prot_H-paniculata_contig23550.6364.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig23550.6364.1
Unique Nameprot_H-paniculata_contig23550.6364.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length234
Homology
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 147 bits (370), Expect = 8.880e-37
Identity = 93/244 (38.11%), Postives = 129/244 (52.87%), Query Frame = 0
Query:    4 LLHKRLGHM--RDLHMVAQQRGI----KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 233
            L H R GH+  R L ++ Q+  +     +  +  +C  C  GK  + P  +         LELVH DI G      F  +R F++FV+D+SRM  VY L  KSEA    KQF+      +G  +K        EFT   F ++C  N IK++L+A YT QQNGVA R  R++ EM RS +   ++    WAEA+  AV+ LN SP++    +T  E WH   PK+D  +IFGCTAY    SQ+R
Sbjct:  124 LWHLRYGHLNQRSLQLLHQKSMVVGLPSIHSEKEICEGCIFGKFHRLPFSQSSWRAKAP-LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKR 366          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU)

HSP 1 Score: 147 bits (370), Expect = 9.620e-37
Identity = 93/244 (38.11%), Postives = 129/244 (52.87%), Query Frame = 0
Query:    4 LLHKRLGHM--RDLHMVAQQRGI----KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 233
            L H R GH+  R L ++ Q+  +     +  +  +C  C  GK  + P  +         LELVH DI G      F  +R F++FV+D+SRM  VY L  KSEA    KQF+      +G  +K        EFT   F ++C  N IK++L+A YT QQNGVA R  R++ EM RS +   ++    WAEA+  AV+ LN SP++    +T  E WH   PK+D  +IFGCTAY    SQ+R
Sbjct:  361 LWHLRYGHLNQRSLQLLHQKSMVVGLPSIHSEKEICEGCIFGKFHRLPFSQSSWRAKAP-LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKR 603          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A0A9WQD4_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WQD4_LYGHE)

HSP 1 Score: 146 bits (369), Expect = 1.320e-36
Identity = 88/245 (35.92%), Postives = 126/245 (51.43%), Query Frame = 0
Query:    3 KLLHKRLGHMRDLHMVAQQRGIKLRGKLG------VCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVDE-FFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 233
            ++ HKRLGH+    M   Q G+    K        VC  C  GK +++P    +  +  E LEL+H D+ G   E     +R F+ F +D +R   VY L+HK EAL   K+F+  +    G +I+       +EF  +AF  FC+ N I+ + S  Y  QQNGV+ R  R++ E  RS M  A +  + WAEAV AA +  N+SP+   N  T  E W    P L HL++FGCTAY +    +R
Sbjct:  397 QIWHKRLGHLSSGGMARLQGGLATGLKFPATPCDKVCKGCVFGKHARKPFPSGKAHRANEVLELIHTDLCGPFKENSMSGKRYFITFTDDKTRKTSVYFLKHKDEALTKFKEFKARVENETGKRIRFLRSDNGKEFVNKAFSDFCSVNGIQHQKSIDYCPQQNGVSERVNRTLVEKARSMMLDAKLPAKYWAEAVNAACFLKNVSPTIAVNNMTPFEAWSNRKPDLSHLKVFGCTAYALVPKSKR 641          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS)

HSP 1 Score: 138 bits (347), Expect = 1.160e-33
Identity = 86/246 (34.96%), Postives = 132/246 (53.66%), Query Frame = 0
Query:    6 HKRLGH--------MRDLHMVAQQRGIKLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSR-LHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQRR 234
            HKRLGH        M+D  +V      K+  +   C AC  GK S++   K  + +T E+LE+VH D+ G + ++  +  R +V+F++DY+ M  VY L+ KSE     K+F+  + K +G  IK        EFT   F +FC +  I ++++  Y+ QQNG A R  RS+ EM RS +   ++  + WAEAV  + Y  N  P++ + +  T  EKW G  P + HLR+FG   Y+    Q+RR
Sbjct:  457 HKRLGHVGKRRLQEMQDKDLVKGLPSFKVEKE--ACKACNLGKQSRKSFPKESQTKTKEKLEIVHTDVCGPMQNQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFLKFKKFKAMVEKQSGCVIKTLRSDGGGEFTSHEFNRFCEEEGINRQVTLPYSPQQNGAAERKNRSLVEMARSMIVEQDLPLKLWAEAVYTSTYLQNRLPTKAIEDDVTPMEKWCGHKPNVSHLRLFGSICYVHIPDQKRR 700          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1)

