mRNA_H-paniculata_contig23611.6381.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23611.6381.1
Unique NamemRNA_H-paniculata_contig23611.6381.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5KUJ6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.100e-9
Identity = 44/127 (34.65%), Postives = 68/127 (53.54%), Query Frame = 1 
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 345
            MSV   P    DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ SYR  +GRN +R
Sbjct:  320 MSVDPLPNDDRDPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSYRRPTGRNPHR 445
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BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5KQN2_9PHAE (NADAR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN2_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 3.030e-9
Identity = 43/127 (33.86%), Postives = 68/127 (53.54%), Query Frame = 1 
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 345
            MSV   P    +PF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ SYR  +GRN +R
Sbjct:  251 MSVDPLPNDDREPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSYRRPTGRNPHR 376
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BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5JGS1_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGS1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.240e-8
Identity = 39/116 (33.62%), Postives = 63/116 (54.31%), Query Frame = 1 
Query:   22 DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 345
            DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++    ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ SYR  +GRN +R
Sbjct:  105 DPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNPLRLYKGKCLNCLGEYHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSYRRPTGRNPHR 219
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BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5KTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTX6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.120e-8
Identity = 36/107 (33.64%), Postives = 58/107 (54.21%), Query Frame = 1 
Query:   22 DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR 324
            DPF   +  WP     + +V+  T++   T  DPPL+TPL+SA +R+D    ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ S R
Sbjct:   40 DPFLLHYSDWPLQGH-FQEVYNVTSQMALTKNDPPLFTPLVSAEERRDVLRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWGRWKKRMTSTR 145
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BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5L3A2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A2_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.190e-7
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = 1 
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYR--SGRNSNR 345
            MSV   P    DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC     S + C     N  G ++ D+    +++   + RW +R+ SYR  SGRN +R
Sbjct:  617 MSVDPLPNDDRDPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDRSFKSCNRGFVNATGSLSNDIKFRMEKDPTLWERWTKRMTSYRRPSGRNPHR 742
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BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5K4H4_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H4_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 2.090e-7
Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = 1 
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRSYRSGR 333
            MSV   P    DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  G++N D+    +++   + RW++R+ S   GR
Sbjct:  320 MSVDPLPNDDRDPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGVLNNDIKFCMEKDPTLWGRWKKRMTSALVGR 439
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BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5K8W4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.610e-6
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 1 
Query:  112 DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDL----QRNEAAFRRWQERIRS 318
            DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D+    +++   + RW++R+ S
Sbjct:  444 DPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGFVNATGLLNNDIKFCMEKDPTLWDRWKKRMTS 516
[Close]
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5KHG2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG2_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.610e-6
Identity = 35/103 (33.98%), Postives = 51/103 (49.51%), Query Frame = 1 
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDLQRNEAAF 291
            MSV   P    DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+N D++     F
Sbjct:  117 MSVDPLPNDDRDPFLLHYSDWPLQGH-FQEVYNVASEMALTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCYRGFVNATGLLNNDIKEGAREF 218
[Close]
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Match: A0A6H5L698_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L698_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.480e-5
Identity = 33/97 (34.02%), Postives = 49/97 (50.52%), Query Frame = 1 
Query:    1 MSVGENP----DPFTAAFDAWPAAEETWDQVFVTTTRWETT--DPPLWTPLLSAADRKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDLQ 273
            MSV   P    DPF   +  WP     + +V+   +    T  DPPL+TPL+SA +R++A   ++  CLNC    HS + C     N  GL+  D++
Sbjct:  309 MSVDPLPNDDRDPFLLHYSDWPLQGH-FQEVYNVASDMAPTKNDPPLFTPLVSAEERRNALRLYKGKCLNCLGEDHSFKSCNRGSVNATGLLYNDIK 404
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23611.6381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KUJ6_9PHAE1.100e-934.65Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQN2_9PHAE3.030e-933.86NADAR domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JGS1_9PHAE1.240e-833.62Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KTX6_9PHAE2.120e-833.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3A2_9PHAE1.190e-733.07Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K4H4_9PHAE2.090e-732.23Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K8W4_9PHAE2.610e-636.99Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KHG2_9PHAE2.610e-633.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L698_9PHAE3.480e-534.02Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23611contigH-paniculata_contig23611:1551..2582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1032
Cds size552
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.6946466-CDS-H-paniculata_contig23611:1550..21021622929671.6946466-CDS-H-paniculata_contig23611:1550..2102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23611 1551..2102 +
1691480960.740798-CDS-H-paniculata_contig23611:1550..21021691480960.740798-CDS-H-paniculata_contig23611:1550..2102Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23611 1551..2102 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929671.7133584-UTR-H-paniculata_contig23611:2102..25821622929671.7133584-UTR-H-paniculata_contig23611:2102..2582Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23611 2103..2582 +
1691480960.752758-UTR-H-paniculata_contig23611:2102..25821691480960.752758-UTR-H-paniculata_contig23611:2102..2582Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23611 2103..2582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23611.6381.1prot_H-paniculata_contig23611.6381.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23611 1551..2102 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23611.6381.1

>prot_H-paniculata_contig23611.6381.1 ID=prot_H-paniculata_contig23611.6381.1|Name=mRNA_H-paniculata_contig23611.6381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=184bp
MSVGENPDPFTAAFDAWPAAEETWDQVFVTTTRWETTDPPLWTPLLSAAD
RKDAFSKHRNTCLNCGTTGHSIRECTESCRNVFGLINPDLQRNEAAFRRW
QERIRSYRSGRNSNRHSRGRNSNNHHRRNHGNTHANTGDSSHHQHGARAS
SNAGTQVRQGQAQHDANPNNRKPGVFVTDRTDP*
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mRNA from alignment at H-paniculata_contig23611:1551..2582+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23611.6381.1 ID=mRNA_H-paniculata_contig23611.6381.1|Name=mRNA_H-paniculata_contig23611.6381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1032bp|location=Sequence derived from alignment at H-paniculata_contig23611:1551..2582+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGTTGGTGAAAACCCCGATCCCTTCACGGCTGCGTTCGACGCGTG
GCCTGCTGCAGAAGAAACATGGGATCAGGTTTTTGTTACAACGACACGTT
GGGAAACTACTGACCCTCCTCTATGGACCCCACTATTATCTGCAGCTGAT
CGCAAAGATGCTTTTTCTAAACACCGTAACACCTGCCTTAATTGCGGTAC
CACTGGCCACAGCATTCGTGAATGCACTGAATCTTGCCGTAATGTGTTTG
GACTCATTAACCCTGACCTCCAACGCAATGAAGCTGCATTTCGCCGTTGG
CAGGAAAGGATCCGCTCTTACCGCTCGGGCCGTAATTCGAACCGGCACTC
GCGTGGTAGGAATTCCAATAACCACCATCGACGAAACCACGGTAATACCC
ATGCCAACACCGGTGATTCCTCTCACCACCAGCACGGAGCTCGCGCCTCC
TCCAACGCCGGCACACAGGTTCGTCAGGGTCAAGCTCAACATGATGCCAA
CCCCAACAACCGCAAGCCTGGCGTCTTTGTCACGGACAGGACCGACCCCT
GATATCCCAAGGATGGCGTCCCTCCGTCTCCTGCGCCTATCCAAGCACTC
TTGGAGACCTCTTTAATTGCACCGCTTTCTATAGATGTCAAGGCAAGTAC
TGACACTACTGATGAATTGCGGGCAGATGGGGTATTTTCCCCCGACTCTC
GTCCTTTTCGCTTTTGGCGTTTGCCTCATGGCCGCCAGGCTGTTCCATCG
GACTTTCCAAGAACTAACTCGGAGGTTTTTGTGGCCGACACCGGCGTCTC
TGAAACGCCATGTCCGCTTCTTCCCTCTCAGCGGGACCATTTAATTCGTA
TCCGCAATCACACTTTAACAAATTCACAGCCAGAGGACTTCAAAGCGGAC
GGCACTGCACCAGTTACCCCATGTCCGTTTCTTTCCTCAGCGCGGAAAAG
CCGCAATCTCCTGCACCCTGGAGCGGTATCTGTGCCGGAGGTTGGTCCCT
CCAGCCCAGGTGCACCTTTGAGGTGCGGGTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig23611:1551..2582+

>mRNA_H-paniculata_contig23611.6381.1 ID=mRNA_H-paniculata_contig23611.6381.1|Name=mRNA_H-paniculata_contig23611.6381.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1104bp|location=Sequence derived from alignment at H-paniculata_contig23611:1551..2582+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTGTTGGTGAAAACCCCGATCCCTTCACGGCTGCGTTCGACGCGTG
GCCTGCTGCAGAAGAAACATGGGATCAGGTTTTTGTTACAACGACACGTT
GGGAAACTACTGACCCTCCTCTATGGACCCCACTATTATCTGCAGCTGAT
CGCAAAGATGCTTTTTCTAAACACCGTAACACCTGCCTTAATTGCGGTAC
CACTGGCCACAGCATTCGTGAATGCACTGAATCTTGCCGTAATGTGTTTG
GACTCATTAACCCTGACCTCCAACGCAATGAAGCTGCATTTCGCCGTTGG
CAGGAAAGGATCCGCTCTTACCGCTCGGGCCGTAATTCGAACCGGCACTC
GCGTGGTAGGAATTCCAATAACCACCATCGACGAAACCACGGTAATACCC
ATGCCAACACCGGTGATTCCTCTCACCACCAGCACGGAGCTCGCGCCTCC
TCCAACGCCGGCACACAGGTTCGTCAGGGTCAAGCTCAACATGATGCCAA
CCCCAACAACCGCAAGCCTGGCGTCTTTGTCACGGACAGGACCGACCCCT
GAATGTCTGTTGGTGAAAACCCCGATCCCTTCACGGCTGCGTTCGACGCG
TGGCCTGCTGCAGAAGAAACATGGGATCAGGTTTTTGTTACAACGACACG
TTGGGAAACTACTGACCCTCCTCTATGGACCCCACTATTATCTGCAGCTG
ATCGCAAAGATGCTTTTTCTAAACACCGTAACACCTGCCTTAATTGCGGT
ACCACTGGCCACAGCATTCGTGAATGCACTGAATCTTGCCGTAATGTGTT
TGGACTCATTAACCCTGACCTCCAACGCAATGAAGCTGCATTTCGCCGTT
GGCAGGAAAGGATCCGCTCTTACCGCTCGGGCCGTAATTCGAACCGGCAC
TCGCGTGGTAGGAATTCCAATAACCACCATCGACGAAACCACGGTAATAC
CCATGCCAACACCGGTGATTCCTCTCACCACCAGCACGGAGCTCGCGCCT
CCTCCAACGCCGGCACACAGGTTCGTCAGGGTCAAGCTCAACATGATGCC
AACCCCAACAACCGCAAGCCTGGCGTCTTTGTCACGGACAGGACCGACCC
CTGA
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