mRNA_H-paniculata_contig23636.6385.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23636.6385.1
Unique NamemRNA_H-paniculata_contig23636.6385.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23636.6385.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23636contigH-paniculata_contig23636:219..1182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size436
Cds size420
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23636.6385.1prot_H-paniculata_contig23636.6385.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23636 219..1168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.4202707-CDS-H-paniculata_contig23636:218..4671622929672.4202707-CDS-H-paniculata_contig23636:218..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23636 219..467 -
1691480960.9607394-CDS-H-paniculata_contig23636:218..4671691480960.9607394-CDS-H-paniculata_contig23636:218..467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23636 219..467 -
1622929672.4357417-CDS-H-paniculata_contig23636:997..11681622929672.4357417-CDS-H-paniculata_contig23636:997..1168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23636 998..1168 -
1691480960.9741557-CDS-H-paniculata_contig23636:997..11681691480960.9741557-CDS-H-paniculata_contig23636:997..1168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23636 998..1168 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.4482865-UTR-H-paniculata_contig23636:1168..11821622929672.4482865-UTR-H-paniculata_contig23636:1168..1182Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23636 1169..1182 -
1691480960.9870439-UTR-H-paniculata_contig23636:1168..11821691480960.9870439-UTR-H-paniculata_contig23636:1168..1182Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23636 1169..1182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23636.6385.1

>prot_H-paniculata_contig23636.6385.1 ID=prot_H-paniculata_contig23636.6385.1|Name=mRNA_H-paniculata_contig23636.6385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MAMQQELTPGAAAADAERAAMAAAAAAAKAAAEARAAQEKAISKAAAAMK
AAAAHAELCPSGATAAGGLPGQQGASAAAASISARTASAGGGLGFGFGRG
LPPSRAGIGSALGPGPDLRPVGSGSGVSGRPAGGGGRRRG
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mRNA from alignment at H-paniculata_contig23636:219..1182-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23636.6385.1 ID=mRNA_H-paniculata_contig23636.6385.1|Name=mRNA_H-paniculata_contig23636.6385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=964bp|location=Sequence derived from alignment at H-paniculata_contig23636:219..1182- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGCGGGGCGGTGATGGCAATGCAGCAGGAATTGACGCCCGGGGCGGCA
GCGGCTGACGCTGAGAGGGCGGCGATGGCGGCGGCCGCGGCGGCGGCTAA
GGCAGCGGCCGAAGCGCGAGCGGCGCAAGAGAAGGCGATCTCGAAGGCAG
CCGCGGCGATGAAGGCGGCGGCGGCGCACGCTGAGGTGGGTGGGTCGGTG
GGTGGGTCGTGTTAAAATGGAGGTATGTTCGGCATGTTCAGGGTACTGGA
TTACTTGTTTAGTATTGACAAACTGCACAAAATTCATGCGGGGCGTAGTG
ATCATTCTAAATGGTGTTGCTGCAGTTCTCTCGATAGCTATAGATATGCA
GGGGGGTCGTGAGGAGGACGTGGAGAGGGTTATTCTCTCTTTCCCCTCTT
TAAGCTGATCTAACTATGGAGGTAACTACAGTAACACCATTTCGACTAAG
AAGAGATGAATTAAGATGTACGTGTGTCGTGTGTTTACCTAGCAGCTTTG
AGCTTTTTTTTCTTTTTATTATGCATCTGATGGTTGATTTCGAATGAGCC
GGGAAAGTTTCACGTGCATCGAGGAAAGGAAAATATAACAAAAATACGCA
TGTAATTTTTTTTTGGTCATCAATACATGGAATACCAGTTTTTAAAAAAT
CGGTTCCTTCCACAGTAAATCAACGGTATGTACATGTGCACGTTTGTTTG
CTCCCCAAACCATAGCTATGCCCAAGCGGCGCTACAGCAGCGGGTGGGCT
ACCAGGGCAGCAGGGGGCGTCCGCGGCGGCGGCGAGTATATCCGCGCGGA
CTGCTTCCGCTGGCGGCGGGTTAGGGTTTGGGTTCGGCCGAGGCCTGCCG
CCGAGTCGAGCGGGGATCGGATCTGCTCTGGGGCCGGGTCCGGATCTCCG
ACCAGTAGGTAGTGGATCTGGTGTCAGTGGTCGGCCGGCGGGGGGGGGGG
GACGGCGCCGCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig23636:219..1182-

>mRNA_H-paniculata_contig23636.6385.1 ID=mRNA_H-paniculata_contig23636.6385.1|Name=mRNA_H-paniculata_contig23636.6385.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig23636:219..1182- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAATGCAGCAGGAATTGACGCCCGGGGCGGCAGCGGCTGACGCTGA
GAGGGCGGCGATGGCGGCGGCCGCGGCGGCGGCTAAGGCAGCGGCCGAAG
CGCGAGCGGCGCAAGAGAAGGCGATCTCGAAGGCAGCCGCGGCGATGAAG
GCGGCGGCGGCGCACGCTGAGATGGCAATGCAGCAGGAATTGACGCCCGG
GGCGGCAGCGGCTGACGCTGAGAGGGCGGCGATGGCGGCGGCCGCGGCGG
CGGCTAAGGCAGCGGCCGAAGCGCGAGCGGCGCAAGAGAAGGCGATCTCG
AAGGCAGCCGCGGCGATGAAGGCGGCGGCGGCGCACGCTGAGCTATGCCC
AAGCGGCGCTACAGCAGCGGGTGGGCTACCAGGGCAGCAGGGGGCGTCCG
CGGCGGCGGCGAGTATATCCGCGCGGACTGCTTCCGCTGGCGGCGGGTTA
GGGTTTGGGTTCGGCCGAGGCCTGCCGCCGAGTCGAGCGGGGATCGGATC
TGCTCTGGGGCCGGGTCCGGATCTCCGACCAGTAGGTAGTGGATCTGGTG
TCAGTGGTCGGCCGGCGGGGGGGGGGGGACGGCGCCGCGGCCTATGCCCA
AGCGGCGCTACAGCAGCGGGTGGGCTACCAGGGCAGCAGGGGGCGTCCGC
GGCGGCGGCGAGTATATCCGCGCGGACTGCTTCCGCTGGCGGCGGGTTAG
GGTTTGGGTTCGGCCGAGGCCTGCCGCCGAGTCGAGCGGGGATCGGATCT
GCTCTGGGGCCGGGTCCGGATCTCCGACCAGTAGGTAGTGGATCTGGTGT
CAGTGGTCGGCCGGCGGGGGGGGGGGGACGGCGCCGCGGC
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