mRNA_H-paniculata_contig23650.6393.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23650.6393.1
Unique NamemRNA_H-paniculata_contig23650.6393.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23650.6393.1 vs. uniprot
Match: D8LPV2_ECTSI (Nucleotidyltransferase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV2_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 3.820e-29
Identity = 58/82 (70.73%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    1 VTDVEKIPSKKVPLVKFVHAATKQQVDVCFEQQSGIESGLAARALMRQMAPVRPLVMVLKAYMSQRQINVTYHGFVGSFLLQ 246
            V +V  I S +VPLVKFVH  +  QVDVCF+Q+SG++SG AARA+MRQM PVRPLVMVLKAYM QR++N TYHG VGSFLLQ
Sbjct:  352 VREVTVIKSARVPLVKFVHVGSGVQVDVCFDQESGMKSGRAARAMMRQMQPVRPLVMVLKAYMGQRKLNETYHGGVGSFLLQ 433          
BLAST of mRNA_H-paniculata_contig23650.6393.1 vs. uniprot
Match: A0A6H5K966_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K966_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.610e-28
Identity = 56/82 (68.29%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    1 VTDVEKIPSKKVPLVKFVHAATKQQVDVCFEQQSGIESGLAARALMRQMAPVRPLVMVLKAYMSQRQINVTYHGFVGSFLLQ 246
            V +V  I   +VPLVKFVH  +  QVDVCF+Q+SG++SG AARA+MRQM PVRPLVMVLKAYM+QR++N TYHG +GSFLLQ
Sbjct:  273 VREVTVIKKARVPLVKFVHVGSGVQVDVCFDQESGMQSGRAARAMMRQMQPVRPLVMVLKAYMAQRKLNETYHGGIGSFLLQ 354          
BLAST of mRNA_H-paniculata_contig23650.6393.1 vs. uniprot
Match: A0A7S3S2P8_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S2P8_EMIHU)

HSP 1 Score: 79.3 bits (194), Expect = 1.720e-15
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    7 DVEKIPSKKVPLVKFVHAATKQQVDVCFEQQSGIESGLAARALMRQMAPVRPLVMVLKAYMSQRQINVTYHGFVGSFLL 243
            +VE I S KVP+VK+V   +   VD+C EQQ GI S   A    RQ  P RPLV++LK Y+S R +N T+ G VGSFLL
Sbjct:  148 EVEVIGSAKVPIVKYVDGPSGLSVDLCLEQQDGIRSSALATKAARQFPPFRPLVLLLKRYLSSRGLNDTFTGGVGSFLL 226          
BLAST of mRNA_H-paniculata_contig23650.6393.1 vs. uniprot
Match: A0A7S3ZN42_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZN42_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.320e-15
Identity = 37/79 (46.84%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   10 VEKIPSKKVPLVKFVHAATKQQVDVCFEQQSGIESGLAARALMRQMAPVRPLVMVLKAYMSQRQINVTYHGFVGSFLLQ 246
            +E + S ++PLVK+V AA+   VDV F+ +SG+ +G   R+ M  M P+RPLV+VLK +++QR +N T+ G VGS++LQ
Sbjct:  222 LEVVESARIPLVKYVDAASNTAVDVSFDVESGLRTGKLVRSYMDAMPPLRPLVLVLKFFLAQRGLNETFTGGVGSYMLQ 300          
BLAST of mRNA_H-paniculata_contig23650.6393.1 vs. uniprot
Match: A0A7S2EAC2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EAC2_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.500e-15
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   10 VEKIPSKKVPLVKFVHAATKQQVDVCFEQQSGIESGLAARALMRQMAPVRPLVMVLKAYMSQRQINVTYHGFVGSFLLQ 246
            +E I + ++P+VKF HA T   VD+C  Q  G ES    +  M+ M P+RPL +VLK +M  R INV Y G VGSF+LQ
Sbjct:  283 LEVIGNTRIPIVKFTHAPTNLDVDICCNQTGGPESAELIKRFMQAMPPLRPLTIVLKYFMKSRAINVPYQGGVGSFMLQ 361          
BLAST of mRNA_H-paniculata_contig23650.6393.1 vs. uniprot
Match: A0A7S4DIS6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIS6_HETAK)

HSP 1 Score: 78.2 bits (191), Expect = 4.030e-15
Identity = 36/79 (45.57%), Postives = 53/79 (67.09%), Query Frame = 1
Query:   10 VEKIPSKKVPLVKFVHAATKQQVDVCFEQQSGIESGLAARALMRQMAPVRPLVMVLKAYMSQRQINVTYHGFVGSFLLQ 246
            +E I S ++P+VK  H  ++  VD+ F Q SG+ +G   +  MR+  PVRPL++V K ++ QR++N TY G VGSFLLQ
Sbjct:  181 LEVIDSARIPIVKLRHKESQVHVDISFNQPSGLATGACVQRFMRKFPPVRPLLLVAKKFLQQRELNETYTGGVGSFLLQ 259          
BLAST of mRNA_H-paniculata_contig23650.6393.1 vs. uniprot
Match: A0A7S2XW69_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XW69_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.640e-14
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   10 VEKIPSKKVPLVKFVHAATKQQVDVCFEQQSGIESGLAARALMRQMAPVRPLVMVLKAYMSQRQINVTYHGFVGSFLLQ 246
            +E +   ++PLVK  H  TK  +D+ F Q  G+E+G      +  + P+RPL++VLK +M QRQ+N T+ G VGSFLLQ
Sbjct:  157 IEVVSKARIPLVKVRHEETKVHLDISFGQPGGLETGALVNKFLSHLPPMRPLILVLKLFMVQRQLNETFLGGVGSFLLQ 235          
BLAST of mRNA_H-paniculata_contig23650.6393.1 vs. uniprot
Match: A0A0M0JJ68_9EUKA (Poly RNA polymerase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JJ68_9EUKA)

