mRNA_H-paniculata_contig23560.6365.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23560.6365.1
Unique NamemRNA_H-paniculata_contig23560.6365.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23560.6365.1 vs. uniprot
Match: A0A6H5GTD8_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GTD8_9HEMI)

HSP 1 Score: 106 bits (264), Expect = 2.770e-22
Identity = 81/278 (29.14%), Postives = 135/278 (48.56%), Query Frame = 1
Query:    4 WNSDTGAIDHMRSDATTFEDYTPALPGTMCEIANGTFVPVAGWRRLVRQAIQPGGKSRVAVLNTVAHVPELGRNLISTRQAKDTWGKSFIYSANTASLGLGKDESLICNVSASSGLYEVEAVRGAAETAKALTAKKSLKRDVMDIHRLLGHASEQITRDTA---KTGGLVLTG--EWGACKGC-------------STAKAHRFARLYVDLGGPMRVISLGGSSYVMIIVDDYSRFQAVEFIKKKSDATAALQSYMAEYITPKGLKIGAIRTDNSREF 783
            W  D+G   HM ++A  F     +   T   +AN     V G +  V+  +   GK +V  L+   HVPEL  NL+S  +  D  G +  +++ +A +     E+L+     ++GLY V+ V G++ + + ++ K   K  + + H+  GH +E   +      K  G+ L    +   C  C             S+  + +   +++DL GPMRV S GG+ Y + ++DDYSR+  + F+KKKSD  A  + +     T KG KI  I++DN +EF
Sbjct:  267 WCIDSGCTSHMCNEAGRFSSLDTS-DHTRVNLANNDSTDVNG-KGTVKMCVSVNGKKQVMSLHNTLHVPELRSNLLSVGKITDQ-GLTVTFTSTSAEIKNRSGETLM-RAKRTNGLYLVDEVSGSSNSKEEISLKCESK--IENWHQRFGHLNESDLKSLQAGKKVKGIDLRSNEKLSDCTICLQGKMTQTPFPKKSSRTSQKLDLIHMDLCGPMRVQSKGGAKYFLTLIDDYSRWCEIRFLKKKSDVFAEFKKFKNLVETQKGRKIKCIQSDNGKEF 538          
BLAST of mRNA_H-paniculata_contig23560.6365.1 vs. uniprot
Match: A0A6H5G7E3_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5G7E3_9HEMI)

HSP 1 Score: 103 bits (258), Expect = 1.650e-21
Identity = 79/278 (28.42%), Postives = 134/278 (48.20%), Query Frame = 1
Query:    4 WNSDTGAIDHMRSDATTFEDYTPALPGTMCEIANGTFVPVAGWRRLVRQAIQPGGKSRVAVLNTVAHVPELGRNLISTRQAKDTWGKSFIYSANTASLGLGKDESLICNVSASSGLYEVEAVRGAAETAKALTAKKSLKRDVMDIHRLLGHASEQITRDT-----AKTGGLVLTGEWGACKGC-------------STAKAHRFARLYVDLGGPMRVISLGGSSYVMIIVDDYSRFQAVEFIKKKSDATAALQSYMAEYITPKGLKIGAIRTDNSREF 783
            W  D+G   HM ++A  F     +   T   +AN     V G +  V+  +   GK +V  L+   HVPEL  NL+S  +  D  G +  +++++A +     E+L+     ++GLY V+ V G++ + + ++ K   K  + + H+  GH +E   +        K   L    +   C  C             S+  + +   +++DL GPM+V S GG+ Y + ++DDYSR+  + F+KKKSD  A  + +     T KG KI  I++DN +EF
Sbjct:  120 WCIDSGCTSHMCNEAGRFSSVDTS-DHTRVNLANNDSTDVNG-KGTVKMCVSVNGKKQVMSLHNTLHVPELRSNLLSVGKITDQ-GLTVTFTSSSAEIKNRSGETLM-RAKRTNGLYLVDEVSGSSHSKEEISLKCESK--IENWHQRFGHLNESDLKSLQAGKKVKAIDLRSNEKLSDCTICLQGKMTQTPFPKKSSRTSQKLDLIHMDLCGPMQVQSKGGAKYFLTLIDDYSRWCEIRFVKKKSDVFAEFKKFKNLVETQKGRKIKYIQSDNGKEF 391          
BLAST of mRNA_H-paniculata_contig23560.6365.1 vs. uniprot
Match: A0A6A4XZ99_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A6A4XZ99_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 5.920e-18
Identity = 69/280 (24.64%), Postives = 125/280 (44.64%), Query Frame = 1
Query:    4 WNSDTGAIDHMRSDATTFEDYTPALPGTMCEIANGTFVPVAGWRRLVRQAIQPGGKSRVAVLNTVAHVPELGRNLISTRQAKDTWGKSFIYSANTASLGLGKDESLICNVSASSGLYEVEAVRGAAETAKALTAKKSLKRDVMDIHRLLGHASEQITRDTAKTGGL------VLTGEWGACKGCSTAKAHR--------------FARLYVDLGGPMRVISLGGSSYVMIIVDDYSRFQAVEFIKKKSDATAALQSYMAEYITPKGLKIGAIRTDNSREF 783
            W  D+GA  H+ ++   F+       G + ++A+G  V + G   ++ + + P G  R   +N V +VP + +NL+S  Q   +     ++   +  +     + ++       GLY +   R    +  A+T+  S+     D+H  +GHA   + R     G +      + +     C+GC   K  +              F  L+ D+ GPM   SLGGS Y+++IVD+ S       ++ KSD+   L+SY+ +  T  G ++  +R D +REF
Sbjct:  295 WAVDSGATHHICNNKAKFDTLNERDEGEL-KVADGAKVAIKGVGTIIERVVLPNGDEREIEINNVLYVPNMKKNLLSVPQINMSGKFQVVFDGASMHVARKGSQQVVATADLVDGLYWL---RTPLCSVNAVTSAPSV-----DLHARMGHAPIDVLRKMVNKGMIKDAKVPLKSSGPSVCRGCQQGKMVQKPFPSNRDKRRYDTFELLHFDICGPMEEASLGGSRYLLLIVDEASGCMKGFCLRAKSDSEECLKSYITKVQTQFGKRVKFVRHDGAREF 565          
BLAST of mRNA_H-paniculata_contig23560.6365.1 vs. uniprot
Match: A0A6A3VFT2_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3VFT2_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 8.840e-17
Identity = 68/286 (23.78%), Postives = 124/286 (43.36%), Query Frame = 1
Query:    4 WNSDTGAIDHMRSDATTFEDYTPALPGTMCEIANGTFVPVAGWRRLVRQAIQPGGKSRVAVLNTVAHVPELGRNLISTRQAKDTWGKSFIYSANTASLGLGKDESLICNVSASSGLYEVEAVRGAAETAKALTAKKSLKRDVMDIHRLLGHASEQITRDT------------AKTGGLVLTGEWGACKGCSTAKAHR--------------FARLYVDLGGPMRVISLGGSSYVMIIVDDYSRFQAVEFIKKKSDATAALQSYMAEYITPKGLKIGAIRTDNSREF 783
            W  D+GA  H+ +D   F        G +  +A+G    + G   +V + + P G  R   +    +VP + +NL+S  Q   +     ++      +     + ++   +   GLY ++  +    +A A T+ K     ++D+H  +GHA  ++ R              +K+ G  L      C+GC   K  +              F  L+ D+ GPM   SLGGS Y+++IVD+ S       ++ KS++   +++Y+ +  T  G K+  +R D +REF
Sbjct:  148 WAVDSGATHHICNDKAKFAHLIERNEGEL-SVADGNKAAIKGVGTIVERVVLPNGDEREIEIKNALYVPSMSKNLLSVPQINKSGKFQVVFDGTKMQIAHKGSKQVVATANLMDGLYWLQTPQ---RSANAATSGK-----IVDLHARMGHAPVEVLRKMVDNHMIKDAKAPSKSSGPSL------CRGCQQGKMVQKPFPSNHDKRRYDTFELLHFDICGPMEENSLGGSKYLLLIVDEASGCMKGFCLRAKSESEDCIKTYIMKVQTQFGKKVKFVRHDGAREF 418          
BLAST of mRNA_H-paniculata_contig23560.6365.1 vs. uniprot
Match: H3H7N0_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H7N0_PHYRM)

HSP 1 Score: 89.4 bits (220), Expect = 1.110e-16
Identity = 69/280 (24.64%), Postives = 121/280 (43.21%), Query Frame = 1
Query:    4 WNSDTGAIDHMRSDATTFEDYTPALPGTMCEIANGTFVPVAGWRRLVRQAIQPGGKSRVAVLNTVAHVPELGRNLISTRQAKDTWGKSFIYSANTASLGLGKDESLICNVSASSGLYEVEAVRGAAETAKALTAKKSLKRDVMDIHRLLGHASEQITR-----DTAKTGGLVLTGEW-GACKGCSTAKAHR--------------FARLYVDLGGPMRVISLGGSSYVMIIVDDYSRFQAVEFIKKKSDATAALQSYMAEYITPKGLKIGAIRTDNSREF 783
            W  D+GA  H+ +D   F D      G +  +A+G    + G   +V + + P G  R   +    +VP + +NL+S  Q   +     ++      +     + ++   +   GLY ++    AA  A   T+ K++     D+H  +GHA  ++ R     D  K             C+GC   K  +              F  L+ D+ GPM   SLGGS Y+++IVD+ S       ++ KS++   +++Y+ +  T  G K+  +R D +REF
Sbjct:  181 WAVDSGATHHICNDKAKFADLIERNEGEL-SVADGNKAAIMGVGTIVERVVLPNGDERDIEIKNALYVPSMSKNLLSVPQINKSGLFQVVFDGTQMRVAHKASKQVVAAANLVDGLYWLQTPHRAANAA---TSGKTV-----DLHARMGHAPVEVLRKMVDSDMIKDAKAPSKSSGPSVCRGCQQGKMVQKPFPSNHDKRRYDTFELLHFDICGPMEEESLGGSKYLLLIVDEASGCMKGFCLRAKSESEDCIKTYVTKVQTQFGKKVKFVRHDGAREF 451          
BLAST of mRNA_H-paniculata_contig23560.6365.1 vs. uniprot
Match: A0A6A3HS94_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A6A3HS94_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.790e-16
Identity = 68/286 (23.78%), Postives = 124/286 (43.36%), Query Frame = 1
Query:    4 WNSDTGAIDHMRSDATTFEDYTPALPGTMCEIANGTFVPVAGWRRLVRQAIQPGGKSRVAVLNTVAHVPELGRNLISTRQAKDTWGKSFIYSANTASLGLGKDESLICNVSASSGLYEVEAVRGAAETAKALTAKKSLKRDVMDIHRLLGHASEQITRDT------------AKTGGLVLTGEWGACKGCSTAKAHR--------------FARLYVDLGGPMRVISLGGSSYVMIIVDDYSRFQAVEFIKKKSDATAALQSYMAEYITPKGLKIGAIRTDNSREF 783
            W +D+GA  H+ +D   F        G +  +A+G    + G   +V Q + P G  R   +    +VP + +NL+S  Q   +     ++      +     + ++   +   GLY ++  +    +A A T+ K     ++D+H  +GHA  ++ R              +K+ G  L      C+GC   K  +              F  L+ D+ GPM   SLGGS Y+++IVD+ S       ++ KS++   +++Y+ +     G K+  +R D +REF
Sbjct:  157 WAADSGATHHICNDKAKFAHLIERNEGEL-SVADGNKAAIMGVGTIVEQVVLPNGDEREIEIKNALYVPSMSKNLLSVPQINKSGKFQVVFDGIKMQIAHKGSKQVVATANLMDGLYWLQTPQ---RSANAATSGK-----IVDLHARMGHAPVEVLRKMVDNHMIKDAKAPSKSSGPSL------CRGCQQGKMVQKPFPSNHDKRRYDTFELLHFDICGPMEENSLGGSKYLLLIVDEASGCMKGFCLRAKSESEDCIKTYIMKVQKQFGKKVKFVRHDGAREF 427          
BLAST of mRNA_H-paniculata_contig23560.6365.1 vs. uniprot
Match: H3H8M3_PHYRM (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8M3_PHYRM)

HSP 1 Score: 87.8 bits (216), Expect = 5.420e-16
Identity = 66/280 (23.57%), Postives = 122/280 (43.57%), Query Frame = 1
Query:    4 WNSDTGAIDHMRSDATTFEDYTPALPGTMCEIANGTFVPVAGWRRLVRQAIQPGGKSRVAVLNTVAHVPELGRNLISTRQAKDTWGKSFIYSANTASLGLGKDESLICNVSASSGLYEVEAVRGAAETAKALTAKKSLKRDVMDIHRLLGHASEQITRDTAKTGGLV------LTGEWGACKGCSTAKAHR--------------FARLYVDLGGPMRVISLGGSSYVMIIVDDYSRFQAVEFIKKKSDATAALQSYMAEYITPKGLKIGAIRTDNSREF 783
            W  D+GA  H+ +D   F        G +  +A+G    + G   +V + + P G  R   +    +VP + +NL+S  Q   +     ++      +     + ++   +   GLY ++  +    +A A T+ K++     D+H  +GHA  ++ R     G +        +     C+GC   K  +              F  L+ D+ GPM   SLGGS Y+++IVD+ S       ++ KS++   +++Y+ +  T  G K+  +R D +REF
Sbjct:  418 WAVDSGATHHICNDKAKFAHLVERNEGEL-SVADGNKAAIMGVGTIVERVVLPNGDERDIEIKNALYVPIMSKNLLSVPQINKSGLFQVVFDGTQMRVAHKASKQVVAAANLVDGLYWLQTPQ---RSANAATSGKTV-----DLHARMGHAPVEVLRKMIDNGMIKDAKAPSKSSGPSVCRGCQQGKMVQKPFPSNRDKRRYDTFELLHFDMCGPMEEESLGGSKYLLLIVDEASGCMKGFCLRAKSESEDCIKTYVTKVQTQFGKKVKFVRHDGAREF 688          
BLAST of mRNA_H-paniculata_contig23560.6365.1 vs. uniprot
Match: H3GE80_PHYRM (Gag-Pol-p199 n=6 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GE80_PHYRM)

HSP 1 Score: 87.4 bits (215), Expect = 8.780e-16
Identity = 65/260 (25.00%), Postives = 121/260 (46.54%), Query Frame = 1
Query:    4 WNSDTGAIDHMRSDATTFEDYTPALPGTMCEIANGTFVPVAGWRRLVRQAIQPGGKSRVAVLNTVAHVPELGRNLISTRQAKDTWGKSFIYSANTASLGLGKDESLICNVSASSGLYEVEAVRGAAETAKALTAKKSLKRDVMDIHRLLGHASEQITRDTAKTGGLVLTGEWGACKGCSTAKAHRFARLYVDLGGPMRVISLGGSSYVMIIVDDYSRFQAVEFIKKKSDATAALQSYMAEYITPKGLKIGAIRTDNSREF 783
            W  D+GA  H+ +D   F        G +  +A+G    + G   +V + + P G  R   +    +VP + +NL+S  Q   +     ++      +     + ++  V+   GLY  +  +    +A A T+ K++     D+H  +GHA  ++ R   K  G ++   + + +     +   F  L+ D+ GPM   SLGGS Y+++IVD+ S       ++ KS++   +++Y+ +  T  G KI  +R D +REF
Sbjct: 1015 WAVDSGATHHICNDKAKFAHLIERNEGEL-SVADGNKAAIMGVGTIVERVVLPNGDERDIEIKNALYVPSMSKNLLSVPQINKSGLFQVVFDGTQMRVAHKASKQVVVAVNLVDGLYWPQTPQ---RSANAATSGKTV-----DLHARMGHAPVEVLR---KMQGKMVQKPFPSNR--DKRRYDTFELLHFDICGPMEEESLGGSKYLLLIVDEASGCMKGFCLRAKSESEDCIKTYVTKVQTQFGKKIKFVRHDGAREF 1260          
BLAST of mRNA_H-paniculata_contig23560.6365.1 vs. uniprot
Match: H3H8S0_PHYRM (Integrase catalytic domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H8S0_PHYRM)

HSP 1 Score: 86.7 bits (213), Expect = 1.390e-15
Identity = 67/280 (23.93%), Postives = 121/280 (43.21%), Query Frame = 1
Query:    4 WNSDTGAIDHMRSDATTFEDYTPALPGTMCEIANGTFVPVAGWRRLVRQAIQPGGKSRVAVLNTVAHVPELGRNLISTRQAKDTWGKSFIYSANTASLGLGKDESLICNVSASSGLYEVEAVRGAAETAKALTAKKSLKRDVMDIHRLLGHASEQITR-----DTAKTGGLVLTGEW-GACKGCSTAKAHR--------------FARLYVDLGGPMRVISLGGSSYVMIIVDDYSRFQAVEFIKKKSDATAALQSYMAEYITPKGLKIGAIRTDNSREF 783
            W  D+GA  H+ +D   F        G +  +A+G    + G   +V + + P G  R   +    +VP + +NL+S  Q   +     ++      +     + ++   +   GLY ++  +    +A A T+ K++     D+H  +GHA  ++ R     D  K             C+GC   K  +              F  L+ D+ GPM   SLGGS Y+++IVD+ S       ++ KS++   +++Y+ +  T  G K+  +R D +REF
Sbjct:  296 WAVDSGATHHICNDKAKFAHLIERNEGEL-SVADGNKAAIMGVGTIVERVVLPNGDERDIEIKNALYVPSMSKNLLSVPQINKSGLFQVVFDGTQMRVAHKASKQVVAAANLVDGLYWLQTPQ---RSANAATSGKTV-----DLHARMGHAPVEVLRKMIDNDMIKDAKAPSKSSGPSVCRGCQQGKMVQKPFPSNRDKRRYDTFELLHFDICGPMEEESLGGSKYLLLIVDEASGCMKGFCLRAKSESEDCIKTYVTKVQTQFGKKVKFVRHDGAREF 566          
BLAST of mRNA_H-paniculata_contig23560.6365.1 vs. uniprot
Match: H3H9K0_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H9K0_PHYRM)

HSP 1 Score: 85.9 bits (211), Expect = 2.300e-15
Identity = 68/280 (24.29%), Postives = 120/280 (42.86%), Query Frame = 1
Query:    4 WNSDTGAIDHMRSDATTFEDYTPALPGTMCEIANGTFVPVAGWRRLVRQAIQPGGKSRVAVLNTVAHVPELGRNLISTRQAKDTWGKSFIYSANTASLGLGKDESLICNVSASSGLYEVEAVRGAAETAKALTAKKSLKRDVMDIHRLLGHASEQITR-----DTAKTGGLVLTGEW-GACKGCSTAKAHR--------------FARLYVDLGGPMRVISLGGSSYVMIIVDDYSRFQAVEFIKKKSDATAALQSYMAEYITPKGLKIGAIRTDNSREF 783
            W  D+GA  H+ +D   F        G +  +A+G    + G   +V + + P G  R   +    +VP + +NL+S  Q   +     ++      +     + L+   +   GLY ++  +    +A A T+ K++     D+H  +GHA  ++ R     D  K             C+GC   K  +              F  L+ D+ GPM   SLGGS Y+++IVD  S       ++ KS++   +++Y+ +  T  G K+  +R D +REF
Sbjct:  296 WAVDSGATHHICNDKAKFAHLIERNEGEL-SVADGNKAAIMGVGTIVERVVLPNGDERDIEIKNALYVPSMSKNLLSVPQINKSGLFQVVFDGAQMRVAHKASKQLVAAANLVDGLYWLQTPQ---RSANAATSGKTV-----DLHARMGHAPVEVLRKMVDNDMIKDAKAPSKSSGPSVCRGCQQGKMVQKPFPSNRDKRRYDTFELLHFDICGPMEEESLGGSKYLLLIVDKASGCMKGFCLRAKSESEDCIKTYVTKVQTQFGKKVKFVRHDGAREF 566          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23560.6365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5GTD8_9HEMI2.770e-2229.14Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5G7E3_9HEMI1.650e-2128.42Integrase catalytic domain-containing protein (Fra... [more]
A0A6A4XZ99_9STRA5.920e-1824.64Integrase catalytic domain-containing protein (Fra... [more]
A0A6A3VFT2_9STRA8.840e-1723.78Integrase catalytic domain-containing protein n=1 ... [more]
H3H7N0_PHYRM1.110e-1624.64Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A6A3HS94_9STRA1.790e-1623.78Retrovirus-related Pol polyprotein from transposon... [more]
H3H8M3_PHYRM5.420e-1623.57Integrase catalytic domain-containing protein n=3 ... [more]
H3GE80_PHYRM8.780e-1625.00Gag-Pol-p199 n=6 Tax=Phytophthora ramorum TaxID=16... [more]
H3H8S0_PHYRM1.390e-1523.93Integrase catalytic domain-containing protein n=3 ... [more]
H3H9K0_PHYRM2.300e-1524.29Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23560contigH-paniculata_contig23560:2794..3618 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score98.2
Seed ortholog evalue6e-18
Seed eggNOG ortholog6334.EFV48956
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3BGB6@33208,3D5G4@33213,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons2
Model size783
Cds size783
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.9132845-CDS-H-paniculata_contig23560:2793..33571622929669.9132845-CDS-H-paniculata_contig23560:2793..3357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23560 2794..3357 +
1691480959.972095-CDS-H-paniculata_contig23560:2793..33571691480959.972095-CDS-H-paniculata_contig23560:2793..3357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23560 2794..3357 +
1622929669.9276943-CDS-H-paniculata_contig23560:3399..36181622929669.9276943-CDS-H-paniculata_contig23560:3399..3618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23560 3400..3618 +
1691480959.9829817-CDS-H-paniculata_contig23560:3399..36181691480959.9829817-CDS-H-paniculata_contig23560:3399..3618Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23560 3400..3618 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23560.6365.1prot_H-paniculata_contig23560.6365.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23560 2794..3618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23560.6365.1

>prot_H-paniculata_contig23560.6365.1 ID=prot_H-paniculata_contig23560.6365.1|Name=mRNA_H-paniculata_contig23560.6365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp
HWNSDTGAIDHMRSDATTFEDYTPALPGTMCEIANGTFVPVAGWRRLVRQ
AIQPGGKSRVAVLNTVAHVPELGRNLISTRQAKDTWGKSFIYSANTASLG
LGKDESLICNVSASSGLYEVEAVRGAAETAKALTAKKSLKRDVMDIHRLL
GHASEQITRDTAKTGGLVLTGEWGACKGCSTAKAHRFARLYVDLGGPMRV
ISLGGSSYVMIIVDDYSRFQAVEFIKKKSDATAALQSYMAEYITPKGLKI
GAIRTDNSREF
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mRNA from alignment at H-paniculata_contig23560:2794..3618+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23560.6365.1 ID=mRNA_H-paniculata_contig23560.6365.1|Name=mRNA_H-paniculata_contig23560.6365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=825bp|location=Sequence derived from alignment at H-paniculata_contig23560:2794..3618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTGGAATTCAGACACCGGCGCGATAGACCATATGAGGTCGGATGCGAC TACGTTCGAGGACTACACTCCAGCGCTCCCGGGGACCATGTGTGAAATCG CCAACGGAACATTCGTGCCGGTGGCGGGGTGGAGACGCCTTGTGCGTCAA GCAATTCAACCGGGGGGGAAATCACGAGTAGCAGTGTTAAACACGGTTGC CCACGTACCCGAGCTCGGGCGCAATTTAATCTCCACACGCCAAGCAAAAG ATACATGGGGTAAATCGTTCATATACAGTGCCAACACAGCAAGCCTCGGG CTAGGGAAGGACGAGAGCCTTATCTGCAATGTTTCAGCATCTTCAGGACT GTATGAGGTGGAGGCCGTTCGGGGTGCTGCGGAAACAGCAAAAGCTCTGA CGGCGAAAAAATCCTTGAAGCGCGACGTCATGGACATACACCGACTGCTT GGGCATGCGAGCGAGCAGATCACAAGGGATACGGCGAAAACGGGCGGGCT CGTGCTGACGGGTGAGTGGGGGGCTTGCAAAGGATGCTCCACTGCGAAGG CTCACCGATTCGCCGTGCCGAAAAAGACCGACTAGCGAGTCACATAGGCA GCGGAGCGCCTATACGTCGACCTGGGCGGACCCATGCGAGTAATCAGCTT GGGCGGTAGCTCGTATGTGATGATCATCGTCGATGACTACTCGCGGTTCC AAGCTGTCGAGTTCATCAAGAAGAAGAGCGATGCCACTGCAGCTCTCCAG AGCTACATGGCCGAATATATCACACCGAAGGGACTCAAGATCGGCGCCAT TCGTACGGACAACAGCAGGGAGTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig23560:2794..3618+

>mRNA_H-paniculata_contig23560.6365.1 ID=mRNA_H-paniculata_contig23560.6365.1|Name=mRNA_H-paniculata_contig23560.6365.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig23560:2794..3618+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACTGGAATTCAGACACCGGCGCGATAGACCATATGAGGTCGGATGCGAC
TACGTTCGAGGACTACACTCCAGCGCTCCCGGGGACCATGTGTGAAATCG
CCAACGGAACATTCGTGCCGGTGGCGGGGTGGAGACGCCTTGTGCGTCAA
GCAATTCAACCGGGGGGGAAATCACGAGTAGCAGTGTTAAACACGGTTGC
CCACGTACCCGAGCTCGGGCGCAATTTAATCTCCACACGCCAAGCAAAAG
ATACATGGGGTAAATCGTTCATATACAGTGCCAACACAGCAAGCCTCGGG
CTAGGGAAGGACGAGAGCCTTATCTGCAATGTTTCAGCATCTTCAGGACT
GTATGAGGTGGAGGCCGTTCGGGGTGCTGCGGAAACAGCAAAAGCTCTGA
CGGCGAAAAAATCCTTGAAGCGCGACGTCATGGACATACACCGACTGCTT
GGGCATGCGAGCGAGCAGATCACAAGGGATACGGCGAAAACGGGCGGGCT
CGTGCTGACGGGTGAGTGGGGGGCTTGCAAAGGATGCTCCACTGCGAAGG
CTCACCGATTCGCCCACTGGAATTCAGACACCGGCGCGATAGACCATATG
AGGTCGGATGCGACTACGTTCGAGGACTACACTCCAGCGCTCCCGGGGAC
CATGTGTGAAATCGCCAACGGAACATTCGTGCCGGTGGCGGGGTGGAGAC
GCCTTGTGCGTCAAGCAATTCAACCGGGGGGGAAATCACGAGTAGCAGTG
TTAAACACGGTTGCCCACGTACCCGAGCTCGGGCGCAATTTAATCTCCAC
ACGCCAAGCAAAAGATACATGGGGTAAATCGTTCATATACAGTGCCAACA
CAGCAAGCCTCGGGCTAGGGAAGGACGAGAGCCTTATCTGCAATGTTTCA
GCATCTTCAGGACTGTATGAGGTGGAGGCCGTTCGGGGTGCTGCGGAAAC
AGCAAAAGCTCTGACGGCGAAAAAATCCTTGAAGCGCGACGTCATGGACA
TACACCGACTGCTTGGGCATGCGAGCGAGCAGATCACAAGGGATACGGCG
AAAACGGGCGGGCTCGTGCTGACGGGTGAGTGGGGGGCTTGCAAAGGATG
CTCCACTGCGAAGGCTCACCGATTCGCCCGCCTATACGTCGACCTGGGCG
GACCCATGCGAGTAATCAGCTTGGGCGGTAGCTCGTATGTGATGATCATC
GTCGATGACTACTCGCGGTTCCAAGCTGTCGAGTTCATCAAGAAGAAGAG
CGATGCCACTGCAGCTCTCCAGAGCTACATGGCCGAATATATCACACCGA
AGGGACTCAAGATCGGCGCCATTCGTACGGACAACAGCAGGGAGTTCCGC
CTATACGTCGACCTGGGCGGACCCATGCGAGTAATCAGCTTGGGCGGTAG
CTCGTATGTGATGATCATCGTCGATGACTACTCGCGGTTCCAAGCTGTCG
AGTTCATCAAGAAGAAGAGCGATGCCACTGCAGCTCTCCAGAGCTACATG
GCCGAATATATCACACCGAAGGGACTCAAGATCGGCGCCATTCGTACGGA
CAACAGCAGGGAGTTC
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