mRNA_H-paniculata_contig23550.6364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23550.6364.1
Unique NamemRNA_H-paniculata_contig23550.6364.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU)

HSP 1 Score: 147 bits (370), Expect = 8.880e-37
Identity = 93/244 (38.11%), Postives = 129/244 (52.87%), Query Frame = 1
Query:   10 LLHKRLGHM--RDLHMVAQQRGI----KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
            L H R GH+  R L ++ Q+  +     +  +  +C  C  GK  + P  +         LELVH DI G      F  +R F++FV+D+SRM  VY L  KSEA    KQF+      +G  +K        EFT   F ++C  N IK++L+A YT QQNGVA R  R++ EM RS +   ++    WAEA+  AV+ LN SP++    +T  E WH   PK+D  +IFGCTAY    SQ+R
Sbjct:  124 LWHLRYGHLNQRSLQLLHQKSMVVGLPSIHSEKEICEGCIFGKFHRLPFSQSSWRAKAP-LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKR 366          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU)

HSP 1 Score: 147 bits (370), Expect = 9.620e-37
Identity = 93/244 (38.11%), Postives = 129/244 (52.87%), Query Frame = 1
Query:   10 LLHKRLGHM--RDLHMVAQQRGI----KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
            L H R GH+  R L ++ Q+  +     +  +  +C  C  GK  + P  +         LELVH DI G      F  +R F++FV+D+SRM  VY L  KSEA    KQF+      +G  +K        EFT   F ++C  N IK++L+A YT QQNGVA R  R++ EM RS +   ++    WAEA+  AV+ LN SP++    +T  E WH   PK+D  +IFGCTAY    SQ+R
Sbjct:  361 LWHLRYGHLNQRSLQLLHQKSMVVGLPSIHSEKEICEGCIFGKFHRLPFSQSSWRAKAP-LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKR 603          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A0A9WQD4_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WQD4_LYGHE)

HSP 1 Score: 146 bits (369), Expect = 1.320e-36
Identity = 88/245 (35.92%), Postives = 126/245 (51.43%), Query Frame = 1
Query:    7 KLLHKRLGHMRDLHMVAQQRGIKLRGKLG------VCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVDE-FFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
            ++ HKRLGH+    M   Q G+    K        VC  C  GK +++P    +  +  E LEL+H D+ G   E     +R F+ F +D +R   VY L+HK EAL   K+F+  +    G +I+       +EF  +AF  FC+ N I+ + S  Y  QQNGV+ R  R++ E  RS M  A +  + WAEAV AA +  N+SP+   N  T  E W    P L HL++FGCTAY +    +R
Sbjct:  397 QIWHKRLGHLSSGGMARLQGGLATGLKFPATPCDKVCKGCVFGKHARKPFPSGKAHRANEVLELIHTDLCGPFKENSMSGKRYFITFTDDKTRKTSVYFLKHKDEALTKFKEFKARVENETGKRIRFLRSDNGKEFVNKAFSDFCSVNGIQHQKSIDYCPQQNGVSERVNRTLVEKARSMMLDAKLPAKYWAEAVNAACFLKNVSPTIAVNNMTPFEAWSNRKPDLSHLKVFGCTAYALVPKSKR 641          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS)

HSP 1 Score: 138 bits (347), Expect = 1.160e-33
Identity = 86/246 (34.96%), Postives = 132/246 (53.66%), Query Frame = 1
Query:   16 HKRLGH--------MRDLHMVAQQRGIKLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSR-LHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQRR 702
            HKRLGH        M+D  +V      K+  +   C AC  GK S++   K  + +T E+LE+VH D+ G + ++  +  R +V+F++DY+ M  VY L+ KSE     K+F+  + K +G  IK        EFT   F +FC +  I ++++  Y+ QQNG A R  RS+ EM RS +   ++  + WAEAV  + Y  N  P++ + +  T  EKW G  P + HLR+FG   Y+    Q+RR
Sbjct:  457 HKRLGHVGKRRLQEMQDKDLVKGLPSFKVEKE--ACKACNLGKQSRKSFPKESQTKTKEKLEIVHTDVCGPMQNQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFLKFKKFKAMVEKQSGCVIKTLRSDGGGEFTSHEFNRFCEEEGINRQVTLPYSPQQNGAAERKNRSLVEMARSMIVEQDLPLKLWAEAVYTSTYLQNRLPTKAIEDDVTPMEKWCGHKPNVSHLRLFGSICYVHIPDQKRR 700          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1)

HSP 1 Score: 137 bits (344), Expect = 2.940e-33
Identity = 85/237 (35.86%), Postives = 124/237 (52.32%), Query Frame = 1
Query:   10 LLHKRLGH-----MRDLHMVAQQRGI-KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVD-EFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYM 678
            L H RLGH     M ++      RGI  ++    +C  C   K ++Q      + +  E LELV+ D+ G +  +     R F++ V+D+ R   VY ++ K +A    K+F+  + K +  +IK        EFT  AF  FC ++ I ++L+A YT QQNGV  R  R+V E TRS + T  +    W EAVR AVY LN   ++  N  T +E+W G  P L HLR+FGC AY+
Sbjct:  481 LWHSRLGHINFRKMEEMARKGMVRGIPSIKHPTQLCEGCLVSKQTRQSFPNEAQWRAKEPLELVYADLCGPITPQTAGGNRYFLLIVDDFCRFMWVYMIKTKDQAFMEFKKFKTLVEKQSSYKIKTLRTDRGGEFTSRAFNLFCEEHGINRQLTAPYTPQQNGVVERRNRTVLEATRSLLKTMKVPDTFWGEAVRHAVYVLNRVSTKALNNMTPYERWKGRKPTLQHLRVFGCVAYV 717          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A6V7NQR9_ANACO (Integrase catalytic domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NQR9_ANACO)

HSP 1 Score: 131 bits (330), Expect = 7.390e-33
Identity = 83/225 (36.89%), Postives = 122/225 (54.22%), Query Frame = 1
Query:   10 LLHKRLGHM--RDLHMVAQQR---GIKLRGKLG-VCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKL 642
            L H R GH+  + LH++ ++    G+    K+  +C  C  GK  + P  K         LEL+H DI G      F ++R F++FV+DY+RM  +Y L  KSEA     QF+  + K +G QIK        EFT  +F  +C +N IK++L+  +T QQNGVA R  R++ EM RS M    +  + WAEAV   V+ LN SP++    +T +E WHG  P++
Sbjct:  144 LWHLRYGHLNLKGLHLLKEKNMVLGLPSINKVDKICEGCVYGKLHRLPFPKTSWRAKAP-LELIHADICGPTRTPSFNQKRYFLLFVDDYTRMMWIYFLEQKSEAFSIFIQFKAYVEKQSGHQIKILRTDRGGEFTSHSFNNYCKENGIKRQLTVRHTPQQNGVAERKNRTIVEMARSMMKGKGLPNQFWAEAVNTTVFILNRSPTKAVQNKTPYEAWHGQKPQV 367          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A5B7BAZ6_DAVIN (Putative polyprotein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BAZ6_DAVIN)

HSP 1 Score: 131 bits (330), Expect = 1.460e-32
Identity = 73/184 (39.67%), Postives = 105/184 (57.07%), Query Frame = 1
Query:  172 LELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANG-----LQIKR--EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
            LELVH DI G      F+ ++ F++FV+D+SRM  VY L  KSEA  +  QF++   + +G     L+I R  EF  E F+ +C    IK++L+  YT QQNG+A R   ++ EM RS +    +    W EAV   VY LN SP+++   RT +E W+G  P ++  R+FG  AY +  SQ R
Sbjct:   39 LELVHADICGPTRTPTFQNKKYFLLFVDDFSRMMWVYFLEQKSEAFSTFLQFKQSAERQSGHPLKTLRIDRGGEFLSEEFKNYCKNKGIKRQLTVRYTPQQNGMAERKNHTIIEMARSMLKAKGLPNNFWVEAVNTVVYILNRSPTKVVPNRTPYEAWNGRKPDVNFFRVFGSIAYSLIPSQHR 222          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A251T2S6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T2S6_HELAN)

HSP 1 Score: 134 bits (337), Expect = 2.440e-32
Identity = 87/244 (35.66%), Postives = 127/244 (52.05%), Query Frame = 1
Query:   10 LLHKRLGH-----MRDLHMVAQQRGI-KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVD-EFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
            L H+R GH     + D+ M     G+ K+     +C  C  GK +++P  K    + +E L+L+H DI G +  +     R F+ F++D+SR   VY L+ KS+AL   + F+R      G +IK        E+ G  F+ F  +N I  +L+ +YT QQNGVA R  R++ E++RS M    +    WAEAV  A Y LN + ++     T  E W G  P +DHLRIFGC AY+    Q R
Sbjct:  356 LWHRRYGHVNFETLHDMGMNETVSGLPKIDKSSHICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQIGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNR 599          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A251S6V1_HELAN (Putative zinc finger, CCHC-type, Ribonuclease H-like domain, GAG-pre-integrase domain protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S6V1_HELAN)

HSP 1 Score: 132 bits (333), Expect = 7.900e-32
Identity = 86/244 (35.25%), Postives = 127/244 (52.05%), Query Frame = 1
Query:   10 LLHKRLGH-----MRDLHMVAQQRGI-KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVD-EFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
            L H+R GH     + D+ +     G+ K+     +C  C  GK +++P  K    + +E L+L+H DI G +  +     R F+ F++D+SR   VY L+ KS+AL   + F+R      G +IK        E+ G  F+ F  +N I  +L+ +YT QQNGVA R  R++ E++RS M    +    WAEAV  A Y LN + ++     T  E W G  P +DHLRIFGC AY+    Q R
Sbjct:  434 LWHRRYGHVNFETLHDMGINETVSGLPKIDKSSHICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQVGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNR 677          
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN)

HSP 1 Score: 132 bits (332), Expect = 1.180e-31
Identity = 84/244 (34.43%), Postives = 133/244 (54.51%), Query Frame = 1
Query:   10 LLHKRLGHMR-DLHMVAQQRGI-----KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
            L HKR GH+  D  +  + +G+     K+  +  +C  C  GK +K+   +    Q ++ L+LVH DI G +  E     R F+ F++DY+R   VY L++KSEAL   K+F+    K +   IK        E+   AF+++   N I+ +L+ +Y+ QQNGVA R  R++ E++RS M    +    WAEAV  A Y LN + ++     T +E W+G  P ++HL++FGC AY+    Q+R
Sbjct:  433 LWHKRYGHVNVDTLINMENKGLVFGLPKIMKQESLCEGCISGKQTKKTFPRKAMWQASKPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKSWVYFLKYKSEALNYFKRFKALNEKQSDHLIKTLRSDRGGEYCSNAFQEYLKVNCIRHQLTNSYSPQQNGVAERKNRTLMELSRSMMNAKELPNCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRR 676          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y1QWW3_PRUDU8.880e-3738.11Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R9H3_PRUDU9.620e-3738.11Transposable element protein (Fragment) n=1 Tax=Pr... [more]
A0A0A9WQD4_LYGHE1.320e-3635.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A6D2HJM6_9BRAS1.160e-3334.96Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
UPI0016531AD12.940e-3335.86uncharacterized protein LOC110900599 n=1 Tax=Helia... [more]
A0A6V7NQR9_ANACO7.390e-3336.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A5B7BAZ6_DAVIN1.460e-3239.67Putative polyprotein n=1 Tax=Davidia involucrata T... [more]
A0A251T2S6_HELAN2.440e-3235.66Putative zinc finger, CCHC-type n=1 Tax=Helianthus... [more]
A0A251S6V1_HELAN7.900e-3235.25Putative zinc finger, CCHC-type, Ribonuclease H-li... [more]
A0A251UIF2_HELAN1.180e-3134.43Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23550contigH-paniculata_contig23550:2308..3030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score141.7
Seed ortholog evalue4.2e-31
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons2
Model size702
Cds size702
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.8548124-CDS-H-paniculata_contig23550:2307..26711622929669.8548124-CDS-H-paniculata_contig23550:2307..2671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23550 2308..2671 +
1691480959.9349506-CDS-H-paniculata_contig23550:2307..26711691480959.9349506-CDS-H-paniculata_contig23550:2307..2671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23550 2308..2671 +
1622929669.8711746-CDS-H-paniculata_contig23550:2692..30301622929669.8711746-CDS-H-paniculata_contig23550:2692..3030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23550 2693..3030 +
1691480959.9587502-CDS-H-paniculata_contig23550:2692..30301691480959.9587502-CDS-H-paniculata_contig23550:2692..3030Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23550 2693..3030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23550.6364.1prot_H-paniculata_contig23550.6364.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23550 2308..3030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23550.6364.1

>prot_H-paniculata_contig23550.6364.1 ID=prot_H-paniculata_contig23550.6364.1|Name=mRNA_H-paniculata_contig23550.6364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
DIKLLHKRLGHMRDLHMVAQQRGIKLRGKLGVCSACERGKASKQPVKKYR
EEQTTERLELVHPDIDGSVDEFFEERRSFVIFVNDYSRMRKVYALRHKSE
ALWSLKQFERDIAKANGLQIKREFTGEAFRQFCAKNDIKQKLSAAYTSQQ
NGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNG
RTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQRR
back to top

mRNA from alignment at H-paniculata_contig23550:2308..3030+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23550.6364.1 ID=mRNA_H-paniculata_contig23550.6364.1|Name=mRNA_H-paniculata_contig23550.6364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=723bp|location=Sequence derived from alignment at H-paniculata_contig23550:2308..3030+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACATCAAGCTGCTTCACAAGCGACTAGGGCACATGCGCGATCTCCACAT GGTCGCGCAGCAGCGAGGCATCAAGTTGCGCGGGAAGCTCGGCGTCTGTT CAGCGTGTGAGCGAGGGAAGGCATCGAAGCAACCAGTAAAGAAGTATCGG GAAGAGCAGACAACGGAGCGACTGGAGCTAGTGCATCCTGACATCGATGG GTCGGTAGACGAATTTTTCGAGGAACGCCGTTCCTTCGTTATCTTCGTGA ACGACTACAGTCGAATGCGTAAGGTCTACGCCCTGAGACACAAATCAGAG GCGTTATGGTCTTTGAAACAGTTCGAGCGGGACATCGCGAAGGCAAACGG GCTACAAATAAAACGTCTTCGCTAAGATTAACGAGGAGAGTTTACAGGAG AAGCGTTCCGACAGTTTTGCGCGAAAAATGACATCAAGCAAAAATTGTCT GCCGCCTACACGTCGCAGCAAAACGGTGTGGCGGGGCGCAGCTGGCGTAG CGTTTTCGAGATGACCCGAAGTAAGATGACCACCGCCAACATAGGTGGCA GGTGTTGGGCGGAGGCGGTGCGCGCGGCTGTGTACTGCTTAAATCTCTCC CCGTCGCGACTGCACAACGGCAGGACGTCGCATGAGAAATGGCACGGCAC GGCACCAAAGCTTGACCACCTTCGTATCTTCGGCTGCACGGCGTACATGA TGTTCCAGTCGCAGCAGAGACGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig23550:2308..3030+

>mRNA_H-paniculata_contig23550.6364.1 ID=mRNA_H-paniculata_contig23550.6364.1|Name=mRNA_H-paniculata_contig23550.6364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig23550:2308..3030+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACATCAAGCTGCTTCACAAGCGACTAGGGCACATGCGCGATCTCCACAT
GGTCGCGCAGCAGCGAGGCATCAAGTTGCGCGGGAAGCTCGGCGTCTGTT
CAGCGTGTGAGCGAGGGAAGGCATCGAAGCAACCAGTAAAGAAGTATCGG
GAAGAGCAGACAACGGAGCGACTGGAGCTAGTGCATCCTGACATCGATGG
GTCGGTAGACGAATTTTTCGAGGAACGCCGTTCCTTCGTTATCTTCGTGA
ACGACTACAGTCGAATGCGTAAGGTCTACGCCCTGAGACACAAATCAGAG
GCGTTATGGTCTTTGAAACAGTTCGAGCGGGACATCGCGAAGGCAAACGG
GCTACAAATAAAACGACATCAAGCTGCTTCACAAGCGACTAGGGCACATG
CGCGATCTCCACATGGTCGCGCAGCAGCGAGGCATCAAGTTGCGCGGGAA
GCTCGGCGTCTGTTCAGCGTGTGAGCGAGGGAAGGCATCGAAGCAACCAG
TAAAGAAGTATCGGGAAGAGCAGACAACGGAGCGACTGGAGCTAGTGCAT
CCTGACATCGATGGGTCGGTAGACGAATTTTTCGAGGAACGCCGTTCCTT
CGTTATCTTCGTGAACGACTACAGTCGAATGCGTAAGGTCTACGCCCTGA
GACACAAATCAGAGGCGTTATGGTCTTTGAAACAGTTCGAGCGGGACATC
GCGAAGGCAAACGGGCTACAAATAAAACGAGAGTTTACAGGAGAAGCGTT
CCGACAGTTTTGCGCGAAAAATGACATCAAGCAAAAATTGTCTGCCGCCT
ACACGTCGCAGCAAAACGGTGTGGCGGGGCGCAGCTGGCGTAGCGTTTTC
GAGATGACCCGAAGTAAGATGACCACCGCCAACATAGGTGGCAGGTGTTG
GGCGGAGGCGGTGCGCGCGGCTGTGTACTGCTTAAATCTCTCCCCGTCGC
GACTGCACAACGGCAGGACGTCGCATGAGAAATGGCACGGCACGGCACCA
AAGCTTGACCACCTTCGTATCTTCGGCTGCACGGCGTACATGATGTTCCA
GTCGCAGCAGAGACGAGAGAGTTTACAGGAGAAGCGTTCCGACAGTTTTG
CGCGAAAAATGACATCAAGCAAAAATTGTCTGCCGCCTACACGTCGCAGC
AAAACGGTGTGGCGGGGCGCAGCTGGCGTAGCGTTTTCGAGATGACCCGA
AGTAAGATGACCACCGCCAACATAGGTGGCAGGTGTTGGGCGGAGGCGGT
GCGCGCGGCTGTGTACTGCTTAAATCTCTCCCCGTCGCGACTGCACAACG
GCAGGACGTCGCATGAGAAATGGCACGGCACGGCACCAAAGCTTGACCAC
CTTCGTATCTTCGGCTGCACGGCGTACATGATGTTCCAGTCGCAGCAGAG
ACGA
back to top