HSP 1 Score: 73.9 bits (180), Expect = 1.070e-13
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    4 TDVEKIPSKKVPLVKFVHAATKQQVDVCFEQQSGIESGLAARALMRQMAPVRPLVMVLKAYMSQRQINVTYHGFVGSFLLQ 246
            T +E +   +VP+VKFV  AT   VD+C E+ +G++S   AR  + +     PLV+VLK +++ R ++ TYHG VGS+LLQ
Sbjct:   93 TQLEVVDKARVPIVKFVDGATGVAVDICLEELTGLQSSALARKALAKFPQYGPLVLVLKRWLNARGLHDTYHGGVGSYLLQ 173          
BLAST of mRNA_H-paniculata_contig23650.6393.1 vs. uniprot
Match: A0A7S0PKD2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PKD2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.730e-13
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 1
Query:    1 VTDVEKIPSKKVPLVKFVHAATKQQVDVCFEQQSGIESGLAARALMRQMAPVRPLVMVLKAYMSQRQINVTYHGFVGSFLLQ 246
            +T +E I + +VPLVKF H+ T   VDV FE+ SG E+      +++++  ++PL+ VLKAY+S R +N  + G VGSFLLQ
Sbjct:  220 ITYLEVIQATRVPLVKFTHSPTNINVDVSFERLSGRENATYMNDMLKRIPCLKPLIFVLKAYLSARSLNEPFLGGVGSFLLQ 301          
BLAST of mRNA_H-paniculata_contig23650.6393.1 vs. uniprot
Match: A0A7S0GSK9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GSK9_9EUKA)

HSP 1 Score: 73.2 bits (178), Expect = 2.720e-13
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 1
Query:   10 VEKIPSKKVPLVKFVHAATKQQVDVCFEQQSGIESGLAARALMRQMAPVRPLVMVLKAYMSQRQINVTYHGFVGSFLLQ 246
            VE I + +VP++KFV +A+   VD+CF   SG  +            P RPLVMVLK +++ R++N TY G VGSF+LQ
Sbjct:  256 VEVIANARVPIIKFVDSASGLSVDICFNNDSGFHAAKIVNKHASMFVPFRPLVMVLKFFLAMRELNETYTGGVGSFVLQ 334          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23650.6393.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPV2_ECTSI3.820e-2970.73Nucleotidyltransferase family protein n=1 Tax=Ecto... [more]
A0A6H5K966_9PHAE2.610e-2868.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S3S2P8_EMIHU1.720e-1551.90Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S3ZN42_9STRA2.320e-1546.84Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2EAC2_9STRA3.500e-1548.10Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4DIS6_HETAK4.030e-1545.57Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2XW69_9STRA1.640e-1444.30Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A0M0JJ68_9EUKA1.070e-1343.21Poly RNA polymerase n=1 Tax=Chrysochromulina tobin... [more]
A0A7S0PKD2_9STRA1.730e-1345.12Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A7S0GSK9_9EUKA2.720e-1344.30Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23650contigH-paniculata_contig23650:2566..3742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.5e-23
Seed eggNOG ortholog2880.D8LPV2
KEGG koko:K03514,ko:K11700
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005844,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0008150,GO:0008152,GO:0008608,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0022402,GO:0030702,GO:0030880,GO:0031047,GO:0031048,GO:0031123,GO:0031124,GO:0031134,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031379,GO:0031380,GO:0032991,GO:0034641,GO:0035770,GO:0036464,GO:0040029,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045495,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0050000,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0060255,GO:0060293,GO:0061695,GO:0065007,GO:0070566,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098813,GO:0140014,GO:1901360,GO:1902494,GO:1902679,GO:1903047,GO:1903506,GO:1903507,GO:1990141,GO:1990234,GO:1990758,GO:1990904,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019,ko03036
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929673.2592335-CDS-H-paniculata_contig23650:2565..26581622929673.2592335-CDS-H-paniculata_contig23650:2565..2658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23650 2566..2658 -
1691480961.2515097-CDS-H-paniculata_contig23650:2565..26581691480961.2515097-CDS-H-paniculata_contig23650:2565..2658Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23650 2566..2658 -
1622929673.2762094-CDS-H-paniculata_contig23650:3589..37421622929673.2762094-CDS-H-paniculata_contig23650:3589..3742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23650 3590..3742 -
1691480961.2690616-CDS-H-paniculata_contig23650:3589..37421691480961.2690616-CDS-H-paniculata_contig23650:3589..3742Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23650 3590..3742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23650.6393.1prot_H-paniculata_contig23650.6393.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23650 2566..3742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23650.6393.1

>prot_H-paniculata_contig23650.6393.1 ID=prot_H-paniculata_contig23650.6393.1|Name=mRNA_H-paniculata_contig23650.6393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=82bp
VTDVEKIPSKKVPLVKFVHAATKQQVDVCFEQQSGIESGLAARALMRQMA
PVRPLVMVLKAYMSQRQINVTYHGFVGSFLLQ
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mRNA from alignment at H-paniculata_contig23650:2566..3742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23650.6393.1 ID=mRNA_H-paniculata_contig23650.6393.1|Name=mRNA_H-paniculata_contig23650.6393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1177bp|location=Sequence derived from alignment at H-paniculata_contig23650:2566..3742- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACGGATGTGGAGAAAATTCCGTCGAAGAAAGTTCCCTTGGTGAAGTT TGTACATGCAGCGACGAAGCAGCAGGTGGACGTCTGCTTCGAGCAACAGT CGGGCATCGAGTCGGGGCTGGCGGCCAGGGCGCTGATGCGTCAGATGGCT CCGGTAAGTCCGTGTGGTCATGATTATGTACAGTAGCATGTCTAAATAGT TGAATATATACAAATATATATGTATATATATATATATATGTATATTAATG GACAATTATGTTGTACTTCTAGAGGATGACGACGGCTAGCCACGCCCGTG GCAATTCTTGTTTTTTTTCTTGACTCATGGACTCGCTGCCCTCGCAGTAG CTGTAAGGAGTTTAGGTCAAATACTAATATTAATACACAAACATGTAGTA ATAGTACAGCAGATGGCCTCGTATAAGGTATACCTGTTCGGGTCATTCCT CTTTTCAAAATATAGGGATTTAGTATTGGGCTTTTATATGAATATGGCAT ACATGAACTATGTTTGATACACTTGTCGCTGTGCACCATCTATACCTTAC ACAGGCCTACCTACGATAGTAGACTGTCACATGTTGTTCTCCTTCGTCCT TCGCGGGGGAAAAGATGCATGCATCGTTTGCTTCTTTTACCTTTATTTTC CATTTATTTCTTCTTTGTATTTTTTTTCCTACGCTGTTTTGCGGAAAAAT TCGAATACTTTCAAATGGTTTTCACAAAAATCTAACGAGTATTCGCCTGA GTTTCAGAACGAGTTCGTGTATTTCATGTGCCCGTGGCCATCCACGACTG CTAATAATACTCTAAAATCGAATGGACAGGGGGGTGAATACTTTTTATTC TATGTGACCGCTCATTCTGAAACGCAGGTGAATACTTTCAATTCTTTGTG AAAACCATTTGCAAGTACTCGTATTTGCCCATGGGGCGAAAAATTGTGAT TTCGTGTATCTGTTTGCTGCCTCACTTCCACTTTTTTTTCTTTTTTTTTT TCCATTTCTCACCTCCACCCCCACCCCCATATGCGATATAATACCGTTCG TCTATTATTTGGTTCCCACGTATTGTTTTTGTAGGTGCGACCCTTGGTAA TGGTTCTGAAGGCGTACATGAGCCAGCGGCAGATCAACGTCACGTACCAC GGCTTCGTCGGGTCCTTCTTACTACAG
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Coding sequence (CDS) from alignment at H-paniculata_contig23650:2566..3742-

>mRNA_H-paniculata_contig23650.6393.1 ID=mRNA_H-paniculata_contig23650.6393.1|Name=mRNA_H-paniculata_contig23650.6393.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at H-paniculata_contig23650:2566..3742- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACGGATGTGGAGAAAATTCCGTCGAAGAAAGTTCCCTTGGTGAAGTT
TGTACATGCAGCGACGAAGCAGCAGGTGGACGTCTGCTTCGAGCAACAGT
CGGGCATCGAGTCGGGGCTGGCGGCCAGGGCGCTGATGCGTCAGATGGCT
CCGGTGACGGATGTGGAGAAAATTCCGTCGAAGAAAGTTCCCTTGGTGAA
GTTTGTACATGCAGCGACGAAGCAGCAGGTGGACGTCTGCTTCGAGCAAC
AGTCGGGCATCGAGTCGGGGCTGGCGGCCAGGGCGCTGATGCGTCAGATG
GCTCCGGTGCGACCCTTGGTAATGGTTCTGAAGGCGTACATGAGCCAGCG
GCAGATCAACGTCACGTACCACGGCTTCGTCGGGTCCTTCTTACTACAGG
TGCGACCCTTGGTAATGGTTCTGAAGGCGTACATGAGCCAGCGGCAGATC
AACGTCACGTACCACGGCTTCGTCGGGTCCTTCTTACTACAG
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