mRNA_H-paniculata_contig23576.6367.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23576.6367.1
Unique NamemRNA_H-paniculata_contig23576.6367.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23576.6367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23576contigH-paniculata_contig23576:1819..2624 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size256
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23576.6367.1prot_H-paniculata_contig23576.6367.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23576 1850..2624 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929670.077782-UTR-H-paniculata_contig23576:1818..18491622929670.077782-UTR-H-paniculata_contig23576:1818..1849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23576 1819..1849 +
1691480960.0264697-UTR-H-paniculata_contig23576:1818..18491691480960.0264697-UTR-H-paniculata_contig23576:1818..1849Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig23576 1819..1849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929670.0998423-CDS-H-paniculata_contig23576:1849..18791622929670.0998423-CDS-H-paniculata_contig23576:1849..1879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23576 1850..1879 +
1691480960.036939-CDS-H-paniculata_contig23576:1849..18791691480960.036939-CDS-H-paniculata_contig23576:1849..1879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23576 1850..1879 +
1622929670.1215663-CDS-H-paniculata_contig23576:2429..26241622929670.1215663-CDS-H-paniculata_contig23576:2429..2624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23576 2430..2624 +
1691480960.0462716-CDS-H-paniculata_contig23576:2429..26241691480960.0462716-CDS-H-paniculata_contig23576:2429..2624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23576 2430..2624 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23576.6367.1

>prot_H-paniculata_contig23576.6367.1 ID=prot_H-paniculata_contig23576.6367.1|Name=mRNA_H-paniculata_contig23576.6367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=75bp
MTEVAAVGQQVLIMMEGTPLCSLCGHKCSKLKDGPRGRFLSTLFPFCNFP
KIGNRDSEINSVCAVSHVCCTWSK*
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mRNA from alignment at H-paniculata_contig23576:1819..2624+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23576.6367.1 ID=mRNA_H-paniculata_contig23576.6367.1|Name=mRNA_H-paniculata_contig23576.6367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=806bp|location=Sequence derived from alignment at H-paniculata_contig23576:1819..2624+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAACGATAGGACGATAAAACACTCACAGAATGACTGAGGTCGCGGCAG
TAGGCCAACAGGTGGGTGCTGGTGTTGCTGGGTGCACGTACAGCTATCCC
TGTCTGTGTATGTAGGTGAGATTCTTACGTCCATCATTAACTGACGGATT
CGGTCGATAAAAGTAAACCCAGAACCTCTACAGGCTACAGGAAGTAGTCC
ATCCAAGAAGTAGTACAAACAAGCAATAATACTCCACCCACGTCAGATTG
TTTTGACATGCACGTGCAGCCCTTTATCTGCTCTCTGCGTTGGGTTTTGG
GAATTGGCTAACTTTAGTTGGTGGTGTCTCACCATGAGGGCATTTGCCTA
CCCAACTTCGTCAAGTTCATATTCGTTCTTGAATCGATGTTGATGATACG
GAGGCCAGATGTGTTCCAGGAGATATCAACTCTTGACTGTTGCTATCGCA
ACTGTCAAGTATTGCTGCTGTAGCTTCCTGAAACGTGACTAAACGGACGG
AGAGTCATGACCGGCCCTGCGGGAAGTTTCGAATCGATTGAATGAGTTTT
CACATGCACCAAACTCAAGGGGCGTGTAATGCACCGGATTTACAATCGCT
CTCGAAACCAGGTGTTGATTATGATGGAGGGCACCCCGCTGTGCTCTCTC
TGTGGGCACAAATGTTCGAAGTTAAAGGATGGACCAAGAGGACGTTTTTT
GTCCACGTTGTTTCCTTTTTGCAATTTTCCGAAAATTGGAAATCGTGACA
GCGAGATAAACTCTGTCTGTGCCGTATCGCATGTCTGTTGCACTTGGTCA
AAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig23576:1819..2624+

>mRNA_H-paniculata_contig23576.6367.1 ID=mRNA_H-paniculata_contig23576.6367.1|Name=mRNA_H-paniculata_contig23576.6367.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=450bp|location=Sequence derived from alignment at H-paniculata_contig23576:1819..2624+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTGAGGTCGCGGCAGTAGGCCAACAGATGACTGAGGTCGCGGCAGT
AGGCCAACAGGTGTTGATTATGATGGAGGGCACCCCGCTGTGCTCTCTCT
GTGGGCACAAATGTTCGAAGTTAAAGGATGGACCAAGAGGACGTTTTTTG
TCCACGTTGTTTCCTTTTTGCAATTTTCCGAAAATTGGAAATCGTGACAG
CGAGATAAACTCTGTCTGTGCCGTATCGCATGTCTGTTGCACTTGGTCAA
AGTGAGTGTTGATTATGATGGAGGGCACCCCGCTGTGCTCTCTCTGTGGG
CACAAATGTTCGAAGTTAAAGGATGGACCAAGAGGACGTTTTTTGTCCAC
GTTGTTTCCTTTTTGCAATTTTCCGAAAATTGGAAATCGTGACAGCGAGA
TAAACTCTGTCTGTGCCGTATCGCATGTCTGTTGCACTTGGTCAAAGTGA
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