mRNA_H-paniculata_contig2358.6369.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2358.6369.1
Unique NamemRNA_H-paniculata_contig2358.6369.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2358.6369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2358contigH-paniculata_contig2358:932..3617 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size977
Cds size909
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2358.6369.1prot_H-paniculata_contig2358.6369.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2358 932..3551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929670.2805467-CDS-H-paniculata_contig2358:931..18081622929670.2805467-CDS-H-paniculata_contig2358:931..1808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2358 932..1808 -
1691480960.0880702-CDS-H-paniculata_contig2358:931..18081691480960.0880702-CDS-H-paniculata_contig2358:931..1808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2358 932..1808 -
1622929670.299966-CDS-H-paniculata_contig2358:3519..35511622929670.299966-CDS-H-paniculata_contig2358:3519..3551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2358 3520..3551 -
1691480960.097652-CDS-H-paniculata_contig2358:3519..35511691480960.097652-CDS-H-paniculata_contig2358:3519..3551Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2358 3520..3551 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929670.3260112-UTR-H-paniculata_contig2358:3551..36171622929670.3260112-UTR-H-paniculata_contig2358:3551..3617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2358 3552..3617 -
1691480960.107153-UTR-H-paniculata_contig2358:3551..36171691480960.107153-UTR-H-paniculata_contig2358:3551..3617Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2358 3552..3617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2358.6369.1

>prot_H-paniculata_contig2358.6369.1 ID=prot_H-paniculata_contig2358.6369.1|Name=mRNA_H-paniculata_contig2358.6369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=303bp
MPRRKPVNPIRRDVIGSGIGGPLPPRPPSPTPPPPEEAEKDCDRDSDSDD
DSDGGENEGGKGSAVKPANSKPKRRKLSPAGKNTALHAAFSSMLQGMLQG
GGEGEEETIERADGDGRVLGLEGRRPTGRVLSSPPTGNGSGTAGSNSPSA
AVTDTTSRRLVKGKGKSSSRKGGNKKKSKILMRLSSRRTDIAVSAEKDND
DDSDGLDGLEAAGETLLGHDDSVKRWRGRNSGKEKYKGKGRRGGTRSGDG
SSGGGDVGGSSKSRNDGVTAKEDEEGNENEDQEEDEGTLVASSSSAKKRK
KLY
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mRNA from alignment at H-paniculata_contig2358:932..3617-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2358.6369.1 ID=mRNA_H-paniculata_contig2358.6369.1|Name=mRNA_H-paniculata_contig2358.6369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2686bp|location=Sequence derived from alignment at H-paniculata_contig2358:932..3617- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGTGCATGAGTGCACGGGGTGTACTGGTCTTGACTGTGGTGTACCTT
GTGCGTTAATTCGAGGATGCCTAGGAGAAAGCCCGTGAATCCAATCAGGC
GAGTGTTATACATGTCTTGAGGATTGTTGGGCGCACGGTAATCATGGTCA
TTAGGAATGTAGTCAAAGTTGGGCAAGCGATGTGTTGTATCCTATTCGAA
GAACATCCCGTGAAACGGTTACAATGCACCGCCGACTGTGTTAAAACTAC
AAGCGAAGACTACTCTTAACTTTGTACAACTTTAAGCACTTCATGATATA
TGTAGTGATCTCTGTCATCATCGTTCTCTCCCAGGTCGCTTAGTCCATGT
ACATGTTCTACCTATAACAGGCGTATTCGAGTTGAAGTTTTGCCCGTATG
ATGTATAACCCCCCCCCCCCCCCCCTCAAGCCGTAATGGTTTATCATGAA
GTGTTTCAAACGCGATTTTCTCCAGACCAGAGCCGGAGACCCTTCAACAT
TGAGAAGAGCTTGTTAATCGATACATATAGACGAAAACATGTCCAACGGC
ACGATTTTTTCAGTGCTAATGCTCAAGGTACTCACTGTCTGTTGCAACCT
GGTCGTTATCAAGAAAAATGAAAACTGTTGTCACCGGCAGGAAATTATAC
ATTAGACAGACGCGTCCGCCCTCCAGACAGCCGTCTGTCCTATAGGAAAT
AGCCTGCGACATGGACAGGCGGTACAACTTTGAAGTCTATTCAAGCTGTA
TAGTGTTACTGTCGGGCAGACCTCCGGACCTTAAGAGCAAGCATTCTATT
CAGAACGCTTGCTGGTCTTCAGAGTATGATCTGCGCTGCAGAGATATATC
CGGGTACTGCCCAGCAATGTTACATTGCTCCTTTTCGGTTATTCCAAGGC
ATCGCGCACAGCAGCTGTTACTGTGCTCGCATGTGCTCTGCCAACGCAGC
AAAGTCAGATGAAGCCGATTTCGTGAGTGTCCCTTGTAGGGATGATTCGA
ATAACTGCTTTCAAAACGCCAGGACAAGTTCCCGGTTTGGCGCAGCAAAG
GTACAGAACCCGCCAAAACAAACACCCCTAGGAAGAACGGGAAAACCCAA
GCTTTTTCGAAACGAAAACCTGCACCTTCAGTATTTGTGGCCAATCCAGG
TGAATTTGGCTTTCCGGTAGATGCACCCACTATGGAGAGAATGAGTACAC
GGCGATTACCGCTTCTTTCCGCGGGGGAAGGGTGGTGGGGTCCCTGATTG
AGAACACGGTGCGTAGAGGTCGTAAAGCCACGTGTACCACGGGTGACTCG
CAGCGGCCCTGCGTGCTCCCCAACGTGGCCGGACCATATCATGGTATACC
TTATTTTGGCCATGAACTAATCTATTTTACTACTACTAGAGCCACGGCTA
TCTATGCCCATGCAGCCTGTGTTTTATCCTCTACTCCCACGCACAACGCC
ATGCTCACACTGGGTGGGGACTCTCTACTCTCTCAAGTTGCTCGTAACTT
GCACATTCGCAAGCACGCGCGTTGTCCGCAAAGATTTCGCTTTTTAGAAA
TTACGGAGAACAGAAAAGCTGTTCCGATACGACGACGACGATAACCTTAC
CTACAAACAACTCCCTTTTGGAACTGAAATACTCTCGTCAGCATCGTCTA
AAGCTAGCTTGTCTCGCATTCTGTAACCGTGTAGTCATCATTGTTCGTGA
TTGGTCGTTGGTAAATATTTTCTTGTGGTCGCTACGAGGTCCAGTTGGGC
TTCTACAAGGGGTAAATCGCTAACTGTTTGTCAATCAATCACATGCACGT
CCCACGCAGGCGGGACGTGATCGGCTCCGGCATCGGCGGCCCCCTCCCCC
CTCGGCCACCGAGCCCCACTCCTCCACCACCAGAAGAAGCTGAGAAAGAC
TGCGACCGCGACAGCGACAGCGATGATGATAGCGATGGAGGCGAAAATGA
AGGCGGCAAGGGCTCCGCCGTCAAGCCGGCGAACAGCAAGCCAAAGCGGC
GAAAGCTGTCTCCAGCCGGGAAAAACACCGCCTTACATGCGGCGTTCAGC
TCGATGCTGCAGGGCATGCTCCAAGGTGGAGGTGAAGGAGAAGAAGAAAC
AATAGAAAGGGCGGACGGTGACGGGCGTGTTCTAGGGTTGGAGGGAAGAC
GACCAACAGGAAGGGTGTTATCGTCGCCACCAACCGGGAATGGTAGTGGT
ACTGCTGGGTCTAATAGTCCTAGTGCTGCTGTCACGGACACAACAAGCAG
AAGACTCGTCAAAGGCAAAGGTAAAAGTAGCAGCAGAAAAGGTGGCAACA
AGAAGAAAAGCAAGATCTTGATGAGGCTAAGTAGCAGGCGGACGGATATT
GCTGTGAGTGCAGAGAAGGACAATGACGATGACAGTGACGGATTAGACGG
TTTGGAGGCGGCGGGAGAAACTCTGCTTGGGCATGACGATAGTGTGAAGA
GATGGAGGGGGAGAAATAGCGGAAAGGAGAAATATAAAGGGAAGGGAAGG
AGGGGTGGCACCCGCAGCGGGGACGGTAGTAGTGGTGGTGGTGATGTTGG
TGGGAGCTCCAAAAGTAGAAACGACGGCGTTACAGCCAAGGAAGATGAAG
AGGGCAACGAAAACGAGGACCAAGAAGAGGACGAGGGGACCCTCGTAGCG
AGTTCTTCGTCAGCCAAGAAACGCAAGAAATTGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig2358:932..3617-

>mRNA_H-paniculata_contig2358.6369.1 ID=mRNA_H-paniculata_contig2358.6369.1|Name=mRNA_H-paniculata_contig2358.6369.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1818bp|location=Sequence derived from alignment at H-paniculata_contig2358:932..3617- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTAGGAGAAAGCCCGTGAATCCAATCAGATGCCTAGGAGAAAGCCC
GTGAATCCAATCAGGCGGGACGTGATCGGCTCCGGCATCGGCGGCCCCCT
CCCCCCTCGGCCACCGAGCCCCACTCCTCCACCACCAGAAGAAGCTGAGA
AAGACTGCGACCGCGACAGCGACAGCGATGATGATAGCGATGGAGGCGAA
AATGAAGGCGGCAAGGGCTCCGCCGTCAAGCCGGCGAACAGCAAGCCAAA
GCGGCGAAAGCTGTCTCCAGCCGGGAAAAACACCGCCTTACATGCGGCGT
TCAGCTCGATGCTGCAGGGCATGCTCCAAGGTGGAGGTGAAGGAGAAGAA
GAAACAATAGAAAGGGCGGACGGTGACGGGCGTGTTCTAGGGTTGGAGGG
AAGACGACCAACAGGAAGGGTGTTATCGTCGCCACCAACCGGGAATGGTA
GTGGTACTGCTGGGTCTAATAGTCCTAGTGCTGCTGTCACGGACACAACA
AGCAGAAGACTCGTCAAAGGCAAAGGTAAAAGTAGCAGCAGAAAAGGTGG
CAACAAGAAGAAAAGCAAGATCTTGATGAGGCTAAGTAGCAGGCGGACGG
ATATTGCTGTGAGTGCAGAGAAGGACAATGACGATGACAGTGACGGATTA
GACGGTTTGGAGGCGGCGGGAGAAACTCTGCTTGGGCATGACGATAGTGT
GAAGAGATGGAGGGGGAGAAATAGCGGAAAGGAGAAATATAAAGGGAAGG
GAAGGAGGGGTGGCACCCGCAGCGGGGACGGTAGTAGTGGTGGTGGTGAT
GTTGGTGGGAGCTCCAAAAGTAGAAACGACGGCGTTACAGCCAAGGAAGA
TGAAGAGGGCAACGAAAACGAGGACCAAGAAGAGGACGAGGGGACCCTCG
TAGCGAGTTCTTCGTCAGCCAAGAAACGCAAGAAATTGTACGCGGGACGT
GATCGGCTCCGGCATCGGCGGCCCCCTCCCCCCTCGGCCACCGAGCCCCA
CTCCTCCACCACCAGAAGAAGCTGAGAAAGACTGCGACCGCGACAGCGAC
AGCGATGATGATAGCGATGGAGGCGAAAATGAAGGCGGCAAGGGCTCCGC
CGTCAAGCCGGCGAACAGCAAGCCAAAGCGGCGAAAGCTGTCTCCAGCCG
GGAAAAACACCGCCTTACATGCGGCGTTCAGCTCGATGCTGCAGGGCATG
CTCCAAGGTGGAGGTGAAGGAGAAGAAGAAACAATAGAAAGGGCGGACGG
TGACGGGCGTGTTCTAGGGTTGGAGGGAAGACGACCAACAGGAAGGGTGT
TATCGTCGCCACCAACCGGGAATGGTAGTGGTACTGCTGGGTCTAATAGT
CCTAGTGCTGCTGTCACGGACACAACAAGCAGAAGACTCGTCAAAGGCAA
AGGTAAAAGTAGCAGCAGAAAAGGTGGCAACAAGAAGAAAAGCAAGATCT
TGATGAGGCTAAGTAGCAGGCGGACGGATATTGCTGTGAGTGCAGAGAAG
GACAATGACGATGACAGTGACGGATTAGACGGTTTGGAGGCGGCGGGAGA
AACTCTGCTTGGGCATGACGATAGTGTGAAGAGATGGAGGGGGAGAAATA
GCGGAAAGGAGAAATATAAAGGGAAGGGAAGGAGGGGTGGCACCCGCAGC
GGGGACGGTAGTAGTGGTGGTGGTGATGTTGGTGGGAGCTCCAAAAGTAG
AAACGACGGCGTTACAGCCAAGGAAGATGAAGAGGGCAACGAAAACGAGG
ACCAAGAAGAGGACGAGGGGACCCTCGTAGCGAGTTCTTCGTCAGCCAAG
AAACGCAAGAAATTGTAC
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