mRNA_H-paniculata_contig23623.6383.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23623.6383.1
Unique NamemRNA_H-paniculata_contig23623.6383.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23623.6383.1 vs. uniprot
Match: D7FS86_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS86_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.790e-26
Identity = 57/83 (68.67%), Postives = 69/83 (83.13%), Query Frame = 1 
Query:    1 DSFGSIFGDLFRGVVAVGGGGGILNDVVDFLENRVDGFYSDTSIEFEDLMSSNNQDEMKAELENTRLLLEQLRKRRQQLDLDR 249
            DSFG IF DL  G+ +VGGGGG+LNDVVDFLEN+VDGF SDTS+EFEDLM+S N  EMK ELENTR LLEQL+ + ++L +D+
Sbjct:  184 DSFGDIFRDLVGGIASVGGGGGVLNDVVDFLENQVDGFSSDTSLEFEDLMASRNLQEMKEELENTRFLLEQLKMKSRKLGIDK 266
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BLAST of mRNA_H-paniculata_contig23623.6383.1 vs. uniprot
Match: A0A7S1BW14_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BW14_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 6.240e-9
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    1 DSFGSIFGDLFRGVVAVGGGGGILNDVVDFLENRVDGFYS--DTSIEFEDLMSSNNQDEMKAELENTRLLLEQLRKRRQQLD 240
            DSFG+IFGDL R V +  GG G+ +D+VDFLEN VDGF S  D   + E L+      E++AELE+  +L++QL  + + +D
Sbjct:  242 DSFGAIFGDLLRSVSS--GGSGVFSDLVDFLENNVDGFKSGYDNDPDLERLLILGTLAEVRAELEDVEMLVQQLTTKAKDID 321
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BLAST of mRNA_H-paniculata_contig23623.6383.1 vs. uniprot
Match: A0A7S2RUY7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RUY7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.560e-8
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1 
Query:    1 DSFGSIFGDLFRG---------VVAVGGGGGILNDVVDFLENRVDGFYSDTSIEFEDLMSSNNQDEMKAELENTRLLLEQLRKR 225
            DSF  IFGDL +G         V    G  G+LND+V+FLE +VD F  ++  + E+L+ S + +E++AE+E TR LLE + KR
Sbjct:  177 DSFSQIFGDLLQGFVGGAVRSGVTGTMGARGVLNDLVEFLEAQVDDFSEESPEDLEELLESGSVEEIEAEIEATRTLLEAVEKR 260
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BLAST of mRNA_H-paniculata_contig23623.6383.1 vs. uniprot
Match: A0A1Z5KHN9_FISSO (J domain-containing protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KHN9_FISSO)

HSP 1 Score: 52.8 bits (125), Expect = 4.480e-6
Identity = 33/93 (35.48%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 DSFGSIFGDLFRGVVAVGGGGGILNDVVDFLENRVDGFYSDTSIEFEDLMSSNNQD-----------EMKAELENTRLLLEQLRKRRQQLDLD 246
            DSFG+IF DLF G  A    GG++ D ++FLE  VD + S +S  +  + + N+ D           ++  E++ T L+L+QL K+ Q++D+D
Sbjct:  137 DSFGAIFADLFAG--ASSSSGGVVKDFIEFLEQTVDAYSSTSSSSYSSVNNENDADLQFLLQVGSIRQVGDEMDETELVLQQLNKKMQRMDMD 227
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BLAST of mRNA_H-paniculata_contig23623.6383.1 vs. uniprot
Match: A0A1Z5JMW2_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMW2_FISSO)

HSP 1 Score: 50.8 bits (120), Expect = 2.120e-5
Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 1 
Query:    1 DSFGSIFGDLFRGVVAVGGGGGILNDVVDFLENRVDGFYSDTSIEFEDLMSSNNQDEMKA--------------ELENTRLLLEQLRKRRQQLDLD 246
            DSFG+IF DL  G       GG++ D ++FLE  VD + S +   +    S NN+D+ +               E++ T L+L+QL K+ Q++D+D
Sbjct:   93 DSFGAIFADLIAGASKASASGGVVKDFIEFLEQTVDAYSSSSXXXYS---SMNNEDDAELQFLLQVGSIRQVGDEMDETELVLQQLNKKMQRMDMD 185
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BLAST of mRNA_H-paniculata_contig23623.6383.1 vs. uniprot
Match: A0A6V1TPP7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TPP7_HETAK)

HSP 1 Score: 49.3 bits (116), Expect = 5.240e-5
Identity = 31/58 (53.45%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:   76 DVVDFLENRVDGFYSDTSIEFEDLMSSNNQDEMKAELENTRLLLEQLRKRRQQLDLDR 249
            D+V FLE  VDGF SDT++EFE+LM S N  E++ E+E   LL  QLR R   L  DR
Sbjct:    2 DLVSFLEKGVDGFSSDTTVEFEELMFSTNLKELELEMEAADLLAGQLRGRATGLARDR 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23623.6383.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FS86_ECTSI1.790e-2668.67Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A7S1BW14_9STRA6.240e-946.34Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A7S2RUY7_9STRA5.560e-842.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1Z5KHN9_FISSO4.480e-635.48J domain-containing protein n=1 Tax=Fistulifera so... [more]
A0A1Z5JMW2_FISSO2.120e-533.33Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A6V1TPP7_HETAK5.240e-553.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23623contigH-paniculata_contig23623:834..3598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.4
Seed ortholog evalue8.4e-22
Seed eggNOG ortholog2880.D7FS86
KEGG koko:K09510,ko:K09511
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-05_004970.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons3
Model size252
Cds size252
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23623.6383.1prot_H-paniculata_contig23623.6383.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23623 834..3598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929672.2441015-CDS-H-paniculata_contig23623:833..9021622929672.2441015-CDS-H-paniculata_contig23623:833..902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23623 834..902 -
1691480960.911057-CDS-H-paniculata_contig23623:833..9021691480960.911057-CDS-H-paniculata_contig23623:833..902Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23623 834..902 -
1622929672.2573915-CDS-H-paniculata_contig23623:1136..12171622929672.2573915-CDS-H-paniculata_contig23623:1136..1217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23623 1137..1217 -
1691480960.9246655-CDS-H-paniculata_contig23623:1136..12171691480960.9246655-CDS-H-paniculata_contig23623:1136..1217Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23623 1137..1217 -
1622929672.2685766-CDS-H-paniculata_contig23623:3496..35981622929672.2685766-CDS-H-paniculata_contig23623:3496..3598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23623 3497..3598 -
1691480960.9334116-CDS-H-paniculata_contig23623:3496..35981691480960.9334116-CDS-H-paniculata_contig23623:3496..3598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23623 3497..3598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23623.6383.1

>prot_H-paniculata_contig23623.6383.1 ID=prot_H-paniculata_contig23623.6383.1|Name=mRNA_H-paniculata_contig23623.6383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=84bp
DSFGSIFGDLFRGVVAVGGGGGILNDVVDFLENRVDGFYSDTSIEFEDLM
SSNNQDEMKAELENTRLLLEQLRKRRQQLDLDR*
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mRNA from alignment at H-paniculata_contig23623:834..3598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23623.6383.1 ID=mRNA_H-paniculata_contig23623.6383.1|Name=mRNA_H-paniculata_contig23623.6383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2765bp|location=Sequence derived from alignment at H-paniculata_contig23623:834..3598- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGTTTCGGGTCGATATTTGGAGACCTGTTTCGAGGGGTAGTCGCTGT
CGGCGGGGGCGGGGGGATCTTGAACGATGTCGTAGATTTCTTGGAGAATA
GGGTGAGATGTCGTAGATCGCTCGAAGAAAAACCCGGGGTGCATAAAAAG
GTCGTAGGTTTATTGGAGAACGTACGTTTTGTTTGGTTTATATTCTCCCA
GCCTAAGCCTGGTGCACTTTTTTTTTTTTTTTTTAATACGTATATATATA
TATATGTATAAATATATTTAGTTTTTTTTTTTTTTTTCTTGTGATTGTTA
GAACATTCGTTGGAATTTCGTGTATATGCCTGACTTGATATCGAGATTGC
TCGGAAAGTTTGCTTTGTTTGCGTTTTTTTTTTCTTGTTCCCCTTCTTTT
GAACTTGTATGTAAAGTAAGTAACGAATCAGTTTTATGGTACAAGATTAA
TAATTCTTGCTCTTTTTTTGTTTGTAATATTGTTGAGTCACATGAATACA
AGAGTTGATTTTTTTTTTTTTTTTTTTACTCGCCGCCATTAGGCAATTTC
TCTCCTATCAACCAAACGAATATATGCAGCAAAATCTTGCCCGCTCACGA
GAAAATCTGGTGTTCGTTTTTTCAAGATTGCAACGCCAAACTACCCCTCC
TACACATTTCGAACGTTTCCTCCACAACGCGGTCTGATCTGCCCCCCAAA
CAAGATCGTCGTGGAGAATCCGTCGTTGCTGCAGTGCCATCAAATCTGGA
TTTAAAAATAGTGTTAATTATCACATTTTTTTTTTTTTATCCCCGACGCG
GTGAAATTTGACGTATTTAGGACCCGCTGCTTGTTCGTGGTGATTTTTAC
TTTATACAGGCATACTGTAGCATCTATATATATATATATATCCAGGCCGT
CCGTCTCGTTCTTTTTTCAGTGCTTTTCGCATGAAAGCTGCACTTACAAT
GCCTTTTTCACGTGAACCAAAAAAAAAAAGAACCGGTTCGCGGTAAGGTT
GTGTCGCATTGTGCGATTCTACAACCGGGTCGCGACGGGTTCTGTCTGAT
CCAAGCGAATCGTCCATCGATTCTGTCGGATTTTTGCCGGTCGCGTGATA
AGCCCTAGTAGTATTAAACCTTTTTTGTGCCAACCCTGTTCCGCTCACCC
TGTTGTATATTTTATTTAGCCTTAACGTGTCGAGGTGGTATTAGGGCCCG
CACCGCGGTATGCGGTGTGCCAAAAGGCAGGCTTTTCGGGGCACGCCAAA
AAAGCTGGTTGGTAATTCGGGGGCTTGCATCCCGTCGAAGAGAATATGCG
GGCCGCCGAAATTATTGCGGGGGGGGGGGGGGGGGGGGGGTGACAAGCAT
CTTCAAGCTTCTGGATTATGACTTTCCACAAACTGAAATATATATGTATA
TATATAATAAGGGGGGGTCGGGGATGGGGGAACGCTGAATCAGCGCGACA
AATGGACTGAGCTTCACAAGCACAGGCTGCGGGAAAGAGAGGACCTGTAG
GGTACATGATGAACAAAGTGTTGTGAATGTTGTCACAGTATACTATCACT
TGCAACAGTATACTGCCCGTTTACTGGAACCGATTCAGCACTGGGAACTT
GACAAGAGGTGGGTGCGACAATACTGGGTATTGCCTGTTTGTGTCCCGTC
CTCCTCTTTCCGTTCTTGAGTCCTTTCCATTGTTAGTTAGTTAACTCCAA
TATTCTGGATAATAAAGACCGCTATTTTGGGGGTATATTATTTTGGTCGT
ACTGGTGGTACTGTACCTGTGACGATCTTTGAATGAATACGTTGAATGGC
GATACATCTCGATTTTATGTTCAACTCTGGCGACCTCCTGCCTGTGAGGG
GGGAGCTCGAGCCCGCTGACACCGGCGGTAGTCCCTGAAAGGCCTCGGGC
ACCACGCCGATTCGATCGGAAGAAGCCCGATGCCACCCACCTACCTGTAG
AGTCGTCCTGTTTTAATACTTGGTCAAACACAACGGTTGACAGTTCTTTT
GGTATTTTATGGTGTATACTTTGTGGTGCCCCGGCCCGAACAGGACCAAC
ACCGGAACTAACGGTAGCCCTAACACTAACCCCCACCCTAAACCCTTAGA
TACAGGTGTGTGTTGACAAATCTCGTGTCGGCGCCGCCAGGCCGCCCGGC
GCCGATTAGAGCAGAAACTGTTTTGGGGGACACAACTCAGAATCACCGAG
TACCAGAACGTCCTGATAACTTTCTTGGTGCACTATTATGCCGAGTTGGT
GTGTGTACCTCAACCATCGTATTCGACCAAGGTGGTGAATATTATGGCTA
CTGTACTGCTTACCCGTCGCTTCCTACTCAATAATTCAATGCTGCTTTGT
CTTTTTTCCGGTACATGGATGGAATCATCAGGTGGATGGATTTTATTCCG
ATACGTCCATCGAATTTGAGGACCTCATGTCGAGCAACAACCAGGACGAG
ATGAAAGCAGAGGTGAGGTTAAAACACCGTTCTTCGCGACTAGAGGAGAA
CGGTCGCGAGGAATTGGGGGGCATCGCATGGTACGGGAGGCGAAGGGACG
GAACGGAGCGGTATGGAACGGTACGGTACGGTACGGAATGGATCGGAGAG
GGTGTTACGTCTGTACTGGCTGTATGCTTTTTTTGCGTGCTCTCGATTTT
CACGGGGCCCTCTCTCGTGCGCGTTTTTACCGCTGTTTTTTGCCAGCTGG
AGAACACTCGGCTGTTGCTGGAACAGCTTCGGAAGAGGCGGCAACAGCTG
GACTTGGATAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig23623:834..3598-

>mRNA_H-paniculata_contig23623.6383.1 ID=mRNA_H-paniculata_contig23623.6383.1|Name=mRNA_H-paniculata_contig23623.6383.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at H-paniculata_contig23623:834..3598- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACAGTTTCGGGTCGATATTTGGAGACCTGTTTCGAGGGGTAGTCGCTGT
CGGCGGGGGCGGGGGGATCTTGAACGATGTCGTAGATTTCTTGGAGAATA
GGGACAGTTTCGGGTCGATATTTGGAGACCTGTTTCGAGGGGTAGTCGCT
GTCGGCGGGGGCGGGGGGATCTTGAACGATGTCGTAGATTTCTTGGAGAA
TAGGGTGGATGGATTTTATTCCGATACGTCCATCGAATTTGAGGACCTCA
TGTCGAGCAACAACCAGGACGAGATGAAAGCAGAGGTGGATGGATTTTAT
TCCGATACGTCCATCGAATTTGAGGACCTCATGTCGAGCAACAACCAGGA
CGAGATGAAAGCAGAGCTGGAGAACACTCGGCTGTTGCTGGAACAGCTTC
GGAAGAGGCGGCAACAGCTGGACTTGGATAGGTAACTGGAGAACACTCGG
CTGTTGCTGGAACAGCTTCGGAAGAGGCGGCAACAGCTGGACTTGGATAG
GTAA
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