prot_H-paniculata_contig23637.6386.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig23637.6386.1
Unique Name	prot_H-paniculata_contig23637.6386.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	60

Homology

[Close]

BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Match: A0A6H5KV84_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV84_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.630e-16
Identity = 42/58 (72.41%), Postives = 48/58 (82.76%), Query Frame = 0

Query:    1 MVKHLLAAGADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAGGAGRKAVDNQGR 58
            MVK LL+AGA   LPNLLGQTPLMYAAGFGTEE+VL+LL ALK     GR++VD+QGR
Sbjct: 1740 MVKRLLSAGAIAHLPNLLGQTPLMYAAGFGTEEVVLMLLEALKPE---GRRSVDSQGR 1794

[Close]

BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Match: D7FJN4_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN4_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.430e-15
Identity = 42/58 (72.41%), Postives = 47/58 (81.03%), Query Frame = 0

Query:    1 MVKHLLAAGADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAGGAGRKAVDNQGR 58
            MVK LL+AGA   LPNLLGQTPLMYAAGFGTEE+VL LL ALK     GR++VD+QGR
Sbjct: 1937 MVKRLLSAGAIAHLPNLLGQTPLMYAAGFGTEEVVLKLLEALKPG---GRRSVDSQGR 1991

[Close]

BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Match: UPI001472525D (ankyrin repeat domain-containing protein n=1 Tax=Corallococcus exiguus TaxID=83462 RepID=UPI001472525D)

HSP 1 Score: 47.0 bits (110), Expect = 4.440e-5
Identity = 24/57 (42.11%), Postives = 33/57 (57.89%), Query Frame = 0

Query:    1 MVKHLLAAGADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAGGAGRKAVDNQG 57
            +V+ LL AGADP LP+ LG+ P + AA +G  E+  LL +      G  R  + NQG
Sbjct:   11 LVRVLLEAGADPALPDNLGEAPFVTAAAYGHVEMCALLFSKAPDEKGLARTQLKNQG 67

[Close]

BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Match: A0A3A8TF46_9DELT (Ankyrin repeat domain-containing protein n=4 Tax=Corallococcus TaxID=83461 RepID=A0A3A8TF46_9DELT)

HSP 1 Score: 45.4 bits (106), Expect = 7.630e-5
Identity = 23/57 (40.35%), Postives = 32/57 (56.14%), Query Frame = 0

Query:    1 MVKHLLAAGADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAGGAGRKAVDNQG 57
            +V+ LL AGADP LP+ LG+ P + AA +G  E+  LL +   +  G G  A    G
Sbjct:   11 LVRVLLEAGADPALPDNLGEAPFVTAAAYGHVEMCALLFSKAPRREGPGAHAAQEPG 67

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A6H5KV84_9PHAE	5.630e-16	72.41	VPS9 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
D7FJN4_ECTSI	1.430e-15	72.41	VPS9 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
UPI001472525D	4.440e-5	42.11	ankyrin repeat domain-containing protein n=1 Tax=C...	[more]
A0A3A8TF46_9DELT	7.630e-5	40.35	Ankyrin repeat domain-containing protein n=4 Tax=C...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 1..58 e-value: 4.4E-11 score: 44.3
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 1..58
IPR020683	Ankyrin repeat-containing domain	PFAM	PF12796	Ank_2	coord: 1..57 e-value: 7.7E-7 score: 29.6
IPR020683	Ankyrin repeat-containing domain	PROSITE	PS50297	ANK_REP_REGION	coord: 1..39 score: 12.488
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 43..59
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 23..42
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..22
None	No IPR available	TMHMM	TMhelix		coord: 20..42

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig23637	contig	H-paniculata_contig23637:1410..1589 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig23637.6386.1	mRNA_H-paniculata_contig23637.6386.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig23637 1398..1589 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig23637.6386.1 ID=prot_H-paniculata_contig23637.6386.1|Name=mRNA_H-paniculata_contig23637.6386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MVKHLLAAGADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAGGAGR
KAVDNQGRW*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036770	Ankyrin_rpt-contain_sf
IPR020683	Ankyrin_rpt-contain_dom