mRNA_H-paniculata_contig23550.6364.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A4Y1QWW3_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QWW3_PRUDU) HSP 1 Score: 147 bits (370), Expect = 8.880e-37 Identity = 93/244 (38.11%), Postives = 129/244 (52.87%), Query Frame = 1
Query: 10 LLHKRLGHM--RDLHMVAQQRGI----KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
L H R GH+ R L ++ Q+ + + + +C C GK + P + LELVH DI G F +R F++FV+D+SRM VY L KSEA KQF+ +G +K EFT F ++C N IK++L+A YT QQNGVA R R++ EM RS + ++ WAEA+ AV+ LN SP++ +T E WH PK+D +IFGCTAY SQ+R
Sbjct: 124 LWHLRYGHLNQRSLQLLHQKSMVVGLPSIHSEKEICEGCIFGKFHRLPFSQSSWRAKAP-LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKR 366
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A4Y1R9H3_PRUDU (Transposable element protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R9H3_PRUDU) HSP 1 Score: 147 bits (370), Expect = 9.620e-37 Identity = 93/244 (38.11%), Postives = 129/244 (52.87%), Query Frame = 1
Query: 10 LLHKRLGHM--RDLHMVAQQRGI----KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
L H R GH+ R L ++ Q+ + + + +C C GK + P + LELVH DI G F +R F++FV+D+SRM VY L KSEA KQF+ +G +K EFT F ++C N IK++L+A YT QQNGVA R R++ EM RS + ++ WAEA+ AV+ LN SP++ +T E WH PK+D +IFGCTAY SQ+R
Sbjct: 361 LWHLRYGHLNQRSLQLLHQKSMVVGLPSIHSEKEICEGCIFGKFHRLPFSQSSWRAKAP-LELVHADICGPTRTPSFNNKRYFILFVDDFSRMMWVYFLEQKSEAFSVFKQFKAFGENQSGHNLKVLRTDRGGEFTSNEFSEYCKSNGIKRELTARYTPQQNGVAERRNRTIVEMARSMLKAKSLPNTFWAEAIHTAVFILNRSPTKAVKDKTPFEAWHRFKPKVDFFKIFGCTAYAHIPSQKR 603
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A0A9WQD4_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9WQD4_LYGHE) HSP 1 Score: 146 bits (369), Expect = 1.320e-36 Identity = 88/245 (35.92%), Postives = 126/245 (51.43%), Query Frame = 1
Query: 7 KLLHKRLGHMRDLHMVAQQRGIKLRGKLG------VCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVDE-FFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
++ HKRLGH+ M Q G+ K VC C GK +++P + + E LEL+H D+ G E +R F+ F +D +R VY L+HK EAL K+F+ + G +I+ +EF +AF FC+ N I+ + S Y QQNGV+ R R++ E RS M A + + WAEAV AA + N+SP+ N T E W P L HL++FGCTAY + +R
Sbjct: 397 QIWHKRLGHLSSGGMARLQGGLATGLKFPATPCDKVCKGCVFGKHARKPFPSGKAHRANEVLELIHTDLCGPFKENSMSGKRYFITFTDDKTRKTSVYFLKHKDEALTKFKEFKARVENETGKRIRFLRSDNGKEFVNKAFSDFCSVNGIQHQKSIDYCPQQNGVSERVNRTLVEKARSMMLDAKLPAKYWAEAVNAACFLKNVSPTIAVNNMTPFEAWSNRKPDLSHLKVFGCTAYALVPKSKR 641
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS) HSP 1 Score: 138 bits (347), Expect = 1.160e-33 Identity = 86/246 (34.96%), Postives = 132/246 (53.66%), Query Frame = 1
Query: 16 HKRLGH--------MRDLHMVAQQRGIKLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSR-LHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQRR 702
HKRLGH M+D +V K+ + C AC GK S++ K + +T E+LE+VH D+ G + ++ + R +V+F++DY+ M VY L+ KSE K+F+ + K +G IK EFT F +FC + I ++++ Y+ QQNG A R RS+ EM RS + ++ + WAEAV + Y N P++ + + T EKW G P + HLR+FG Y+ Q+RR
Sbjct: 457 HKRLGHVGKRRLQEMQDKDLVKGLPSFKVEKE--ACKACNLGKQSRKSFPKESQTKTKEKLEIVHTDVCGPMQNQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFLKFKKFKAMVEKQSGCVIKTLRSDGGGEFTSHEFNRFCEEEGINRQVTLPYSPQQNGAAERKNRSLVEMARSMIVEQDLPLKLWAEAVYTSTYLQNRLPTKAIEDDVTPMEKWCGHKPNVSHLRLFGSICYVHIPDQKRR 700
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: UPI0016531AD1 (uncharacterized protein LOC110900599 n=1 Tax=Helianthus annuus TaxID=4232 RepID=UPI0016531AD1) HSP 1 Score: 137 bits (344), Expect = 2.940e-33 Identity = 85/237 (35.86%), Postives = 124/237 (52.32%), Query Frame = 1
Query: 10 LLHKRLGH-----MRDLHMVAQQRGI-KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVD-EFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYM 678
L H RLGH M ++ RGI ++ +C C K ++Q + + E LELV+ D+ G + + R F++ V+D+ R VY ++ K +A K+F+ + K + +IK EFT AF FC ++ I ++L+A YT QQNGV R R+V E TRS + T + W EAVR AVY LN ++ N T +E+W G P L HLR+FGC AY+
Sbjct: 481 LWHSRLGHINFRKMEEMARKGMVRGIPSIKHPTQLCEGCLVSKQTRQSFPNEAQWRAKEPLELVYADLCGPITPQTAGGNRYFLLIVDDFCRFMWVYMIKTKDQAFMEFKKFKTLVEKQSSYKIKTLRTDRGGEFTSRAFNLFCEEHGINRQLTAPYTPQQNGVVERRNRTVLEATRSLLKTMKVPDTFWGEAVRHAVYVLNRVSTKALNNMTPYERWKGRKPTLQHLRVFGCVAYV 717
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A6V7NQR9_ANACO (Integrase catalytic domain-containing protein n=1 Tax=Ananas comosus var. bracteatus TaxID=296719 RepID=A0A6V7NQR9_ANACO) HSP 1 Score: 131 bits (330), Expect = 7.390e-33 Identity = 83/225 (36.89%), Postives = 122/225 (54.22%), Query Frame = 1
Query: 10 LLHKRLGHM--RDLHMVAQQR---GIKLRGKLG-VCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIK-------REFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKL 642
L H R GH+ + LH++ ++ G+ K+ +C C GK + P K LEL+H DI G F ++R F++FV+DY+RM +Y L KSEA QF+ + K +G QIK EFT +F +C +N IK++L+ +T QQNGVA R R++ EM RS M + + WAEAV V+ LN SP++ +T +E WHG P++
Sbjct: 144 LWHLRYGHLNLKGLHLLKEKNMVLGLPSINKVDKICEGCVYGKLHRLPFPKTSWRAKAP-LELIHADICGPTRTPSFNQKRYFLLFVDDYTRMMWIYFLEQKSEAFSIFIQFKAYVEKQSGHQIKILRTDRGGEFTSHSFNNYCKENGIKRQLTVRHTPQQNGVAERKNRTIVEMARSMMKGKGLPNQFWAEAVNTTVFILNRSPTKAVQNKTPYEAWHGQKPQV 367
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A5B7BAZ6_DAVIN (Putative polyprotein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7BAZ6_DAVIN) HSP 1 Score: 131 bits (330), Expect = 1.460e-32 Identity = 73/184 (39.67%), Postives = 105/184 (57.07%), Query Frame = 1
Query: 172 LELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANG-----LQIKR--EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
LELVH DI G F+ ++ F++FV+D+SRM VY L KSEA + QF++ + +G L+I R EF E F+ +C IK++L+ YT QQNG+A R ++ EM RS + + W EAV VY LN SP+++ RT +E W+G P ++ R+FG AY + SQ R
Sbjct: 39 LELVHADICGPTRTPTFQNKKYFLLFVDDFSRMMWVYFLEQKSEAFSTFLQFKQSAERQSGHPLKTLRIDRGGEFLSEEFKNYCKNKGIKRQLTVRYTPQQNGMAERKNHTIIEMARSMLKAKGLPNNFWVEAVNTVVYILNRSPTKVVPNRTPYEAWNGRKPDVNFFRVFGSIAYSLIPSQHR 222
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A251T2S6_HELAN (Putative zinc finger, CCHC-type n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251T2S6_HELAN) HSP 1 Score: 134 bits (337), Expect = 2.440e-32 Identity = 87/244 (35.66%), Postives = 127/244 (52.05%), Query Frame = 1
Query: 10 LLHKRLGH-----MRDLHMVAQQRGI-KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVD-EFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
L H+R GH + D+ M G+ K+ +C C GK +++P K + +E L+L+H DI G + + R F+ F++D+SR VY L+ KS+AL + F+R G +IK E+ G F+ F +N I +L+ +YT QQNGVA R R++ E++RS M + WAEAV A Y LN + ++ T E W G P +DHLRIFGC AY+ Q R
Sbjct: 356 LWHRRYGHVNFETLHDMGMNETVSGLPKIDKSSHICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQIGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNR 599
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A251S6V1_HELAN (Putative zinc finger, CCHC-type, Ribonuclease H-like domain, GAG-pre-integrase domain protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251S6V1_HELAN) HSP 1 Score: 132 bits (333), Expect = 7.900e-32 Identity = 86/244 (35.25%), Postives = 127/244 (52.05%), Query Frame = 1
Query: 10 LLHKRLGH-----MRDLHMVAQQRGI-KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSVD-EFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
L H+R GH + D+ + G+ K+ +C C GK +++P K + +E L+L+H DI G + + R F+ F++D+SR VY L+ KS+AL + F+R G +IK E+ G F+ F +N I +L+ +YT QQNGVA R R++ E++RS M + WAEAV A Y LN + ++ T E W G P +DHLRIFGC AY+ Q R
Sbjct: 434 LWHRRYGHVNFETLHDMGINETVSGLPKIDKSSHICEGCIFGKHARKPFSKKAVWRASEPLQLIHSDICGPMKTQSIGGCRYFITFIDDFSRKTWVYFLKFKSQALSYFRNFKRLAENQVGYKIKSMRTDRGGEYCGHEFQNFLKENGIHHQLTTSYTPQQNGVAERKNRTLMELSRSMMKMKELPNMYWAEAVSCATYLLNRTITKSVPELTPQEVWSGRKPNVDHLRIFGCIAYVHIPKQNR 677
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Match: A0A251UIF2_HELAN (Integrase catalytic domain-containing protein n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UIF2_HELAN) HSP 1 Score: 132 bits (332), Expect = 1.180e-31 Identity = 84/244 (34.43%), Postives = 133/244 (54.51%), Query Frame = 1
Query: 10 LLHKRLGHMR-DLHMVAQQRGI-----KLRGKLGVCSACERGKASKQPVKKYREEQTTERLELVHPDIDGSV-DEFFEERRSFVIFVNDYSRMRKVYALRHKSEALWSLKQFERDIAKANGLQIKR-------EFTGEAFRQFCAKNDIKQKLSAAYTSQQNGVAGRSWRSVFEMTRSKMTTANIGGRCWAEAVRAAVYCLNLSPSRLHNGRTSHEKWHGTAPKLDHLRIFGCTAYMMFQSQQR 699
L HKR GH+ D + + +G+ K+ + +C C GK +K+ + Q ++ L+LVH DI G + E R F+ F++DY+R VY L++KSEAL K+F+ K + IK E+ AF+++ N I+ +L+ +Y+ QQNGVA R R++ E++RS M + WAEAV A Y LN + ++ T +E W+G P ++HL++FGC AY+ Q+R
Sbjct: 433 LWHKRYGHVNVDTLINMENKGLVFGLPKIMKQESLCEGCISGKQTKKTFPRKAMWQASKPLQLVHSDICGPMRTESIGGCRYFITFIDDYTRKSWVYFLKYKSEALNYFKRFKALNEKQSDHLIKTLRSDRGGEYCSNAFQEYLKVNCIRHQLTNSYSPQQNGVAERKNRTLMELSRSMMNAKELPNCYWAEAVACATYILNRTVTKTRPNITPYEAWNGNKPNVEHLKVFGCLAYVHIPKQRR 676 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23550.6364.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig23550.6364.1 >prot_H-paniculata_contig23550.6364.1 ID=prot_H-paniculata_contig23550.6364.1|Name=mRNA_H-paniculata_contig23550.6364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp DIKLLHKRLGHMRDLHMVAQQRGIKLRGKLGVCSACERGKASKQPVKKYRback to top mRNA from alignment at H-paniculata_contig23550:2308..3030+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig23550.6364.1 ID=mRNA_H-paniculata_contig23550.6364.1|Name=mRNA_H-paniculata_contig23550.6364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=723bp|location=Sequence derived from alignment at H-paniculata_contig23550:2308..3030+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig23550:2308..3030+ >mRNA_H-paniculata_contig23550.6364.1 ID=mRNA_H-paniculata_contig23550.6364.1|Name=mRNA_H-paniculata_contig23550.6364.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig23550:2308..3030+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |