mRNA_H-paniculata_contig2355.6363.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2355.6363.1
Unique NamemRNA_H-paniculata_contig2355.6363.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig2355.6363.1 vs. uniprot
Match: D7FQU1_ECTSI (Intraflagellar transport particle protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU1_ECTSI)

HSP 1 Score: 812 bits (2097), Expect = 1.610e-291
Identity = 391/445 (87.87%), Postives = 422/445 (94.83%), Query Frame = 1 
Query:    1 DAIGQYDLILQGNPDHQAGFNLVLCYYALEDGLSMRKAFQRLAAIPIEGVTDEDEEEQDSNAADEAEMMGQMAPDKLRAELKKRKRDAEHYVFTAAKLIAPVMDKKDWEAGFDWVVETIKLDHEFLASKMEIEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGDFKSADLYADMAIRHNRYNAKALVNKGNCLFMSKEYACAKEIFLEAIGVEVDCVEAIYNLGLVNMHLGLANDSLQAFQKLHTIIPNNTEVIYHIANLYEVHTDNLSQASKWFNILLARVPSDPGILSRMGHIANKEEDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFEAAAQIQPIEVKWRLMVTSCYRRMGNYQKALELYEKIHSDYPDNLECLRYLVAICRDHDRPFQHFQQKLARLDRSTPGRGPPITVSEV 1335
            DAIGQYD I+QGNPDHQ GFNLVLCYYALEDGLSM+KAFQRLAAIP++G T++D +E +S AADEAE+ GQ APDKLRAEL++RK++AEHYVFTAAKLIAPVMDKKDWE+G+DWVVETIKLDHE+LASKME+EKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEG+FKSAD YADMAIRHNRYNAKALVNKGNCLFMSKEY  AKEIFLEAIGVEVDCVEAIYNLGLVN+HLGL  DSLQAF+KLHTIIPNNTEVIYHIANLYE H +NL QASKWFNILLARVP+DPGILSRMGHIANKE+DDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFE AAQIQP EVKWRLMVTSC+RRMGNYQKALELYE+IH++YP+NLECLRYLVAICRDHDRPFQH+Q KLARLDR+TPGRGP    +EV
Sbjct:  189 DAIGQYDTIMQGNPDHQTGFNLVLCYYALEDGLSMKKAFQRLAAIPVQGTTEDDNDEDESKAADEAEITGQAAPDKLRAELQRRKKEAEHYVFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIYNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILLARVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDRATPGRGPSTATTEV 633
[Close]
BLAST of mRNA_H-paniculata_contig2355.6363.1 vs. uniprot
Match: A0A835Z9Y6_9STRA (Intraflagellar transport particle protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y6_9STRA)

HSP 1 Score: 593 bits (1529), Expect = 5.100e-205
Identity = 281/432 (65.05%), Postives = 365/432 (84.49%), Query Frame = 1 
Query:    1 DAIGQYDLILQGNPDHQAGFNLVLCYYALEDGLSMRKAFQRLAAIPIEGVT-DEDEEEQDSNAADEAEMMGQMAPDKLRAELKKRKRDAEHYVFTAAKLIAPVMDKKDWEAGFDWVVETIKLDHEFLASKMEIEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGDFKSADLYADMAIRHNRYNAKALVNKGNCLFMSKEYACAKEIFLEAIGVEVDCVEAIYNLGLVNMHLGLANDSLQAFQKLHTIIPNNTEVIYHIANLYEVHTDNLSQASKWFNILLARVPSDPGILSRMGHIANKEEDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFEAAAQIQPIEVKWRLMVTSCYRRMGNYQKALELYEKIHSDYPDNLECLRYLVAICRDHDRPFQHFQQKLARLDR 1293
            DAIG Y+ ++ G+PD   G NL+LC+YALED   M++AFQRL AI I G+  D+DE++ +  AAD+AE  G  A D LR EL++++++A+ Y+ TAAKLIAP +D +D +AG+ WV++ +K + E LAS ME+E+ALH+L+ ++F++AIE LKAFE KD  L+AMAATNL+FIYFLEGDF+SAD YAD+A+R +RYNAKALVNKGNCLF+++E+A AKE++LEAIGVEVDCVEAI+NLGL N+ LGL  D+LQAF+KLHT++P + EV+YHIANL+E   D+L+ A+KWFNILLARVP+DPG+L+RMG IAN++ED+SQAY YH ESYRHYP NLDVISWLGVWYVKSELYE+A+ +F  A+QIQP EVKWRLMVTSCYRRMG +Q+AL+LYE+IH+++PDNLECLRYLVA+C+D  RP++ +Q KLARLDR
Sbjct:  198 DAIGAYETVMSGSPDVLTGLNLLLCHYALEDAAQMKRAFQRLVAIAIPGLAEDDDEDDGEGKAADDAEATGLAAVDALRQELRQKRKEADSYIMTAAKLIAPALDARDCDAGYAWVIDALKAEREALASAMEVERALHHLRARQFERAIEGLKAFEWKDAPLRAMAATNLSFIYFLEGDFRSADSYADLAVRTDRYNAKALVNKGNCLFVAREHARAKEVYLEAIGVEVDCVEAIFNLGLANIQLGLVGDALQAFEKLHTVLPTSAEVVYHIANLHERGRDDLAAAAKWFNILLARVPTDPGVLARMGQIANRQEDESQAYHYHLESYRHYPANLDVISWLGVWYVKSELYERAVAFFARASQIQPGEVKWRLMVTSCYRRMGAFQRALDLYERIHAEHPDNLECLRYLVAMCKDLGRPYEQYQAKLARLDR 629
[Close]
BLAST of mRNA_H-paniculata_contig2355.6363.1 vs. uniprot
Match: A0A024UCQ4_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UCQ4_9STRA)

HSP 1 Score: 554 bits (1427), Expect = 9.580e-188
Identity = 269/444 (60.59%), Postives = 351/444 (79.05%), Query Frame = 1 
Query:    1 DAIGQYDLILQGNPDHQAGFNLVLCYYALEDGLSMRKAFQRLAAIPIEGVTDEDEEEQDSNAAD---EAEMMGQMAPDKLRAELKKRKRDAEHYVFTAAKLIAPVMDKKDWEAGFDWVVETIKLDHEFLASKMEIEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGDFKSADLYADMAIRHNRYNAKALVNKGNCLFMSKEYACAKEIFLEAIGVEVDCVEAIYNLGLVNMHLGLANDSLQAFQKLHTIIPNNTEVIYHIANLYEVHTDNLSQASKWFNILL-----ARVPSDPGILSRMGHIANKEEDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFEAAAQIQPIEVKWRLMVTSCYRRMGNYQKALELYEKIHSDYPDNLECLRYLVAICRDHDRPFQHFQQKLARLDRSTPGR 1308
            DA   ++ I++GNPD Q+GFNL++CYYA+ +   MR+ F  L  IP+EGV+D+D ++ +S   D       +  +  D L+AE++ R++ A  ++ TAAKL AP +DKKDW AG++WV++ +K+DHE +AS+MEI KALH+LK K+FDKAIE LKAFEKKD  LKAMAATNL+F+YF+EGD+  AD +A +A+RH RYNAKALVNKGNCL++  E   AKE++LEAIGVE DC+EAI+NLGLVN+ +G+ N++LQAF+KLH+I+P NTEV+Y IANL+++   N  QA+KWFNILL     A+  +DPG+L+RMG I NK++D++QA+ YH ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE AAQIQP EVKWRLMVTSC+RRMG YQKAL LYE+IH DYPDNLECLRYLVAIC+D  + ++H Q  LA+L+R    +
Sbjct:  297 DAATTFEDIMEGNPDFQSGFNLIICYYAIGEHDKMRRGFTNLIGIPMEGVSDDDSQDDESKDGDIPTGVPAVVHLKKDGLKAEIRARQKKATEFILTAAKLCAPALDKKDWLAGYNWVIDAMKVDHEPIASEMEICKALHFLKNKDFDKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYAQADKFASLAVRHQRYNAKALVNKGNCLYIKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPTNTEVLYQIANLHDM-MGNYRQAAKWFNILLSCFGSAKNIADPGVLARMGQIFNKDDDETQAFHYHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERAAQIQPTEVKWRLMVTSCHRRMGAYQKALVLYEQIHVDYPDNLECLRYLVAICKDLGQKYEHHQHALAKLERENAAK 739
[Close]
BLAST of mRNA_H-paniculata_contig2355.6363.1 vs. uniprot
Match: A0A418B6Z1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B6Z1_9STRA)

HSP 1 Score: 546 bits (1408), Expect = 2.030e-187
Identity = 270/444 (60.81%), Postives = 350/444 (78.83%), Query Frame = 1 
Query:    1 DAIGQYDLILQGNPDHQAGFNLVLCYYALEDGLSMRKAFQRLAAIPIEGVTDEDEEEQDSNAAD---EAEMMGQMAPDKLRAELKKRKRDAEHYVFTAAKLIAPVMDKKDWEAGFDWVVETIKLDHEFLASKMEIEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGDFKSADLYADMAIRHNRYNAKALVNKGNCLFMSKEYACAKEIFLEAIGVEVDCVEAIYNLGLVNMHLGLANDSLQAFQKLHTIIPNNTEVIYHIANLYEVHTDNLSQASKWFNILL-----ARVPSDPGILSRMGHIANKEEDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFEAAAQIQPIEVKWRLMVTSCYRRMGNYQKALELYEKIHSDYPDNLECLRYLVAICRDHDRPFQHFQQKLARLDRSTPGR 1308
            DA   ++ I++GNPD Q+GFNL++CYYA+ +   MR+ F  L  IP+EGV D+D ++ +S   D       +  +  D L+AE++ R++ A  ++ TAAKL AP +DKKDW AG++WV++ +K+DHE +AS+MEI KALH+LK K+FDKAIE LKAFEKKD  LKAMAATNL+F+YF+EGD+  AD +A +A+RH RYNAKALVNKGNCL++  E   AKE++LEAIGVE DC+EAI+NLGLVN+ +G+ N++LQAF+KLH+I+P NTEV+Y IANL+++   N  QA+K FNILL     A+  +DPG+L+RMG I NK++D++QA+ YH ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE AAQIQP EVKWRLMVTSC+RRMG YQKAL LYE+IH DYPDNLECLRYLVAIC+D  + ++H Q  LA+L+R T  R
Sbjct:  228 DAATTFEDIMEGNPDFQSGFNLIICYYAIGEHEKMRRGFTNLIGIPMEGVGDDDSQDDESKDGDIPTGVPAVVHLKKDGLKAEIRARQKKATEFILTAAKLCAPALDKKDWLAGYNWVIDAMKVDHEPIASEMEICKALHFLKNKDFDKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYAQADKFASLAVRHQRYNAKALVNKGNCLYIKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPTNTEVLYQIANLHDM-MGNYRQAAK-FNILLSCFGSAKNIADPGVLARMGQIFNKDDDETQAFHYHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERAAQIQPTEVKWRLMVTSCHRRMGAYQKALVLYEQIHVDYPDNLECLRYLVAICKDLGQKYEHHQHALAKLERGTSPR 669
[Close]
BLAST of mRNA_H-paniculata_contig2355.6363.1 vs. uniprot
Match: A0A485KY66_9STRA (Aste57867_13477 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KY66_9STRA)

HSP 1 Score: 550 bits (1418), Expect = 6.450e-186
Identity = 268/442 (60.63%), Postives = 352/442 (79.64%), Query Frame = 1 
Query:    1 DAIGQYDLILQGNPDHQAGFNLVLCYYALEDGLSMRKAFQRLAAIPIEGVTDEDEEEQDSNAADEAE-MMGQMAPDKLRAELKKRKRDAEHYVFTAAKLIAPVMDKKDWEAGFDWVVETIKLDHEFLASKMEIEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGDFKSADLYADMAIRHNRYNAKALVNKGNCLFMSKEYACAKEIFLEAIGVEVDCVEAIYNLGLVNMHLGLANDSLQAFQKLHTIIPNNTEVIYHIANLYEVHTDNLSQASKWFNILL-----ARVPSDPGILSRMGHIANKEEDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFEAAAQIQPIEVKWRLMVTSCYRRMGNYQKALELYEKIHSDYPDNLECLRYLVAICRDHDRPFQHFQQKLARLDRSTPGR 1308
