.810e-6
Identity = 19/34 (55.88%), Postives = 29/34 (85.29%), Query Frame = 3 
Query:   93 DVLAVETYPNAIVAEYGTVVGEDDIMAEVFARGP 194
            D  A++ +PNA +AEYGT+ GE+D++AE++ARGP
Sbjct:  226 DCAAIDVFPNASIAEYGTISGEEDMLAEIYARGP 259
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BLAST of mRNA_H-paniculata_contig23663.6395.1 vs. uniprot
Match: A0A7R9SWC0_9CHLO (Hypothetical protein n=1 Tax=Polyblepharides amylifera TaxID=1486889 RepID=A0A7R9SWC0_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 5.190e-6
Identity = 21/31 (67.74%), Postives = 27/31 (87.10%), Query Frame = 3 
Query:  102 AVETYPNAIVAEYGTVVGEDDIMAEVFARGP 194
            A+ET+PN  VAEYG + GED++MAE+FARGP
Sbjct:  211 AIETFPNVTVAEYGMLSGEDNMMAEIFARGP 241
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BLAST of mRNA_H-paniculata_contig23663.6395.1 vs. uniprot
Match: A0A7S1G5V0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G5V0_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.140e-5
Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = 3 
Query:   99 LAVETYPNAIVAEYGTVVGEDDIMAEVFARGP 194
            +A+  YPN  VAEYGTV G+++IMAE++ARGP
Sbjct:   95 VALRRYPNMTVAEYGTVTGDENIMAEIYARGP 126
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BLAST of mRNA_H-paniculata_contig23663.6395.1 vs. uniprot
Match: Q01FU9_OSTTA (Peptidase C1A, papain C-terminal n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=Q01FU9_OSTTA)

HSP 1 Score: 49.3 bits (116), Expect = 3.420e-5
Identity = 21/31 (67.74%), Postives = 26/31 (83.87%), Query Frame = 3 
Query:  102 AVETYPNAIVAEYGTVVGEDDIMAEVFARGP 194
            A+ T+PNA VAEYGT+ GE  IMAE++ARGP
Sbjct:  235 ALSTFPNATVAEYGTIRGEKAIMAEIYARGP 265
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BLAST of mRNA_H-paniculata_contig23663.6395.1 vs. uniprot
Match: A0A7S0RVS0_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RVS0_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 8.770e-5
Identity = 19/30 (63.33%), Postives = 26/30 (86.67%), Query Frame = 3 
Query:  105 VETYPNAIVAEYGTVVGEDDIMAEVFARGP 194
            +E +PNA VAEYGTV GE+++M E++ARGP
Sbjct:  231 IEMFPNATVAEYGTVEGEENMMKEIYARGP 260
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BLAST of mRNA_H-paniculata_contig23663.6395.1 vs. uniprot
Match: C1FFA0_MICCC (Cysteine endopeptidase n=3 Tax=Micromonas TaxID=38832 RepID=C1FFA0_MICCC)

HSP 1 Score: 48.1 bits (113), Expect = 8.770e-5
Identity = 20/31 (64.52%), Postives = 27/31 (87.10%), Query Frame = 3 
Query:  102 AVETYPNAIVAEYGTVVGEDDIMAEVFARGP 194
            A++++PNA +AEYG V GE +IMAEV+ARGP
Sbjct:  231 ALDSFPNASIAEYGEVSGEKEIMAEVYARGP 261
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23663.6395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5J6W1_9PHAE4.480e-1591.18Cathepsin X n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FH69_ECTSI4.480e-1591.18Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D8LCL2_ECTSI6.130e-1591.18Cathepsin X n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A7S2RSF5_9STRA3.810e-655.88Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9SWC0_9CHLO5.190e-667.74Hypothetical protein n=1 Tax=Polyblepharides amyli... [more]
A0A7S1G5V0_9STRA1.140e-562.50Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
Q01FU9_OSTTA3.420e-567.74Peptidase C1A, papain C-terminal n=2 Tax=Ostreococ... [more]
A0A7S0RVS0_9CHLO8.770e-563.33Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
C1FFA0_MICCC8.770e-564.52Cysteine endopeptidase n=3 Tax=Micromonas TaxID=38... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23663contigH-paniculata_contig23663:161..1242 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.0
Seed ortholog evalue3.6e-12
Seed eggNOG ortholog2880.D7FH69
KEGG koko:K08568
KEGG Pathwayko04142,ko04210,map04142,map04210
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transferase activity, transferring glycosyl groups
EggNOG OGsCOG4870@1,KOG1543@2759
EC3.4.18.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons2
Model size196
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.6868002-CDS-H-paniculata_contig23663:160..2621622929673.6868002-CDS-H-paniculata_contig23663:160..262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23663 161..262 +
1691480961.4408703-CDS-H-paniculata_contig23663:160..2621691480961.4408703-CDS-H-paniculata_contig23663:160..262Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23663 161..262 +
1622929673.7036185-CDS-H-paniculata_contig23663:1149..12421622929673.7036185-CDS-H-paniculata_contig23663:1149..1242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23663 1150..1242 +
1691480961.4534338-CDS-H-paniculata_contig23663:1149..12421691480961.4534338-CDS-H-paniculata_contig23663:1149..1242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23663 1150..1242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23663.6395.1prot_H-paniculata_contig23663.6395.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23663 161..1242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23663.6395.1

>prot_H-paniculata_contig23663.6395.1 ID=prot_H-paniculata_contig23663.6395.1|Name=mRNA_H-paniculata_contig23663.6395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
YEYASNNPVPFDACQQYQAEDNKCDAIGKCKTCWPWKPTRTPSWRSTEPW
WVKTTSWRKFSLAVQ
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mRNA from alignment at H-paniculata_contig23663:161..1242+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23663.6395.1 ID=mRNA_H-paniculata_contig23663.6395.1|Name=mRNA_H-paniculata_contig23663.6395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1082bp|location=Sequence derived from alignment at H-paniculata_contig23663:161..1242+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGAGTATGCCAGCAACAACCCCGTGCCGTTTGATGCCTGTCAGCAGTA
TCAGGCAGAAGACAACAAGTGCGACGCTATCGGCAAATGCAAGACGTGTT
GGGTGAGTTGGTCCTAACCAATCAGGACATCTCAAGTACACGCTCTTAAC
GATCAGTCAGGACTGATGGTGAATACTGTAATACTGGGAGGCATCGCAAG
GAGGGTGTGAGCGATTTCTAAACCCGAGTGATTCTCTCCATCACTAGGGC
ACTATTTACTACCGGCAACGGATATATAGTGTGTCGTTTAGATATTGTGT
TGAGATATATCTGCGTCGATTGACGGGTTGTTTCCACCGCGCAAGGACTG
TCTTGGTCGTCGAGATTGTTGCGTTTGAAAGCCATTCTTATCCCGGTAAC
CCGGTTTTCTTGTTCGGTCGAACGTTGGCGTCTTATGTCAAAGTCCTGTT
TTTTTTTTTTTGTACTCTGAAGCTGGTTATGTCGACGAGGTTTGTTATGT
GTGTGTGTGTTCTTTTCTCGCTGGTGGTGGGAACTGAGGCCGTTCGTTTT
AGACGCTGGAATATCCTTATACACGTCGCGATCTTGGCTTTTATAGGCAC
TCTGGTCCATCTCTCACAAGGTACGGAAAACGTCCCTTACGTTTGGAAAA
ATCGGGTTTTGACAACGATTTAACCTTTTTTTTGTCAAGAAACGGCCCAA
CATTCATATCCATGACACGTCGGACAAAACAGATCTCTGTGACATCGGGT
TTGGTCTTTAGGGCACATGTGGCACAGCATGGTACCTTCCTCTTTGTAGA
GTTCCGTGCGTGCAAACAAACGAGAGAACGTTTCATCGGACACTCGCTGC
CATCATCCTCCTGCCGAGTGAAACTCAGACATAGACGAATGTTTTTTTTT
TTTCAGTGGCTTACTAAATCCGGTATATTTTTCCTATTACGGTCGTTTTA
TTTGTATTACTTTCCAGAATTTTTACGACGCCTGCGAAGCCGTGGAAACC
TACCCGAACGCCATCGTGGCGGAGTACGGAACCGTGGTGGGTGAAGACGA
CATCATGGCGGAAGTTTTCGCTCGCGGTCCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig23663:161..1242+

>mRNA_H-paniculata_contig23663.6395.1 ID=mRNA_H-paniculata_contig23663.6395.1|Name=mRNA_H-paniculata_contig23663.6395.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig23663:161..1242+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACGAGTATGCCAGCAACAACCCCGTGCCGTTTGATGCCTGTCAGCAGTA
TCAGGCAGAAGACAACAAGTGCGACGCTATCGGCAAATGCAAGACGTGTT
GGTACGAGTATGCCAGCAACAACCCCGTGCCGTTTGATGCCTGTCAGCAG
TATCAGGCAGAAGACAACAAGTGCGACGCTATCGGCAAATGCAAGACGTG
TTGGCCGTGGAAACCTACCCGAACGCCATCGTGGCGGAGTACGGAACCGT
GGTGGGTGAAGACGACATCATGGCGGAAGTTTTCGCTCGCGGTCCAGCCG
TGGAAACCTACCCGAACGCCATCGTGGCGGAGTACGGAACCGTGGTGGGT
GAAGACGACATCATGGCGGAAGTTTTCGCTCGCGGTCCAG
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