prot_H-paniculata_contig23611.6381.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig23611.6381.1
Unique Nameprot_H-paniculata_contig23611.6381.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length184
Homology
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5KUJ6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.570e-11
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 0
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 115
            MSV   P    DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ SYR  +GRN +R
Sbjct:  320 MSVDPLPNDDRDPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSYRRPTGRNPHR 445          
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5KQN2_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 1.780e-10
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 0
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 115
            MSV   P    +PF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ SYR  +GRN +R
Sbjct:  251 MSVDPLPNDDREPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSYRRPTGRNPHR 376          
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5JGS1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 6.830e-10
Identity = 39/116 (33.62%), Postives = 63/116 (54.31%), Query Frame = 0
Query:    8 DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 115
            DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++    ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ SYR  +GRN +R
Sbjct:  105 DPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNPLRLYKGKCLNCLGEYHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSYRRPTGRNPHR 219          
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5KTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.230e-9
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = 0
Query:    8 DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR 108
            DPF   +  WP     + +V+  T++   T  DPPL+TPL+SA +R+D    ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ S R
Sbjct:   40 DPFLLHYSDWPLQGH-FQEVYNVTSQMALTKNDPPLFTPLVSAEERRDVLRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSTR 145          
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5L3A2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.700e-9
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 0
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 115
            MSV   P    DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC     S + C     N  G ++ D+    +++   + RW +R+ SYR  SGRN +R
Sbjct:  617 MSVDPLPNDDRDPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDRSFKSCNRGFVNATGSLSNDIKFRMEKDPTLWERWTKRMTSYRRPSGRNPHR 742          
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5K4H4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.410e-8
Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = 0
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYRSGR 111
            MSV   P    DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  G++N D+    +++   + RW++R+ S   GR
Sbjct:  320 MSVDPLPNDDRDPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGVLNNDIKFCMEKDPTLWGRWKKRMTSALVGR 439          
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.140e-7
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 0
Query:   38 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRS 106
            DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ S
Sbjct:  444 DPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWDRWKKRMTS 516          
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5KHG2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.140e-7
Identity = 35/103 (33.98%), Postives = 51/103 (49.51%), Query Frame = 0
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDLQRNEAAF 97
            MSV   P    DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D++     F
Sbjct:  117 MSVDPLPNDDRDPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCYRGFVNATGLLNNDIKEGAREF 218          
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5L698_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L698_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.360e-6
Identity = 33/97 (34.02%), Postives = 49/97 (50.52%), Query Frame = 0
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDLQ 91
            MSV   P    DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+  D++
Sbjct:  309 MSVDPLPNDDRDPFLLHYSDWPLQGH-FQEVYNVASDMAPTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGSVNATGLLYNDIK 404          
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5JMV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV1_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 2.110e-5
Identity = 34/114 (29.82%), Postives = 55/114 (48.25%), Query Frame = 0
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERI 104
            MSV   P    DP    +  WP     + +V+        T  DPPL+ P++SA +R++A   ++  CLNC    HS + C     N  GL+N D+    +++     RW++R+
Sbjct:  393 MSVDPLPHDDQDPLLLHYSDWPLQGH-FQEVYNVAREMALTKNDPPLFIPVVSAEERRNALRVYKGKCLNCLGEDHSFKTCNHGFVNATGLLNNDIKFCMEKDPTLRGRWKKRM 505          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5KUJ6_9PHAE5.570e-1134.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQN2_9PHAE1.780e-1033.86NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JGS1_9PHAE6.830e-1033.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KTX6_9PHAE1.230e-933.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3A2_9PHAE7.700e-933.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K4H4_9PHAE1.410e-832.23Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8W4_9PHAE2.140e-736.99Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KHG2_9PHAE2.140e-733.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L698_9PHAE3.360e-634.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JMV1_9PHAE2.110e-529.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 61..77
e-value: 0.0074
score: 24.4
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 62..77
score: 9.224
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 51..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23611contigH-paniculata_contig23611:1551..2102 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23611.6381.1mRNA_H-paniculata_contig23611.6381.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig23611 1551..2582 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig23611.6381.1 ID=prot_H-paniculata_contig23611.6381.1|Name=mRNA_H-paniculata_contig23611.6381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
MSVGENPDPFTAAFDAWPAAEETWDQVFVTTTRWETTDPPLWTPLLSAAD
RKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDLQRNEAAFRRW
QERIRSYRSGRNSNRHSRGRNSNNHHRRNHGNTHANTGDSSHHQHGARAS
SNAGTQVRQGQAQHDANPNNRKPGVFVTDRTDP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf