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Homology
BLAST of mRNA_H-paniculata_contig23590.6371.1 vs. uniprot
Match: D8LKI1_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKI1_ECTSI) HSP 1 Score: 95.5 bits (236), Expect = 2.010e-20 Identity = 51/87 (58.62%), Postives = 65/87 (74.71%), Query Frame = 1
Query: 73 SSRSVPTMCSLRVTPDGSKVQVGVRSNESVILEYALDDW--HGPGHLRVGHEALSGSRVIDAP-QGSGGLFAVLGPDRSVQIRSWRM 324
+S VP++ SLRVTPD +KVQVG+ ++ +ILEY L+ H LRVG+EAL G RV+DAP G GGLFAV+GPDR +QIRSWR+
Sbjct: 701 TSAPVPSIRSLRVTPDQTKVQVGI--SKGIILEYELEGQASHEQAWLRVGYEALIGRRVVDAPVHGDGGLFAVMGPDRVIQIRSWRV 785
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 93.6 |
| Seed ortholog evalue | 6.8e-17 |
| Seed eggNOG ortholog | 2880.D8LKI1 |
| KEGG ko | ko:K10380 |
| KEGG Pathway | ko04624,ko05205,map04624,map05205 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | response to abiotic stimulus |
| EggNOG OGs | COG0666@1,KOG4177@2759 |
| COG Functional cat. | G |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04812 |
| Exons | 3 |
| Model size | 368 |
| Cds size | 360 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23590.6371.1 >prot_H-paniculata_contig23590.6371.1 ID=prot_H-paniculata_contig23590.6371.1|Name=mRNA_H-paniculata_contig23590.6371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MVLLRGGHRGGGGDKMGLPLSMSSRSVPTMCSLRVTPDGSKVQVGVRSNE
SVILEYALDDWHGPGHLRVGHEALSGSRVIDAPQGSGGLFAVLGPDRSVQ
IRSWRMTTGGDGKGGSGSLS back to topmRNA from alignment at H-paniculata_contig23590:577..2953- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig23590.6371.1 ID=mRNA_H-paniculata_contig23590.6371.1|Name=mRNA_H-paniculata_contig23590.6371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2377bp|location=Sequence derived from alignment at H-paniculata_contig23590:577..2953- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCGTATGGTTCTGCTACGGGGGGGGCACCGCGGCGGTGGGGGAGACAA
GATGGGGTTACCGTTATCGATGTCATCGCGCAGTGTTCCGACGATGTGCA
GCTTGAGGGTAACGCCCGACGGCAGCAAGGTGTGTGTGTACTGAAGGGCT
GATCAGAGCCCATATCCCTCGGTGCACACCGTTTTGCGAACTGAGCCCCC
CTTCAACCCTATGTTTACCTCCAAATCTCCCCCCCCCCTAAAAACCATAC
CCCATTTTCACGTAAAGTAAAATCATGTGTACATAAATGTGTACATACAT
GTTTTTGTAGGTAAGTTCCATTTCCTTGAGATTTTTTTGGCATATTTTTC
TGGCTTGTGTGTCAATTTTTGGAAATTGTGATCGATCGTTGGTGTACTCG
TTTGTGTGTATCTTTCTTTTGTTTTCCCGTAATCGTGCCTGGTCTGTGTT
GTGCTAACTTTGTGCTGGAGAGAGAAAAGCGGTAGATGCGGGCGCCGGGG
TGGAGACCGCAGAGAGGGTGGAGGCTTCCAGCAAACTGGAGTTTGTACAA
CACTTTATCAGCAACATTAGATTGATAAGGGGTGGTTTTGTATGTGGGCA
ACGGCCAGGAAACAGGACGACTATCCGGGGGAGGTTTTATCCGGTATTAT
GGGCAAATCGGTAACCGGTTACTGATTTTCTTGTAGCCGGTCACAATTTT
CTAGTTGGTGTCCTACCGACAATGAGCAATACCTCGCTTTTTGAGGCGTG
CTACTTAATGCCTTGTGCATACAAGTGTACTAGGCTGTACCTGAACATTC
TCCTGGCTTTCAAGCTGTCTATCTATGTTGACCGGTAGATGTGTGTGGGG
GGGAGGGCATGCTTGTTGTCTGTTCGCTTACTTACGGTCACGATCTAGAA
GCCCCAGTGATGAATGTTTGGTCTTGGATGCGTATCTCGAGTGGATTGAA
ACGCCCTGGCACGAGACTTTCTCGGGTGCGAAAGCACCGTTTCACTGCTA
CAGCGTTATTCCAGGTCTAGGTTGTCCATTTCTCGTACCCCAGCCCACAC
CTTGCTCTGCCTATTGCCCTCCACGCCATCTGGCTTGCACGAACGAACGC
AGGTTCAAGTAGGTGTGAGGAGTAACGAGAGCGTTATCCTAGAGTACGCG
CTCGACGACTGGCACGGACCTGGACACTTGAGGGTGGGCCACGAGGCACT
TAGGTGGGGATTGAAACAGAAGAGGGAGAGGGAGGCTGGCAGGCAGGCAC
CAGCATTTCTCGAGAATTCTGTAGCGGTAGCTGCTGCGTGTGTGGCGTCC
TGGTATGCGTGCGTGATGGTACCCTCAGACACAGCACTAACAGGAGCAGC
AGCCTCCCACAAGTCGTGGCATGATGTAAGAAGAAAAGATTGAGCGTTGG
ACTTCCTGGAAAATGTTGGGCCTTCCGTCAAGGTTTGTTTTCTTCTCCGG
AGTTGAAGGATTGAAAGAGGGTTGGTACCGAGAATATGGCACTGTTGAAT
GTCTTCACTTCACGAATAACACCGCTAGATCATCGGATCAAAGCACATAA
AAGGGGACACGTACTTAAAAAAAAACTTTGTTAGCGTGGGTAACTGTTGT
GGCGAATGAAGGTAAATAAAAACCCACCGATGCATGCGTCCCGGAACTAA
GTAGCGTTCATGCTGCGGAGAACAAAAGGCCTCTACCGTCAACGCGCCTC
GTGCAGGCAAGTAAATTTGCCTCCTGAGGAACTTACTCCGATGCCTCCAG
TCTGTCCACCGCGGACTTCGAGTTGAAGCCGAGTCCATCCATACACACTT
CTGGGTTGCGTGAGGAGTGGCGTCAGTCACAGTAATAGCCTCATCGTAAA
CATGAAAATGTGTGAACTATTTATTTTGTGCCTCTGTTTCGGTCACCTAA
CTGCAGCAACGCATACATGAATTAGATAATAGTCATAGTCACCGCCTTCC
GTCGCCCTCCTCATAGTGCTTCACTCTCCTACATTTGGACACGAAGCCCC
CCCCCCCCCGCACTGTTAACGTCATCATCTCTGATGAGTGTGCAGCTAGC
TTCAAAGTACAAGCTACATACGCACCGTCAGCACAACACGTATACACTAT
AAGTTAATACGTGAGGTAGTACAGAATTAAAGGATTTAGACACAGGTGGT
TGAATCCGTTGTATGGTTTTGTCGTTCTCCAGTTTCCTGCTCCCCTTTCA
TCAGTCCCCATTGTCGACCCCCGATAATACCATTGCTGCAGCGGGAGCAG
GGTGATCGACGCTCCTCAAGGGTCGGGAGGACTATTCGCCGTCTTGGGCC
CCGATCGTTCCGTGCAGATACGGTCGTGGCGTATGACCACTGGTGGCGAC
GGCAAGGGTGGAAGTGGGTCTCTTTCC back to topCoding sequence (CDS) from alignment at H-paniculata_contig23590:577..2953- >mRNA_H-paniculata_contig23590.6371.1 ID=mRNA_H-paniculata_contig23590.6371.1|Name=mRNA_H-paniculata_contig23590.6371.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig23590:577..2953- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCTGCTACGGGGGGGGCACCGCGGCGGTGGGGGAGACAAGATGGG
GTTACCGTTATCGATGTCATCGCGCAGTGTTCCGACGATGTGCAGCTTGA
GGGTAACGCCCGACGGCAGCAAGATGGTTCTGCTACGGGGGGGGCACCGC
GGCGGTGGGGGAGACAAGATGGGGTTACCGTTATCGATGTCATCGCGCAG
TGTTCCGACGATGTGCAGCTTGAGGGTAACGCCCGACGGCAGCAAGGTTC
AAGTAGGTGTGAGGAGTAACGAGAGCGTTATCCTAGAGTACGCGCTCGAC
GACTGGCACGGACCTGGACACTTGAGGGTGGGCCACGAGGCACTTAGGTT
CAAGTAGGTGTGAGGAGTAACGAGAGCGTTATCCTAGAGTACGCGCTCGA
CGACTGGCACGGACCTGGACACTTGAGGGTGGGCCACGAGGCACTTAGCG
GGAGCAGGGTGATCGACGCTCCTCAAGGGTCGGGAGGACTATTCGCCGTC
TTGGGCCCCGATCGTTCCGTGCAGATACGGTCGTGGCGTATGACCACTGG
TGGCGACGGCAAGGGTGGAAGTGGGTCTCTTTCCCGGGAGCAGGGTGATC
GACGCTCCTCAAGGGTCGGGAGGACTATTCGCCGTCTTGGGCCCCGATCG
TTCCGTGCAGATACGGTCGTGGCGTATGACCACTGGTGGCGACGGCAAGG
GTGGAAGTGGGTCTCTTTCC back to top
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