mRNA_H-paniculata_contig23637.6386.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23637.6386.1
Unique NamemRNA_H-paniculata_contig23637.6386.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Match: A0A6H5KV84_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV84_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 3.340e-18
Identity = 45/62 (72.58%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 GHLGMVKHLLAAGADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAGGAGRKAVDNQGR 186
            GH GMVK LL+AGA   LPNLLGQTPLMYAAGFGTEE+VL+LL ALK     GR++VD+QGR
Sbjct: 1736 GHAGMVKRLLSAGAIAHLPNLLGQTPLMYAAGFGTEEVVLMLLEALKPE---GRRSVDSQGR 1794
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BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Match: D7FJN4_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN4_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 8.510e-18
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 GHLGMVKHLLAAGADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAGGAGRKAVDNQGR 186
            GH GMVK LL+AGA   LPNLLGQTPLMYAAGFGTEE+VL LL ALK     GR++VD+QGR
Sbjct: 1933 GHAGMVKRLLSAGAIAHLPNLLGQTPLMYAAGFGTEEVVLKLLEALKPG---GRRSVDSQGR 1991
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BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Match: A0A2P6V6V8_9CHLO (Serine threonine-phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V6V8_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 5.310e-6
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:    4 HLGMVKHLLAAGADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAG 150
            HLG+++HLLAAGAD    +  GQTPLMYA+ FG E  V +LL  L   G
Sbjct:  423 HLGVLRHLLAAGADAGQRSAAGQTPLMYASQFGHEGAVAMLLEHLAGQG 471
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BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Match: UPI001472525D (ankyrin repeat domain-containing protein n=1 Tax=Corallococcus exiguus TaxID=83462 RepID=UPI001472525D)

HSP 1 Score: 47.8 bits (112), Expect = 2.600e-5
Identity = 25/61 (40.98%), Postives = 34/61 (55.74%), Query Frame = 1 
Query:    1 GHLGMVKHLLAAGADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAGGAGRKAVDNQG 183
            G   +V+ LL AGADP LP+ LG+ P + AA +G  E+  LL +      G  R  + NQG
Sbjct:    7 GRADLVRVLLEAGADPALPDNLGEAPFVTAAAYGHVEMCALLFSKAPDEKGLARTQLKNQG 67
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BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Match: A0A7S4D7K5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D7K5_HETAK)

HSP 1 Score: 49.3 bits (116), Expect = 2.920e-5
Identity = 30/59 (50.85%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    1 GHLGMVKHLLAA-GADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAGGAGRKAVD 174
            GH  + + LL   G D  L N LGQTPLMY+A  G+EELVL+LL       GA R  VD
Sbjct:  174 GHADLARRLLTLPGVDADLANRLGQTPLMYSAAVGSEELVLMLLKF-----GAKRNLVD 227
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BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Match: A0A3A8TF46_9DELT (Ankyrin repeat domain-containing protein n=4 Tax=Corallococcus TaxID=83461 RepID=A0A3A8TF46_9DELT)

HSP 1 Score: 46.2 bits (108), Expect = 4.420e-5
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 1 
Query:    1 GHLGMVKHLLAAGADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAGGAGRKAVDNQG 183
            G   +V+ LL AGADP LP+ LG+ P + AA +G  E+  LL +   +  G G  A    G
Sbjct:    7 GRADLVRVLLEAGADPALPDNLGEAPFVTAAAYGHVEMCALLFSKAPRREGPGAHAAQEPG 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23637.6386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5KV84_9PHAE3.340e-1872.58VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FJN4_ECTSI8.510e-1872.58VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A2P6V6V8_9CHLO5.310e-655.10Serine threonine-phosphatase 6 regulatory ankyrin ... [more]
UPI001472525D2.600e-540.98ankyrin repeat domain-containing protein n=1 Tax=C... [more]
A0A7S4D7K5_HETAK2.920e-550.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A3A8TF46_9DELT4.420e-539.34Ankyrin repeat domain-containing protein n=4 Tax=C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23637contigH-paniculata_contig23637:1398..1589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.2
Seed ortholog evalue1.5e-12
Seed eggNOG ortholog2880.D7FJN4
Preferred nameMIB1
KEGG koko:K10645
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG0666@1,KOG2319@2759,KOG4177@2759
EC2.3.2.27
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons1
Model size192
Cds size180
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.4858947-UTR-H-paniculata_contig23637:1397..14091622929672.4858947-UTR-H-paniculata_contig23637:1397..1409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23637 1398..1409 +
1691480960.9980655-UTR-H-paniculata_contig23637:1397..14091691480960.9980655-UTR-H-paniculata_contig23637:1397..1409Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23637 1398..1409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.500945-CDS-H-paniculata_contig23637:1409..15891622929672.500945-CDS-H-paniculata_contig23637:1409..1589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23637 1410..1589 +
1691480961.0113394-CDS-H-paniculata_contig23637:1409..15891691480961.0113394-CDS-H-paniculata_contig23637:1409..1589Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23637 1410..1589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23637.6386.1prot_H-paniculata_contig23637.6386.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23637 1410..1589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23637.6386.1

>prot_H-paniculata_contig23637.6386.1 ID=prot_H-paniculata_contig23637.6386.1|Name=mRNA_H-paniculata_contig23637.6386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=60bp
MVKHLLAAGADPKLPNLLGQTPLMYAAGFGTEELVLLLLAALKKAGGAGR
KAVDNQGRW*
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mRNA from alignment at H-paniculata_contig23637:1398..1589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23637.6386.1 ID=mRNA_H-paniculata_contig23637.6386.1|Name=mRNA_H-paniculata_contig23637.6386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at H-paniculata_contig23637:1398..1589+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGACACCTCGGCATGGTGAAGCACTTACTGGCGGCGGGGGCAGACCCCAA
GTTGCCCAATCTTTTGGGCCAGACTCCCTTGATGTACGCGGCCGGATTCG
GTACCGAGGAGCTGGTTTTGCTGCTGCTGGCGGCGTTGAAGAAGGCGGGA
GGGGCGGGCAGGAAGGCGGTGGACAACCAGGGCAGGTGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23637:1398..1589+

>mRNA_H-paniculata_contig23637.6386.1 ID=mRNA_H-paniculata_contig23637.6386.1|Name=mRNA_H-paniculata_contig23637.6386.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at H-paniculata_contig23637:1398..1589+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGCACTTACTGGCGGCGGGGGCAGACCCCAAGTTGCCCAATCT
TTTGGGCCAGACTCCCTTGATGTACGCGGCCGGATTCGGTACCGAGGAGC
TGGTTTTGCTGCTGCTGGCGGCGTTGAAGAAGGCGGGAGGGGCGGGCAGG
AAGGCGGTGGACAACCAGGGCAGGTGGTGAATGGTGAAGCACTTACTGGC
GGCGGGGGCAGACCCCAAGTTGCCCAATCTTTTGGGCCAGACTCCCTTGA
TGTACGCGGCCGGATTCGGTACCGAGGAGCTGGTTTTGCTGCTGCTGGCG
GCGTTGAAGAAGGCGGGAGGGGCGGGCAGGAAGGCGGTGGACAACCAGGG
CAGGTGGTGA
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