HSP 1 Score: 137 bits (344), Expect = 2.940e-33
Identity = 85/237 (35.86%), Postives = 124/237 (52.32%), Query Frame = 0
Query:    4 LLHKRLGH-----MRDLHMVAQQRGI-KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVD-EFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYM 226
            L H RLGH     M ++      RGI  ++    +C  C   K ++Q      + +  E LELV+ D+ G +  +     R F++ V+D+ R   VY ++ K +A    K+F+  + K +  +IK        EFT  AF  FC ++ I ++L+A YT QQNGV  R  R+V E TRS + T  +    W EAVR AVY LN   ++  N  T +E+W G  P L HLR+FGC AY+
Sbjct:  481 LWHSRLGHINFRKMEEMARKGMVRGIPSIKHPTQLCEGCLVSKQTRQSFPNEAQWRAKEPLELVYADLCGPITPQTAGGNRYFLLIVDDFCRFMWVYMIKTKDQAFMEFKKFKTLVEKQSSYKIKTLRTDRGGEFTSRAFNLFCEEHGINRQLTAPYTPQQNGVVERRNRTVLEATRSLLKTMKVPDTFWGEAVRHAVYVLNRVSTKALNNMTPYERWKGRKPTLQHLRVFGCVAYV 717          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A6V7NQR9_ANACO (Integrase catalytic domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NQR9_ANACO)

HSP 1 Score: 131 bits (330), Expect = 7.390e-33
Identity = 83/225 (36.89%), Postives = 122/225 (54.22%), Query Frame = 0
Query:    4 LLHKRLGHM--RDLHMVAQQR---GIKLRGKLG-VCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKL 214
            L H R GH+  + LH++ ++    G+    K+  +C  C  GK  + P  K         LEL+H DI G      F ++R F++FV+DY+RM  +Y L  KSEA     QF+  + K +G QIK        EFT  +F  +C +N IK++L+  +T QQNGVA R  R++ EM RS M    +  + WAEAV   V+ LN SP++    +T +E WHG  P++
Sbjct:  144 LWHLRYGHLNLKGLHLLKEKNMVLGLPSINKVDKICEGCVYGKLHRLPFPKTSWRAKAP-LELIHADICGPTRTPSFNQKRYFLLFVDDYTRMMWIYFLEQKSEAFSIFIQFKAYVEKQSGHQIKILRTDRGGEFTSHSFNNYCKENGIKRQLTVRHTPQQNGVAERKNRTIVEMARSMMKGKGLPNQFWAEAVNTTVFILNRSPTKAVQNKTPYEAWHGQKPQV 367          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A5B7BAZ6_DAVIN (Putative polyprotein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BAZ6_DAVIN)

HSP 1 Score: 131 bits (330), Expect = 1.460e-32
Identity = 73/184 (39.67%), Postives = 105/184 (57.07%), Query Frame = 0
Query:   58 LELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANG-----LQIKR--EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 233
            LELVH DI G      F+ ++ F++FV+D+SRM  VY L  KSEA  +  QF++   + +G     L+I R  EF  E F+ +C    IK++L+  YT QQNG+A R   ++ EM RS +    +    W EAV   VY LN SP+++   RT +E W+G  P ++  R+FG  AY +  SQ R
Sbjct:   39 LELVHADICGPTRTPTFQNKKYFLLFVDDFSRMMWVYFLEQKSEAFSTFLQFKQSAERQSGHPLKTLRIDRGGEFLSEEFKNYCKNKGIKRQLTVRYTPQQNGMAERKNHTIIEMARSMLKAKGLPNNFWVEAVNTVVYILNRSPTKVVPNRTPYEAWNGRKPDVNFFRVFGSIAYSLIPSQHR 222          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A251T2S6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T2S6_HELAN)

