mRNA_H-paniculata_contig23563.6366.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: D8LGU0_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGU0_ECTSI) HSP 1 Score: 231 bits (588), Expect = 7.700e-69 Identity = 113/131 (86.26%), Postives = 125/131 (95.42%), Query Frame = 1
Query: 4 TDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGTA 396
++F+PLRVDYMERFSAAGMTSGGYNKRDG+ASD+ETLVSRLMDRP+RP MHPGWFHETQLLSWVLS+D HPPVPLAITAASAALALS VPLVRAIAGVTVGMD+EGEL++NPE+ VAAMS LNLT+AGTA
Sbjct: 72 SNFSPLRVDYMERFSAAGMTSGGYNKRDGRASDKETLVSRLMDRPLRPAMHPGWFHETQLLSWVLSYDTVHPPVPLAITAASAALALSNVPLVRAIAGVTVGMDSEGELVVNPEISVAAMSPLNLTIAGTA 202
BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A835ZC49_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC49_9STRA) HSP 1 Score: 184 bits (467), Expect = 5.300e-52 Identity = 88/130 (67.69%), Postives = 109/130 (83.85%), Query Frame = 1
Query: 7 DFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGTA 396
DFAPL+VDY ERFS+AGMTSGGYNKRDG+AS++E LVSRL+DRP+RP + GW HETQL++WV+S+D PP PLAIT+ASA+L LS VP+ RA+AGVTVGMD EG ++NP+ +A SRL L+LAGTA
Sbjct: 16 DFAPLKVDYQERFSSAGMTSGGYNKRDGRASEKEVLVSRLIDRPLRPMIAQGWTHETQLITWVVSYDGSRPPEPLAITSASASLCLSQVPMRRAVAGVTVGMDGEGNYVVNPDKAIADESRLTLSLAGTA 145
BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A1Y1HVU8_KLENI (Polyribonucleotide nucleotidyltransferase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HVU8_KLENI) HSP 1 Score: 154 bits (390), Expect = 4.580e-41 Identity = 78/132 (59.09%), Postives = 98/132 (74.24%), Query Frame = 1
Query: 1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGTA 396
P DFAPL V Y ERFSAAG T+GG+ KR+G+ D E LVSRL+DRP+RP G+ +ETQ+L WVLS+D +H P PLAI AA AALA+S +P +A+AGV VGM +GE IINP AMS+L++ +AGTA
Sbjct: 90 PADFAPLSVHYQERFSAAGRTTGGFIKREGRPRDNEVLVSRLVDRPLRPMCDKGFNYETQVLVWVLSYDTEHMPEPLAILAAGAALAISDIPTKKAVAGVRVGMSEDGEYIINPTKAQLAMSKLDMLVAGTA 221
BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: UPI001F5FE2A8 (probable polyribonucleotide nucleotidyltransferase 1, chloroplastic n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5FE2A8) HSP 1 Score: 146 bits (368), Expect = 5.380e-41 Identity = 76/131 (58.02%), Postives = 95/131 (72.52%), Query Frame = 1
Query: 1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 393
P+DF PL V Y ERFSAAG TSGG+ KR+GK D E L+ RL+DRP+RPTM G++HETQ+LSWVLS+D H P LA+TAA A+ALS VP+ +AIAGV VG+ + + I+NP S L+L LAGT
Sbjct: 131 PSDFFPLSVHYQERFSAAGRTSGGFFKREGKTRDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHSPDSLAVTAAGIAVALSEVPMSKAIAGVRVGLVGD-KYIVNPTTKEMEHSELDLLLAGT 260
BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A8J9S8_CHLRE (Polyribonucleotide nucleotidyltransferase (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J9S8_CHLRE) HSP 1 Score: 152 bits (384), Expect = 8.380e-41 Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 1
Query: 10 FAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 393
F PL V+Y ERFSAAG TSGG+ KRDG+ D E LVSRL+DRPIRP GW ++TQ+L WVLS+D + P PLAITAA+AAL +S +PL +A+AGV VGM A+G IINP ++ SRL+L +AGT
Sbjct: 137 FTPLTVNYAERFSAAGRTSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAITAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGT 264
BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A1S4CDB9_TOBAC (polyribonucleotide nucleotidyltransferase 1, chloroplastic-like n=1 Tax=Nicotiana tabacum TaxID=4097 RepID=A0A1S4CDB9_TOBAC) HSP 1 Score: 146 bits (368), Expect = 1.420e-40 Identity = 74/131 (56.49%), Postives = 95/131 (72.52%), Query Frame = 1
Query: 1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 393
P+DF PL V Y ERFSAAG TSGG+ KR+G+ D E L+ RL+DRP+RPTM G++HETQ+LSWVLS+D HPP LA+TAA A+ALS VP IAGV +G+ + + I+NP + S+L+L LAGT
Sbjct: 138 PSDFFPLSVHYQERFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMLKGFYHETQVLSWVLSYDGLHPPDALAVTAAGIAMALSEVPSSEVIAGVRIGLIGD-KFIVNPTIQEMENSKLDLLLAGT 267
BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A803LS92_CHEQI (Uncharacterized protein n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803LS92_CHEQI) HSP 1 Score: 146 bits (368), Expect = 1.560e-40 Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 1
Query: 1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 393
P+DF PL V+Y ERFSAAG TSGG+ KR+G+ D E LV RL+DRP+RPTM G++HETQ+LSWVLS+D HPP LA+TAA A+ALS +P + IAGV VG+ G+ I+NP + S L+L +AGT
Sbjct: 132 PSDFFPLSVNYQERFSAAGRTSGGFFKREGRPKDHEVLVCRLIDRPLRPTMVKGFYHETQVLSWVLSYDGLHPPDALAVTAAGIAVALSELPHTKTIAGVRVGL-VGGKYIVNPTTNEIEDSELDLVVAGT 261
BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A2R6X203_MARPO (Polyribonucleotide nucleotidyltransferase n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X203_MARPO) HSP 1 Score: 152 bits (385), Expect = 2.290e-40 Identity = 75/131 (57.25%), Postives = 100/131 (76.34%), Query Frame = 1
Query: 1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 393
P+DF PL V+Y ERFSAAG TSGG+ KR+G+ D E LV RL+DRPIRP + G+ HETQ+LSWVLS+D H P PLAITAA AALALS +P+ + +AGV VG+ +G+ +INP + ++S+L++ +AGT
Sbjct: 152 PSDFVPLTVNYQERFSAAGRTSGGFIKREGRTRDHEVLVCRLIDRPIRPMIAKGFNHETQILSWVLSYDGLHTPEPLAITAAGAALALSDIPIAKPVAGVRVGL-IDGQFVINPTVQEMSLSKLDMIVAGT 281
BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A2K3DTU2_CHLRE (Polyribonucleotide nucleotidyltransferase n=3 Tax=Chlamydomonas TaxID=3052 RepID=A0A2K3DTU2_CHLRE) HSP 1 Score: 152 bits (384), Expect = 2.610e-40 Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = 1
Query: 10 FAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 393
F PL V+Y ERFSAAG TSGG+ KRDG+ D E LVSRL+DRPIRP GW ++TQ+L WVLS+D + P PLAITAA+AAL +S +PL +A+AGV VGM A+G IINP ++ SRL+L +AGT
Sbjct: 137 FTPLTVNYAERFSAAGRTSGGFVKRDGRPRDAEVLVSRLVDRPIRPMFAKGWANDTQILEWVLSYDGVNDPEPLAITAAAAALLISDIPLKKAVAGVRVGMSADGGFIINPTVEEMETSRLDLMVAGT 264
BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Match: A0A7J7KV96_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7KV96_9MAGN) HSP 1 Score: 148 bits (373), Expect = 2.660e-40 Identity = 75/131 (57.25%), Postives = 96/131 (73.28%), Query Frame = 1
Query: 1 PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTMHPGWFHETQLLSWVLSFDQKHPPVPLAITAASAALALSPVPLVRAIAGVTVGMDAEGELIINPEMDVAAMSRLNLTLAGT 393
P+DF PL V+Y ERFSAAG TSGG+ KR+G+A D E L+ RL+DRP+RPTM G++HETQ+LSWVLS+D H P LAITAA A+ALS VP +++AGV +GM + + I+NP S L+L LAGT
Sbjct: 106 PSDFFPLSVNYQERFSAAGRTSGGFFKREGRAKDHEVLICRLIDRPLRPTMLKGFYHETQILSWVLSYDGLHSPDSLAITAAGIAVALSEVPNTKSVAGVRIGM-VDDKFIVNPTTKQMEQSELDLVLAGT 235 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23563.6366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23563.6366.1 >prot_H-paniculata_contig23563.6366.1 ID=prot_H-paniculata_contig23563.6366.1|Name=mRNA_H-paniculata_contig23563.6366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp PTDFAPLRVDYMERFSAAGMTSGGYNKRDGKASDQETLVSRLMDRPIRPTback to top mRNA from alignment at H-paniculata_contig23563:2362..3790+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23563.6366.1 ID=mRNA_H-paniculata_contig23563.6366.1|Name=mRNA_H-paniculata_contig23563.6366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1429bp|location=Sequence derived from alignment at H-paniculata_contig23563:2362..3790+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23563:2362..3790+ >mRNA_H-paniculata_contig23563.6366.1 ID=mRNA_H-paniculata_contig23563.6366.1|Name=mRNA_H-paniculata_contig23563.6366.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig23563:2362..3790+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |