mRNA_H-paniculata_contig23644.6389.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23644.6389.1
Unique NamemRNA_H-paniculata_contig23644.6389.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23644.6389.1 vs. uniprot
Match: D7FSG0_ECTSI (Terminal deoxycytidyl transferase rev1, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG0_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.380e-21
Identity = 42/61 (68.85%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:   10 GAEGTMFKGVLAHINGYTKVPVASIREMLASRGGVIEAYNTSKCTHMICESLPYAKIRELR 192
            G++G +FKGV+AH NG+  VPV+++RE+L SRGG++EAYNTS+CTHMICE LP AKIRELR
Sbjct:   21 GSDGNVFKGVVAHFNGHFPVPVSTLRELLVSRGGIVEAYNTSRCTHMICEVLPAAKIRELR 81
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BLAST of mRNA_H-paniculata_contig23644.6389.1 vs. uniprot
Match: A0A6H5L1W8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1W8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 6.560e-21
Identity = 42/64 (65.62%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 GSSGAEGTMFKGVLAHINGYTKVPVASIREMLASRGGVIEAYNTSKCTHMICESLPYAKIRELR 192
            G   ++G +FKGV+AH NG+  VPV+++RE+L SRGG +EAYNTS+CTHMICE LP AKIRELR
Sbjct:  137 GKRSSDGNVFKGVVAHFNGHFPVPVSTLRELLVSRGGTVEAYNTSRCTHMICEVLPAAKIRELR 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23644.6389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSG0_ECTSI1.380e-2168.85Terminal deoxycytidyl transferase rev1, putative n... [more]
A0A6H5L1W8_9PHAE6.560e-2165.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23644contigH-paniculata_contig23644:2097..2288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7FSG0
KEGG koko:K03515
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000002,GO:0000731,GO:0002200,GO:0002206,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002565,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010224,GO:0016043,GO:0016444,GO:0016445,GO:0016740,GO:0016772,GO:0016779,GO:0017125,GO:0018130,GO:0019438,GO:0019985,GO:0031974,GO:0031981,GO:0032042,GO:0032501,GO:0032502,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0035822,GO:0035861,GO:0042276,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043504,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048731,GO:0048856,GO:0050896,GO:0051716,GO:0070013,GO:0070987,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090734,GO:0140097,GO:1901360,GO:1901362,GO:1901576
EggNOG free text desc.deoxycytidyl transferase activity
EggNOG OGsCOG0389@1,KOG2093@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons1
Model size192
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.6457577-CDS-H-paniculata_contig23644:2096..22641622929672.6457577-CDS-H-paniculata_contig23644:2096..2264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23644 2097..2264 -
1691480961.0721488-CDS-H-paniculata_contig23644:2096..22641691480961.0721488-CDS-H-paniculata_contig23644:2096..2264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23644 2097..2264 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.6562648-UTR-H-paniculata_contig23644:2264..22881622929672.6562648-UTR-H-paniculata_contig23644:2264..2288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23644 2265..2288 -
1691480961.0815945-UTR-H-paniculata_contig23644:2264..22881691480961.0815945-UTR-H-paniculata_contig23644:2264..2288Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23644 2265..2288 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23644.6389.1prot_H-paniculata_contig23644.6389.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23644 2097..2264 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23644.6389.1

>prot_H-paniculata_contig23644.6389.1 ID=prot_H-paniculata_contig23644.6389.1|Name=mRNA_H-paniculata_contig23644.6389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=56bp
MFKGVLAHINGYTKVPVASIREMLASRGGVIEAYNTSKCTHMICESLPYA
KIRELR
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mRNA from alignment at H-paniculata_contig23644:2097..2288-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23644.6389.1 ID=mRNA_H-paniculata_contig23644.6389.1|Name=mRNA_H-paniculata_contig23644.6389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig23644:2097..2288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCATCAGGGGCAGAGGGCACTATGTTCAAGGGAGTCCTGGCCCACAT
CAATGGATACACGAAGGTGCCCGTGGCATCGATTCGAGAGATGCTGGCCT
CCCGCGGCGGGGTGATCGAGGCGTACAACACCTCCAAGTGCACGCACATG
ATCTGCGAGTCCCTTCCGTACGCGAAGATAAGGGAGCTTAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23644:2097..2288-

>mRNA_H-paniculata_contig23644.6389.1 ID=mRNA_H-paniculata_contig23644.6389.1|Name=mRNA_H-paniculata_contig23644.6389.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=336bp|location=Sequence derived from alignment at H-paniculata_contig23644:2097..2288- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCAAGGGAGTCCTGGCCCACATCAATGGATACACGAAGGTGCCCGT
GGCATCGATTCGAGAGATGCTGGCCTCCCGCGGCGGGGTGATCGAGGCGT
ACAACACCTCCAAGTGCACGCACATGATCTGCGAGTCCCTTCCGTACGCG
AAGATAAGGGAGCTTAGAATGTTCAAGGGAGTCCTGGCCCACATCAATGG
ATACACGAAGGTGCCCGTGGCATCGATTCGAGAGATGCTGGCCTCCCGCG
GCGGGGTGATCGAGGCGTACAACACCTCCAAGTGCACGCACATGATCTGC
GAGTCCCTTCCGTACGCGAAGATAAGGGAGCTTAGA
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