HSP 1 Score: 134 bits (337), Expect = 2.440e-32
Identity = 87/244 (35.66%), Postives = 127/244 (52.05%), Query Frame = 0
Query:    4 LLHKRLGH-----MRDLHMVAQQRGI-KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVD-EFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 233
            L H+R GH     + D+ M     G+ K+     +C  C  GK +++P  K    + +E L+L+H DI G +  +     R F+ F++D+SR   VY L+ KS+AL   + F+R      G +IK        E+ G  F+ F  +N I  +L+ +YT QQNGVA R  R++ E++RS M    +    WAEAV  A Y LN + ++     T  E W G  P +DHLRIFGC AY+    Q R
Sbjct:  356 LWHRRYGHVNFETLHDMGMNETVSGLPKIDKSSHICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQIGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNR 599          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A251S6V1_HELAN (Putative zinc finger, CCHC-type, Ribonuclease H-like domain, GAG-pre-integrase domain protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S6V1_HELAN)

HSP 1 Score: 132 bits (333), Expect = 7.900e-32
Identity = 86/244 (35.25%), Postives = 127/244 (52.05%), Query Frame = 0
Query:    4 LLHKRLGH-----MRDLHMVAQQRGI-KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVD-EFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 233
            L H+R GH     + D+ +     G+ K+     +C  C  GK +++P  K    + +E L+L+H DI G +  +     R F+ F++D+SR   VY L+ KS+AL   + F+R      G +IK        E+ G  F+ F  +N I  +L+ +YT QQNGVA R  R++ E++RS M    +    WAEAV  A Y LN + ++     T  E W G  P +DHLRIFGC AY+    Q R
Sbjct:  434 LWHRRYGHVNFETLHDMGINETVSGLPKIDKSSHICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQVGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNR 677          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN)

HSP 1 Score: 132 bits (332), Expect = 1.180e-31
Identity = 84/244 (34.43%), Postives = 133/244 (54.51%), Query Frame = 0
Query:    4 LLHKRLGHMR-DLHMVAQQRGI-----KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 233
            L HKR GH+  D  +  + +G+     K+  +  +C  C  GK +K+   +    Q ++ L+LVH DI G +  E     R F+ F++DY+R   VY L++KSEAL   K+F+    K +   IK        E+   AF+++   N I+ +L+ +Y+ QQNGVA R  R++ E++RS M    +    WAEAV  A Y LN + ++     T +E W+G  P ++HL++FGC AY+    Q+R
Sbjct:  433 LWHKRYGHVNVDTLINMENKGLVFGLPKIMKQESLCEGCISGKQTKKTFPRKAMWQASKPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKSWVYFLKYKSEALNYFKRFKALNEKQSDHLIKTLRSDRGGEYCSNAFQEYLKVNCIRHQLTNSYSPQQNGVAERKNRTLMELSRSMMNAKELPNCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRR 676          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y1QWW3_PRUDU8.880e-3738.11Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R9H3_PRUDU9.620e-3738.11Transposable element protein (Fragment) n=1 Tax=Pr... [more]
A0A0A9WQD4_LYGHE1.320e-3635.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2HJM6_9BRAS1.160e-3334.96Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
UPI0016531AD12.940e-3335.86uncharacterized protein LOC110900599 n=1 Tax=Helia... [more]
A0A6V7NQR9_ANACO7.390e-3336.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A5B7BAZ6_DAVIN1.460e-3239.67Putative polyprotein n=1 Tax=Davidia involucrata T... [more]
A0A251T2S6_HELAN2.440e-3235.66Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A251S6V1_HELAN7.900e-3235.25Putative zinc finger, CCHC-type, Ribonuclease H-li... [more]
A0A251UIF2_HELAN1.180e-3134.43Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 47..224
e-value: 1.1E-18
score: 69.2
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 76..160
e-value: 3.8E-8
score: 33.5
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 41..211
score: 9.435
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 122..233
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 122..233
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 54..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23550contigH-paniculata_contig23550:2308..3030 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23550.6364.1mRNA_H-paniculata_contig23550.6364.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig23550 2308..3030 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig23550.6364.1 ID=prot_H-paniculata_contig23550.6364.1|Name=mRNA_H-paniculata_contig23550.6364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
DIKLLHKRLGHMRDLHMVAQQRGIKLRGKLGVCSACERGKASKQPVKKYR
EEQTTERLELVHPDIDGSVDEFFEERRSFVIFVNDYSRMRKVYALRHKSE
ALWSLKQFERDIAKANGLQIKREFTGEAFRQFCAKNDIKQKLSAAYTSQQ
NGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNG
RTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf