prot_H-paniculata_contig23563.6366.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig23563.6366.1
Unique Name	prot_H-paniculata_contig23563.6366.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	133

Homology

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BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: D8LGU0_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGU0_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 7.700e-69
Identity = 113/131 (86.26%), Postives = 125/131 (95.42%), Query Frame = 0

Query:    2 TDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGTA 132
            ++F+PLRVDYMERFSAAGMTSGGYNKRDG+ASD+ETLVSRLMDRP+RP MHPGWFHETQLLSWVLS+D  HPPVPLAITAASAALALS VPLVRAIAGVTVGMD+EGEL++NPE+ VAAMS LNLT+AGTA
Sbjct:   72 SNFSPLRVDYMERFSAAGMTSGGYNKRDGRASDKETLVSRLMDRPLRPAMHPGWFHETQLLSWVLSYDTVHPPVPLAITAASAALALSNVPLVRAIAGVTVGMDSEGELVVNPEISVAAMSPLNLTIAGTA 202

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BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A835ZC49_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC49_9STRA)

HSP 1 Score: 184 bits (467), Expect = 5.300e-52
Identity = 88/130 (67.69%), Postives = 109/130 (83.85%), Query Frame = 0

Query:    3 DFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGTA 132
            DFAPL+VDY ERFS+AGMTSGGYNKRDG+AS++E LVSRL+DRP+RP +  GW HETQL++WV+S+D   PP PLAIT+ASA+L LS VP+ RA+AGVTVGMD EG  ++NP+  +A  SRL L+LAGTA
Sbjct:   16 DFAPLKVDYQERFSSAGMTSGGYNKRDGRASEKEVLVSRLIDRPLRPMIAQGWTHETQLITWVVSYDGSRPPEPLAITSASASLCLSQVPMRRAVAGVTVGMDGEGNYVVNPDKAIADESRLTLSLAGTA 145

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BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A1Y1HVU8_KLENI (Polyribonucleotide nucleotidyltransferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HVU8_KLENI)

HSP 1 Score: 154 bits (390), Expect = 4.580e-41
Identity = 78/132 (59.09%), Postives = 98/132 (74.24%), Query Frame = 0

Query:    1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGTA 132
            P DFAPL V Y ERFSAAG T+GG+ KR+G+  D E LVSRL+DRP+RP    G+ +ETQ+L WVLS+D +H P PLAI AA AALA+S +P  +A+AGV VGM  +GE IINP     AMS+L++ +AGTA
Sbjct:   90 PADFAPLSVHYQERFSAAGRTTGGFIKREGRPRDNEVLVSRLVDRPLRPMCDKGFNYETQVLVWVLSYDTEHMPEPLAILAAGAALAISDIPTKKAVAGVRVGMSEDGEYIINPTKAQLAMSKLDMLVAGTA 221

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BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: UPI001F5FE2A8 (probable polyribonucleotide nucleotidyltransferase 1, chloroplastic n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5FE2A8)

HSP 1 Score: 146 bits (368), Expect = 5.380e-41
Identity = 76/131 (58.02%), Postives = 95/131 (72.52%), Query Frame = 0

Query:    1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 131
            P+DF PL V Y ERFSAAG TSGG+ KR+GK  D E L+ RL+DRP+RPTM  G++HETQ+LSWVLS+D  H P  LA+TAA  A+ALS VP+ +AIAGV VG+  + + I+NP       S L+L LAGT
Sbjct:  131 PSDFFPLSVHYQERFSAAGRTSGGFFKREGKTRDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPMSKAIAGVRVGLVGD-KYIVNPTTKEMEHSELDLLLAGT 260

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BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A8J9S8_CHLRE (Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J9S8_CHLRE)

HSP 1 Score: 152 bits (384), Expect = 8.380e-41
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 0

Query:    4 FAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 131
            F PL V+Y ERFSAAG TSGG+ KRDG+  D E LVSRL+DRPIRP    GW ++TQ+L WVLS+D  + P PLAITAA+AAL +S +PL +A+AGV VGM A+G  IINP ++    SRL+L +AGT
Sbjct:  137 FTPLTVNYAERFSAAGRTSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAITAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGT 264

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BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A1S4CDB9_TOBAC (polyribonucleotide nucleotidyltransferase 1, chloroplastic-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4CDB9_TOBAC)

HSP 1 Score: 146 bits (368), Expect = 1.420e-40
Identity = 74/131 (56.49%), Postives = 95/131 (72.52%), Query Frame = 0

Query:    1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 131
            P+DF PL V Y ERFSAAG TSGG+ KR+G+  D E L+ RL+DRP+RPTM  G++HETQ+LSWVLS+D  HPP  LA+TAA  A+ALS VP    IAGV +G+  + + I+NP +     S+L+L LAGT
Sbjct:  138 PSDFFPLSVHYQERFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQVLSWVLSYDGLHPPDALAVTAAGIAMALSEVPSSEVIAGVRIGLIGD-KFIVNPTIQEMENSKLDLLLAGT 267

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BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A803LS92_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LS92_CHEQI)

HSP 1 Score: 146 bits (368), Expect = 1.560e-40
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 0

Query:    1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 131
            P+DF PL V+Y ERFSAAG TSGG+ KR+G+  D E LV RL+DRP+RPTM  G++HETQ+LSWVLS+D  HPP  LA+TAA  A+ALS +P  + IAGV VG+   G+ I+NP  +    S L+L +AGT
Sbjct:  132 PSDFFPLSVNYQERFSAAGRTSGGFFKREGRPKDHEVLVCRLIDRPLRPTMVKGFYHETQVLSWVLSYDGLHPPDALAVTAAGIAVALSELPHTKTIAGVRVGL-VGGKYIVNPTTNEIEDSELDLVVAGT 261

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BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A2R6X203_MARPO (Polyribonucleotide nucleotidyltransferase n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X203_MARPO)

HSP 1 Score: 152 bits (385), Expect = 2.290e-40
Identity = 75/131 (57.25%), Postives = 100/131 (76.34%), Query Frame = 0

Query:    1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 131
            P+DF PL V+Y ERFSAAG TSGG+ KR+G+  D E LV RL+DRPIRP +  G+ HETQ+LSWVLS+D  H P PLAITAA AALALS +P+ + +AGV VG+  +G+ +INP +   ++S+L++ +AGT
Sbjct:  152 PSDFVPLTVNYQERFSAAGRTSGGFIKREGRTRDHEVLVCRLIDRPIRPMIAKGFNHETQILSWVLSYDGLHTPEPLAITAAGAALALSDIPIAKPVAGVRVGL-IDGQFVINPTVQEMSLSKLDMIVAGT 281

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BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A2K3DTU2_CHLRE (Polyribonucleotide nucleotidyltransferase n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DTU2_CHLRE)

HSP 1 Score: 152 bits (384), Expect = 2.610e-40
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 0

Query:    4 FAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 131
            F PL V+Y ERFSAAG TSGG+ KRDG+  D E LVSRL+DRPIRP    GW ++TQ+L WVLS+D  + P PLAITAA+AAL +S +PL +A+AGV VGM A+G  IINP ++    SRL+L +AGT
Sbjct:  137 FTPLTVNYAERFSAAGRTSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAITAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGT 264

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BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A7J7KV96_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7KV96_9MAGN)

HSP 1 Score: 148 bits (373), Expect = 2.660e-40
Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 0

Query:    1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 131
            P+DF PL V+Y ERFSAAG TSGG+ KR+G+A D E L+ RL+DRP+RPTM  G++HETQ+LSWVLS+D  H P  LAITAA  A+ALS VP  +++AGV +GM  + + I+NP       S L+L LAGT
Sbjct:  106 PSDFFPLSVNYQERFSAAGRTSGGFFKREGRAKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHSPDSLAITAAGIAVALSEVPNTKSVAGVRIGM-VDDKFIVNPTTKQMEQSELDLVLAGT 235

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LGU0_ECTSI	7.700e-69	86.26	Polyribonucleotide nucleotidyltransferase n=2 Tax=...	[more]
A0A835ZC49_9STRA	5.300e-52	67.69	Polyribonucleotide nucleotidyltransferase n=1 Tax=...	[more]
A0A1Y1HVU8_KLENI	4.580e-41	59.09	Polyribonucleotide nucleotidyltransferase n=1 Tax=...	[more]
UPI001F5FE2A8	5.380e-41	58.02	probable polyribonucleotide nucleotidyltransferase...	[more]
A8J9S8_CHLRE	8.380e-41	60.16	Polyribonucleotide nucleotidyltransferase (Fragmen...	[more]
A0A1S4CDB9_TOBAC	1.420e-40	56.49	polyribonucleotide nucleotidyltransferase 1, chlor...	[more]
A0A803LS92_CHEQI	1.560e-40	57.25	Uncharacterized protein n=1 Tax=Chenopodium quinoa...	[more]
A0A2R6X203_MARPO	2.290e-40	57.25	Polyribonucleotide nucleotidyltransferase n=1 Tax=...	[more]
A0A2K3DTU2_CHLRE	2.610e-40	60.16	Polyribonucleotide nucleotidyltransferase n=3 Tax=...	[more]
A0A7J7KV96_9MAGN	2.660e-40	57.25	Uncharacterized protein n=1 Tax=Kingdonia uniflora...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 18..92 e-value: 6.6E-7 score: 29.9
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 1..132 e-value: 1.1E-37 score: 131.5
None	No IPR available	PANTHER	PTHR11252:SF0	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE 1, MITOCHONDRIAL	coord: 1..131
IPR012162	Polyribonucleotide nucleotidyltransferase	PANTHER	PTHR11252	POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE	coord: 1..131
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 86..131
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 2..92

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig23563	contig	H-paniculata_contig23563:2362..3790 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig23563.6366.1	mRNA_H-paniculata_contig23563.6366.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig23563 2362..3790 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig23563.6366.1 ID=prot_H-paniculata_contig23563.6366.1|Name=mRNA_H-paniculata_contig23563.6366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPT
MHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGV
TVGMDAEGELIINPEMDVAAMSRLNLTLAGTA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001247	ExoRNase_PH_dom1
IPR027408	PNPase/RNase_PH_dom_sf
IPR012162	PNPase
IPR036345	ExoRNase_PH_dom2_sf
IPR020568	Ribosomal_S5_D2-typ_fold