            DA   ++ I++GNP+ Q+GFNL++CYYA+ +   MR+ F  L  IP+EGV DE+ EE++   +D A   +  +  D L+AE++ R++ A  ++ TAAKL AP +DKKDW AG++WV++ +K DHE +AS+MEI KALH+L+ K+F+KAIE LKAFEKKD  LKAMAATNL+F+YF+EGD+  AD +A +A+RH RYNA+ALVNKGNCLF+  E   AKE++LEAIGVE DC+EAI+NLGLVN+ +G+ N++LQAF+KLH+I+P NTEV+Y IANL+++   N  QA+KWFNILL     A+  +DPG+L+RMG I NK++D++QA+ YH ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE A+QIQP EVKWRLMVTSC+RRMG YQKAL LYE+IH DYPDNLECLRYLVAIC+D  + ++H QQ LA+L+R    +
Sbjct:  331 DAATTFEDIMEGNPEFQSGFNLIICYYAIGEHEKMRRGFTNLIGIPMEGVGDEEVEEEEGKESDLAVGSVVHLKKDGLKAEIRARQKKATDFILTAAKLCAPALDKKDWLAGYNWVIDAMKQDHEPIASEMEICKALHFLRNKDFEKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYAQADKFASLAVRHQRYNARALVNKGNCLFVKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPTNTEVLYQIANLHDM-MGNYRQAAKWFNILLSCFGSAKNVADPGVLARMGQIFNKDDDETQAFHYHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERASQIQPNEVKWRLMVTSCHRRMGAYQKALILYEQIHHDYPDNLECLRYLVAICKDLGQKYEHHQQALAKLERENAAK 771
[Close]
BLAST of mRNA_H-paniculata_contig2355.6363.1 vs. uniprot
Match: A0A6G0XD88_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XD88_9STRA)

HSP 1 Score: 549 bits (1414), Expect = 1.280e-185
Identity = 270/445 (60.67%), Postives = 349/445 (78.43%), Query Frame = 1 
Query:    1 DAIGQYDLILQGNPDHQAGFNLVLCYYALEDGLSMRKAFQRLAAIPIEGVTDEDEEEQDSNAADEAEMMG----QMAPDKLRAELKKRKRDAEHYVFTAAKLIAPVMDKKDWEAGFDWVVETIKLDHEFLASKMEIEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGDFKSADLYADMAIRHNRYNAKALVNKGNCLFMSKEYACAKEIFLEAIGVEVDCVEAIYNLGLVNMHLGLANDSLQAFQKLHTIIPNNTEVIYHIANLYEVHTDNLSQASKWFNILLARVPS-----DPGILSRMGHIANKEEDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFEAAAQIQPIEVKWRLMVTSCYRRMGNYQKALELYEKIHSDYPDNLECLRYLVAICRDHDRPFQHFQQKLARLDRSTPGR 1308
            DA   ++ I++G PD Q+GFNL++CYYA+ +   MR+ F  L  IP+EGV +ED+E  DS   DE+ +       +  D L+AE++ R++ A  ++ TAAKL AP +DKKDW AG++WV++ +K DHE +AS+MEI KALH+LK K+F+KAIE LKAFEKKD  LKAMAATNL+F+YF+EGDF  AD +A +A+RH RYNAKALVNKGNCLF+  E   AKE++LEAIGVE DC+EAI+NLGLVN+ +G+ N++LQAF+KLH+I+P+NTEV+Y I NL+++   N   A+KWFNILL+   S     DPG+L+RMG I NK++D++QA+ YH ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE A+QIQP EVKWRLMVTSC+RRMG YQKAL LYE+IH DYPDNLECLRYLVAIC+D  + ++H QQ LA+L+R    +
Sbjct:  287 DAATTFEDIMEGMPDFQSGFNLIICYYAIGEHEKMRRGFTNLIGIPMEGVGEEDDE--DSKEGDESAVASASVVHLKKDGLKAEIRARQKRATDFILTAAKLCAPALDKKDWLAGYNWVIDAMKQDHESIASEMEICKALHFLKNKDFEKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDFAQADKFASLAVRHQRYNAKALVNKGNCLFVKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPSNTEVLYQIGNLHDM-MGNYRHAAKWFNILLSCFGSSKNVADPGVLARMGQIFNKDDDETQAFHYHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERASQIQPTEVKWRLMVTSCHRRMGAYQKALILYEQIHHDYPDNLECLRYLVAICKDLGQKYEHHQQALAKLERENAAK 728
[Close]
BLAST of mRNA_H-paniculata_contig2355.6363.1 vs. uniprot
Match: A0A067CHZ2_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHZ2_SAPPC)

HSP 1 Score: 543 bits (1400), Expect = 1.150e-183
Identity = 267/443 (60.27%), Postives = 344/443 (77.65%), Query Frame = 1 
Query:    1 DAIGQYDLILQGNPDHQAGFNLVLCYYALEDGLSMRKAFQRLAAIPIEGVTDEDEEEQDSNAAD--EAEMMGQMAPDKLRAELKKRKRDAEHYVFTAAKLIAPVMDKKDWEAGFDWVVETIKLDHEFLASKMEIEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGDFKSADLYADMAIRHNRYNAKALVNKGNCLFMSKEYACAKEIFLEAIGVEVDCVEAIYNLGLVNMHLGLANDSLQAFQKLHTIIPNNTEVIYHIANLYEVHTDNLSQASKWFNILLA-----RVPSDPGILSRMGHIANKEEDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFEAAAQIQPIEVKWRLMVTSCYRRMGNYQKALELYEKIHSDYPDNLECLRYLVAICRDHDRPFQHFQQKLARLDRSTPGR 1308
            DA   ++ I++GNP+ Q+GFNL++CYYA+ +   MRK FQ L  IP+EGV DED EE +    +         +  D L+AE++ R++ A  Y+  AAKL AP +DKKDW AG++WV++ +K DHE +AS+MEI KALH+LK K+FDKAIE LKAFEKKD  LKAMAATNL+F+YF+EGD+  AD +A +A+RH RYNAKALVNKGNCL++  E   AKE++LEAIGVE DC+EAI+NLGLVN+ +G+ N++LQAF+KLH+I+  NTEVIY IANL ++   N  QA KWFNILL+     +  +DPG+L+R+G I NK++D++QA+ +H ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE A+QIQP EVKWRLMVTSC+RRMG YQKAL LYE+IH DYP+NLECLRYLVAIC+D  + + H QQ LA+L+R    +
Sbjct:  300 DAATTFEDIMEGNPEFQSGFNLIICYYAIGEHEKMRKGFQNLIGIPMEGVGDEDLEEDEGKDGELKSPSSAVHLKKDGLKAEIRARQKKATEYILIAAKLCAPALDKKDWLAGYNWVIDAMKQDHEPIASEMEICKALHFLKNKDFDKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYNQADKFASLAVRHQRYNAKALVNKGNCLYVKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVSTNTEVIYQIANLNDM-MGNYRQAVKWFNILLSCFGSSKCVADPGVLARLGQIHNKDDDETQAFHFHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERASQIQPSEVKWRLMVTSCHRRMGAYQKALILYEQIHHDYPENLECLRYLVAICKDLGQKYDHHQQALAKLERENAAK 741
[Close]
BLAST of mRNA_H-paniculata_contig2355.6363.1 vs. uniprot
Match: A0A8J2S308_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S308_9STRA)

HSP 1 Score: 532 bits (1370), Expect = 2.690e-180
Identity = 267/446 (59.87%), Postives = 343/446 (76.91%), Query Frame = 1 
Query:    1 DAIGQYDLILQGNPDHQAGFNLVLCYYALEDGLSMRKAFQRLAAIPIEGVTDEDEEEQDSNAADEA----------EMMGQMAPDKLRAELKKRKRDAEHYVFTAAKLIAPVM--DKKDWE-AGFDWVVETIKLDHEFLASKMEIEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGDFKSADLYADMAIRHNRYNAKALVNKGNCLFMSKEYACAKEIFLEAIGVEVDCVEAIYNLGLVNMHLGLANDSLQAFQKLHTIIPNNTEVIYHIANLYEVHTDNLSQASKWFNILLARVPSDPGILSRMGHIANKEEDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFEAAAQIQPIEVKWRLMVTSCYRRMGNYQKALELYEKIHSDYPDNLECLRYLVAICRDHDRPFQHFQQKLARLDRST 1299
            DA+  Y+ I+ G+PD   GFNL+LCYYAL D   MR+ FQ+L +IP+E   D+D ++ D     E+          +     A D LR EL KR+++A  Y+ TAA+LIAP +  D  D + AG+ + +E++K DHE ++S+MEIE+AL Y++ KEF KAIE LKAFEK+DQHLKAMAATNL+FIYFLEGD +SAD YAD+A  H+RYNA+ALVNKGNCL +  +Y  AK+ +LEAIGVE DCVEAIY+LGLVN+ + L  ++LQAF+KLH ++PNN EVIY IA L+E     +  A KW+NIL+ RVPSDPG+L RMG + N+ +D++QA+ +H ESYRHYPV+LDVISWLGVWYVKSE+YEKAIH+FE AAQIQP EVKWRLMVTSCYRRMGNYQ+ALELYEK+H+++P+N ECLRYLVAIC+D  +P  H+Q KL+RLD+ T
Sbjct:  255 DAVQSYETIMGGDPDFHTGFNLILCYYALGDAEKMRRGFQKLISIPLE-ANDDDADDLDRALGSESKEEFKEETKHDKETAAAKDGLRHELLKREKEARTYMLTAARLIAPELRIDGDDSKMAGYQFCIESLKQDHESVSSEMEIERALKYMRVKEFGKAIEALKAFEKRDQHLKAMAATNLSFIYFLEGDIRSADKYADLAYEHDRYNARALVNKGNCLAVRGDYDTAKQFYLEAIGVEADCVEAIYDLGLVNLKMELWAEALQAFEKLHQVVPNNAEVIYQIAALHEAQ-GQVDVALKWYNILITRVPSDPGVLLRMGQLCNRNDDEAQAFHFHLESYRHYPVSLDVISWLGVWYVKSEMYEKAIHFFERAAQIQPKEVKWRLMVTSCYRRMGNYQRALELYEKVHAEHPENAECLRYLVAICKDLGQPCDHYQAKLSRLDQRT 698
[Close]
BLAST of mRNA_H-paniculata_contig2355.6363.1 vs. uniprot
Match: A0A397DF83_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DF83_9STRA)

HSP 1 Score: 522 bits (1345), Expect = 3.160e-180
Identity = 257/436 (58.94%), Postives = 331/436 (75.92%), Query Frame = 1 
Query:    1 DAIGQYDLILQGNPDHQAGFNLVLCYYALEDGLSMRKAFQRLAAIPIEGVTDEDEEEQDSNAADEAEMMGQMAPDKLRAELKKRKRDAEHYVFTAAKLIAPVMDKKDWEAGFDWVVETIKLDHEFLASKMEIEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGDFKSADLYADMAIRHNRYNAKALVNKGNCLFMSKEYACAKEIFLEAIGVEVDCVEAIYNLGLVNMHLGLANDSLQAFQKLHTIIPNNTEVIYHIANLYEVHTDNLSQASKWFNILL-----ARVPSDPGILSRMGHIANKEEDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFEAAAQIQPIEVKWRLMVTSCYRRMGNYQKALELYEKIHSDYPDNLECLRYLVAICRDHDRPFQHFQQKLARLDR 1293
            DA   ++ I++GNPD Q+GFNL++CYYA+ +   MR+                                       L+AE+++R++ A  ++ TAAKL AP +DKKDW AG++WV++ +K DHE +AS+MEI KALH+LK K+FDKAIE LKAFEKKD  LKAMAATNL+F+YF+EGD+  AD +A +A+RH RYNAKALVNKGNCL++  E   AKE++LEAIGVE DC+EAI+NLGLVN+ +G+ N++LQAF+KLH+I+P NTEV+Y IANL+++   N  QA+KWFNILL     A+  +DPG+L+RMG I NK++D++QA+ +H ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE AAQIQP EVKWRLMVTSC+RRMG YQKAL LYE+IH DYPDNLECLRYLVAIC+D  + ++H QQ LA+L+R
Sbjct:   33 DAATTFEDIMEGNPDFQSGFNLIICYYAIGEHEKMRRG--------------------------------------LKAEIRERQKKASEFILTAAKLCAPALDKKDWLAGYNWVIDAMKADHEPIASEMEICKALHFLKNKDFDKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYTQADKFASLAVRHQRYNAKALVNKGNCLYVKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPTNTEVLYQIANLHDM-MGNYRQAAKWFNILLSCFGSAKNIADPGVLARMGQIFNKDDDETQAFHFHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERAAQIQPTEVKWRLMVTSCHRRMGAYQKALVLYEQIHVDYPDNLECLRYLVAICKDLGQKYEHHQQALAKLER 429
[Close]
BLAST of mRNA_H-paniculata_contig2355.6363.1 vs. uniprot
Match: A0A1V9ZJ84_9STRA (Intraflagellar Transport Protein 88 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZJ84_9STRA)

HSP 1 Score: 527 bits (1357), Expect = 4.260e-177
Identity = 258/444 (58.11%), Postives = 343/444 (77.25%), Query Frame = 1 
Query:    1 DAIGQYDLILQGNPDHQAGFNLVLCYYALEDGLSMRKAFQRLAAIPIEGVTDEDEEEQDSNAADEAEMMGQ---MAPDKLRAELKKRKRDAEHYVFTAAKLIAPVMDKKDWEAGFDWVVETIKLDHEFLASKMEIEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGDFKSADLYADMAIRHNRYNAKALVNKGNCLFMSKEYACAKEIFLEAIGVEVDCVEAIYNLGLVNMHLGLANDSLQAFQKLHTIIPNNTEVIYHIANLYEVHTDNLSQASKWFNILLA-----RVPSDPGILSRMGHIANKEEDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFEAAAQIQPIEVKWRLMVTSCYRRMGNYQKALELYEKIHSDYPDNLECLRYLVAICRDHDRPFQHFQQKLARLDRSTPGR 1308
            DA   ++ I++GNPD Q+GFNL++CYYA+ +   MRK FQ L AIP++G+ D+D ++ +    D  +       +  D L+AE++ R++ A  Y+ TAAKL AP +DKKDW  G++WV++ +K DHE +AS+MEI KALH+LK KEFDKAIE LKAFEKKD  LKAMAATNL+F+YF+EGD+  AD +A +A+RH RYNAKALVNKGNCL++  E   AKE++LEAIGVE DC+EAI+NLGLVN+ +G+ N++LQAF+KLH+I+P+NTEV+Y IANL+++   N   + KWF+ILL+     +  +DPG+L+RMG I NK++D++QA+ +H ESYRH+PVNLDV      WYVKSELYEKAI +FE A+QIQP EVKWRLMVTSC+RRMG YQKAL LYE+IH DYP+NLECLRYLVAIC+D  + ++H QQ LA+L+R    +
Sbjct:  299 DAATTFEDIMEGNPDFQSGFNLIICYYAIGEHEKMRKGFQNLIAIPLDGIGDDDMDDDEGKETDGLKSPSSTVHLKKDGLKAEIRARQKKATEYILTAAKLCAPALDKKDWLTGYNWVIDAMKQDHEPIASEMEICKALHFLKNKEFDKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYNQADKFASLAVRHQRYNAKALVNKGNCLYVKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPSNTEVLYQIANLHDM-MGNYRASVKWFSILLSCFTSSKCVADPGVLARMGQIFNKDDDETQAFHFHIESYRHFPVNLDV------WYVKSELYEKAIQFFERASQIQPQEVKWRLMVTSCHRRMGAYQKALILYEQIHRDYPENLECLRYLVAICKDLGQKYEHHQQALAKLERENAAK 735
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2355.6363.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQU1_ECTSI1.610e-29187.87Intraflagellar transport particle protein n=2 Tax=... [more]
A0A835Z9Y6_9STRA5.100e-20565.05Intraflagellar transport particle protein n=1 Tax=... [more]
A0A024UCQ4_9STRA9.580e-18860.59Uncharacterized protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A418B6Z1_9STRA2.030e-18760.81Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485KY66_9STRA6.450e-18660.63Aste57867_13477 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0XD88_9STRA1.280e-18560.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067CHZ2_SAPPC1.150e-18360.27Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A8J2S308_9STRA2.690e-18059.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A397DF83_9STRA3.160e-18058.94Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1V9ZJ84_9STRA4.260e-17758.11Intraflagellar Transport Protein 88 n=1 Tax=Achlya... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2355contigH-paniculata_contig2355:17709..21444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score816.6
Seed ortholog evalue5.7e-234
Seed eggNOG ortholog2880.D7FQU1
Preferred nameIFT88
KEGG koko:K16474
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001578,GO:0001654,GO:0001655,GO:0001669,GO:0001822,GO:0001885,GO:0001886,GO:0001889,GO:0001944,GO:0002064,GO:0002080,GO:0002081,GO:0002119,GO:0002164,GO:0003002,GO:0003006,GO:0003007,GO:0003008,GO:0003158,GO:0003205,GO:0003206,GO:0003279,GO:0003382,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006950,GO:0006970,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007289,GO:0007290,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007605,GO:0007610,GO:0007626,GO:0008092,GO:0008104,GO:0008150,GO:0008283,GO:0008285,GO:0008544,GO:0008589,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009894,GO:0009952,GO:0009953,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010506,GO:0010646,GO:0010647,GO:0010970,GO:0012505,GO:0012506,GO:0014706,GO:0015630,GO:0016020,GO:0016043,GO:0016241,GO:0019222,GO:0019894,GO:0019953,GO:0021510,GO:0021511,GO:0021513,GO:0021537,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022611,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030031,GO:0030141,GO:0030154,GO:0030162,GO:0030182,GO:0030317,GO:0030323,GO:0030324,GO:0030326,GO:0030659,GO:0030667,GO:0030705,GO:0030855,GO:0030900,GO:0030990,GO:0030992,GO:0031016,GO:0031090,GO:0031122,GO:0031175,GO:0031323,GO:0031329,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0031984,GO:0032101,GO:0032103,GO:0032391,GO:0032421,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0034405,GO:0035051,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035640,GO:0035641,GO:0035735,GO:0035869,GO:0036064,GO:0036334,GO:0040011,GO:0040012,GO:0040017,GO:0040024,GO:0042073,GO:0042127,GO:0042481,GO:0042487,GO:0042490,GO:0042592,GO:0042692,GO:0042733,GO:0042995,GO:0043005,GO:0043053,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043567,GO:0043568,GO:0043583,GO:0044085,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045446,GO:0045595,GO:0045598,GO:0046907,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048645,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048732,GO:0048736,GO:0048738,GO:0048839,GO:0048853,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050877,GO:0050896,GO:0050920,GO:0050921,GO:0050954,GO:0051128,GO:0051146,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0055007,GO:0055115,GO:0060021,GO:0060091,GO:0060113,GO:0060119,GO:0060122,GO:0060173,GO:0060255,GO:0060259,GO:0060271,GO:0060322,GO:0060411,GO:0060426,GO:0060429,GO:0060491,GO:0060537,GO:0060541,GO:0060914,GO:0061008,GO:0061061,GO:0061351,GO:0065007,GO:0065008,GO:0070613,GO:0070925,GO:0071840,GO:0072001,GO:0072358,GO:0072359,GO:0080090,GO:0090102,GO:0097014,GO:0097223,GO:0097435,GO:0097458,GO:0097541,GO:0097542,GO:0097546,GO:0097708,GO:0097722,GO:0097730,GO:0097731,GO:0097732,GO:0097733,GO:0098588,GO:0098589,GO:0098791,GO:0098805,GO:0098862,GO:0099111,GO:0099503,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1903317,GO:1903929,GO:1905515,GO:2000026,GO:2000027,GO:2000785
EggNOG free text desc.non-motile cilium assembly
EggNOG OGsCOG0457@1,KOG2003@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons10
Model size1362
Cds size1362
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2355.6363.1prot_H-paniculata_contig2355.6363.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2355 17709..21444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.6700082-CDS-H-paniculata_contig2355:17708..178521622929669.6700082-CDS-H-paniculata_contig2355:17708..17852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 17709..17852 +
1691480959.8285007-CDS-H-paniculata_contig2355:17708..178521691480959.8285007-CDS-H-paniculata_contig2355:17708..17852Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 17709..17852 +
1622929669.6867225-CDS-H-paniculata_contig2355:18006..181311622929669.6867225-CDS-H-paniculata_contig2355:18006..18131Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 18007..18131 +
1691480959.8416038-CDS-H-paniculata_contig2355:18006..181311691480959.8416038-CDS-H-paniculata_contig2355:18006..18131Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 18007..18131 +
1622929669.703112-CDS-H-paniculata_contig2355:18377..185461622929669.703112-CDS-H-paniculata_contig2355:18377..18546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 18378..18546 +
1691480959.85007-CDS-H-paniculata_contig2355:18377..185461691480959.85007-CDS-H-paniculata_contig2355:18377..18546Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 18378..18546 +
1622929669.7201245-CDS-H-paniculata_contig2355:18988..190791622929669.7201245-CDS-H-paniculata_contig2355:18988..19079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 18989..19079 +
1691480959.8578794-CDS-H-paniculata_contig2355:18988..190791691480959.8578794-CDS-H-paniculata_contig2355:18988..19079Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 18989..19079 +
1622929669.7347374-CDS-H-paniculata_contig2355:19311..194631622929669.7347374-CDS-H-paniculata_contig2355:19311..19463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 19312..19463 +
1691480959.869384-CDS-H-paniculata_contig2355:19311..194631691480959.869384-CDS-H-paniculata_contig2355:19311..19463Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 19312..19463 +
1622929669.7473762-CDS-H-paniculata_contig2355:19776..199231622929669.7473762-CDS-H-paniculata_contig2355:19776..19923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 19777..19923 +
1691480959.880402-CDS-H-paniculata_contig2355:19776..199231691480959.880402-CDS-H-paniculata_contig2355:19776..19923Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 19777..19923 +
1622929669.7632887-CDS-H-paniculata_contig2355:20199..203481622929669.7632887-CDS-H-paniculata_contig2355:20199..20348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 20200..20348 +
1691480959.8902013-CDS-H-paniculata_contig2355:20199..203481691480959.8902013-CDS-H-paniculata_contig2355:20199..20348Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 20200..20348 +
1622929669.7801232-CDS-H-paniculata_contig2355:20623..207471622929669.7801232-CDS-H-paniculata_contig2355:20623..20747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 20624..20747 +
1691480959.8987458-CDS-H-paniculata_contig2355:20623..207471691480959.8987458-CDS-H-paniculata_contig2355:20623..20747Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 20624..20747 +
1622929669.7940671-CDS-H-paniculata_contig2355:20892..210011622929669.7940671-CDS-H-paniculata_contig2355:20892..21001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 20893..21001 +
1691480959.907971-CDS-H-paniculata_contig2355:20892..210011691480959.907971-CDS-H-paniculata_contig2355:20892..21001Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 20893..21001 +
1622929669.8119078-CDS-H-paniculata_contig2355:21292..214441622929669.8119078-CDS-H-paniculata_contig2355:21292..21444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 21293..21444 +
1691480959.918499-CDS-H-paniculata_contig2355:21292..214441691480959.918499-CDS-H-paniculata_contig2355:21292..21444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2355 21293..21444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2355.6363.1

>prot_H-paniculata_contig2355.6363.1 ID=prot_H-paniculata_contig2355.6363.1|Name=mRNA_H-paniculata_contig2355.6363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=454bp
DAIGQYDLILQGNPDHQAGFNLVLCYYALEDGLSMRKAFQRLAAIPIEGV
TDEDEEEQDSNAADEAEMMGQMAPDKLRAELKKRKRDAEHYVFTAAKLIA
PVMDKKDWEAGFDWVVETIKLDHEFLASKMEIEKALHYLKTKEFDKAIEH
LKAFEKKDQHLKAMAATNLAFIYFLEGDFKSADLYADMAIRHNRYNAKAL
VNKGNCLFMSKEYACAKEIFLEAIGVEVDCVEAIYNLGLVNMHLGLANDS
LQAFQKLHTIIPNNTEVIYHIANLYEVHTDNLSQASKWFNILLARVPSDP
GILSRMGHIANKEEDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELY
EKAIHYFEAAAQIQPIEVKWRLMVTSCYRRMGNYQKALELYEKIHSDYPD
NLECLRYLVAICRDHDRPFQHFQQKLARLDRSTPGRGPPITVSEVGQGFW
WLL*
back to top

mRNA from alignment at H-paniculata_contig2355:17709..21444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2355.6363.1 ID=mRNA_H-paniculata_contig2355.6363.1|Name=mRNA_H-paniculata_contig2355.6363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3736bp|location=Sequence derived from alignment at H-paniculata_contig2355:17709..21444+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGCAATCGGACAATACGACTTGATTTTGCAAGGAAACCCAGATCACCA
AGCAGGCTTCAATCTTGTTCTCTGCTACTACGCCTTGGAAGACGGGCTTT
CGATGAGAAAGGCGTTTCAGCGACTTGCAGCTATCCCTATCGAGGTAAGA
AGTGCCTTCTGGGCGGTTGAATCTAATACTGTATTTCCCCTTCAGATAAG
GCCAATCCAAACAGCTGGTTCTCAAATGTGTCGCAGTTTTTCATAAGAAT
TTGCTGTGTTGATCTATGTTTCAATTGTTACTGATATCTTGATTTCAGGG
CGTTACGGACGAGGATGAAGAGGAGCAAGACTCTAATGCTGCAGATGAGG
CAGAGATGATGGGACAAATGGCACCGGATAAATTGCGGGCAGAACTGAAG
AAGCGCAAGAGAGATGCAGAACAGTGAGAGTTAGACATCAGAACAATGTG
TGTGTGGTCGATATTGTTATTGCCCAAGATGAAGCCATGCGGGGTCTCAT
TAAATTCCCCAGGTGACGCAATTAGCTAAGTTTTTTTTCATACATGTAAT
AGTTACAAGAAACACATTGAGTGTCGTTGTAGAGCTCATCTCAAAAACCA
ATTTATGCTGTGACCTGCCCGACCCGGTTCGCTCGAGTGATTTTCTCGTC
GAATTTTCCCTGTATGCAGCTATGTCTTTACTGCAGCAAAGCTTATTGCT
CCGGTGATGGATAAGAAAGATTGGGAAGCAGGGTTTGACTGGGTGGTAGA
AACTATAAAGCTGGACCACGAGTTCCTTGCGTCGAAGATGGAAATTGAGA
AAGCTCTGCATTACCTCAAGACTAAAGAATTCGACAAGGTGATCCGTCAT
GTTCCCAGTTTGTTTTTCAAGCGTTCACCTTATTGTTATGTTGAAATACT
TGAAATATTTGCATTGTTTATGTCTACCGATAGCGTAGCAATCCGGTGGT
GTTGAAACTCGGATAGCTTGGTCGGAGCCCTCAGCATCACCGTTTGTTAA
AACAAGAGAGATTGATCACTGAACCCAGGAGGCGCAGTCCGCATTGATCA
TACCACTTGGATCAGTAATACTTCTAAAGTTGCAGCAGCGATAACGATGA
CGAAAACGTAGTGTTCGGTGAAGTGGGTGCAGCTTTGATACCGACATCAC
TACCTATGCCGAACACTACATGCTGTGTTCAGATTTGCGCACATATATTT
CCCAACTTGGTTCACAGCGAGTATCGAAATCATTTCTAGCGTTTCTATCG
TTTCTATCGTTGCAAACGTTGCAATCGTAGGCGATCGAACATTTGAAGGC
TTTCGAGAAGAAGGATCAACACCTCAAGGCGATGGCAGCTACAAACCTCG
CCTTCATCTACTTTTTGGAGGGTGAGCATTGTTTGTGTTTGTAGCCTCGC
TTGCTCCCATGCTAGATATCCTCCATTTTCTTTGCTTCTTTGCCAATGAC
GTGTCGATCGATACCCATTGAGTTCGAGAGTTGGAGTCAAAATGTATGTT
TGACAAGTATGCGAGCACCCCAAGCTTCTATCTGTCTTGCCATGCGACAG
CTTTCCGTCGGTTCGTGTTTGTGAGGGTGTTGGCGTTTGCGGTTTGAACA
CAGGTGATTTCAAGAGCGCGGACCTGTATGCAGATATGGCAATCAGACAC
AACCGGTATAATGCCAAGGCGCTCGTCAACAAAGGCAATTGTCTGTTTAT
GTCAAAGGAATACGCTTGTGCGAAGGAGATATTTCTTGAGGCGATCGGAG
TTGAGGTGATCTAGCTGCCACCGGATAAAGCCTCCATGCAGACGGCAAAA
CAAAACAAGTAGTACAGGTTGTCAACGCTGAGACGCCGCACACACCAGAG
TACAGTAGCTTTCAAATGTTGTGGGTGTGGGTCAAGCATTTGGAAAATAG
CACTCTATTCTTGATACCCTCGCGCACGTGTCATACTCAGAGGGGATACG
GGTATCGGCTCTGAAGTCCGTTGCATCAGCTTCATCAGTCGTTGTGTCTT
TTTATATTATCCTCGACCCTCACGAGTTGAGTTCCGCACGCGCCCGTCCC
TATTCCTCAAACCTCCAGGTGGATTGCGTAGAGGCGATATACAACCTGGG
GCTAGTCAACATGCATTTGGGGCTGGCGAATGACTCCCTCCAGGCGTTTC
AAAAACTTCACACGATTATCCCAAACAACACCGAGGTCATCTATCACATC
GCCAATTTGTATGAGGTGACTGGCTCGCAACTAGGATTCTCTCTACTCTC
TGAACTTCGTGTAGCAGAGGTAGTTGTCTAAATACGGCTGCGTAAGATAT
TTTTGCCGGGGGAATACTTGTCGTTCGTTGTATGATTGTTGAGCTCTTCA
GAGAGGCCATCATTAACATCTTTCGCGAATAGTGTTGACGCGCTGAGTGA
TGGATTTTCCCTACTCCTACGTTCGCTGGTGCTGGCTACTCACTAATTGT
CAATTAAACCGGGATGTCTGTGTCGCCTCCACTGATTCAAGGTGCACACG
GATAATCTATCCCAGGCATCGAAGTGGTTCAATATTTTATTGGCCCGAGT
TCCTAGCGACCCGGGTATCTTGAGTCGGATGGGCCACATTGCGAACAAAG
AAGAAGATGACAGTCAAGCCTACTTTTATCACAAAGAGAGGTATGTGGAG
CTCTATTCCCATTTGTGCAAATAGCACCAATCGAGCTATGCTGCGACTGT
TTAGATTTGGATGACTATATTTCTTCTTCGGGCCTGCGGCAGCCATTGTG
CACCCACTGACGGTTCATGGTAGTCTGGGAAATCGTAATTTGTCAATTTG
CGGTGACACTGAAGAACGATTCATTCCACAGAAGGTACAAATCGTCCACG
ATGGCGAAGGTACACAGCTCTCCGTATCTCACTTGATTCAGTTGAAACCC
CGATTTGCCGAGCAGCTATCGACACTACCCGGTAAACTTGGACGTCATCT
CCTGGCTGGGAGTGTGGTACGTCAAAAGCGAGTTGTACGAGAAGGCCATC
CACTATTTTGAAGCAGCTGCGCAAATCCAACCCATTGAGGTAAGAACCAG
CTGCTGCACATATTCAAAGGATGAACCACAATTTCACCCAATTGACAAAT
TTTACCAAATGAGTCCGTTTTCGATGTCTCGTGGCACTATCTTCCTCCAA
CGTTAGTATGCGTGTTTTGGCCCCCACTCTGAAGGTCAAGTGGCGCTTGA
TGGTAACCAGCTGCTACCGTCGAATGGGCAACTATCAGAAGGCGCTTGAA
CTCTACGAAAAAATTCACAGTGACTACCCCGATAACCTTGAATGTAAGTA
CATGAGCAGCTGCCTAGTGTGCTTCAGGATACCTACACACGGGCAAGTAG
TTCGCCTGGTGCAAACTGAACATTTTCGTATTTGCCTAGCACTAATTTTG
TCGGCGATCGGCGTTCTCTGTCAACGCACTATCGTCTGCCGTAATCACCA
TGATTTGATGGAAAGCTATGGACTCAGTAACCAGCAAAAAAGCTGCCTAC
AATAGTACACTACGTTTTATTACCCGAAAACCAGTAACATATTCTGCCAG
GCATCAAGCAATGAATTCTTCTACCAATTACCAGGCCTTCGCTACCTGGT
CGCTATCTGCCGAGATCACGATCGACCGTTTCAACACTTTCAGCAAAAGC
TAGCACGACTTGATAGGTCCACGCCTGGAAGAGGACCACCCATCACGGTC
TCAGAGGTCGGTCAAGGATTTTGGTGGTTGCTCTAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2355:17709..21444+

>mRNA_H-paniculata_contig2355.6363.1 ID=mRNA_H-paniculata_contig2355.6363.1|Name=mRNA_H-paniculata_contig2355.6363.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2724bp|location=Sequence derived from alignment at H-paniculata_contig2355:17709..21444+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGCAATCGGACAATACGACTTGATTTTGCAAGGAAACCCAGATCACCA
AGCAGGCTTCAATCTTGTTCTCTGCTACTACGCCTTGGAAGACGGGCTTT
CGATGAGAAAGGCGTTTCAGCGACTTGCAGCTATCCCTATCGAGGACGCA
ATCGGACAATACGACTTGATTTTGCAAGGAAACCCAGATCACCAAGCAGG
CTTCAATCTTGTTCTCTGCTACTACGCCTTGGAAGACGGGCTTTCGATGA
GAAAGGCGTTTCAGCGACTTGCAGCTATCCCTATCGAGGGCGTTACGGAC
GAGGATGAAGAGGAGCAAGACTCTAATGCTGCAGATGAGGCAGAGATGAT
GGGACAAATGGCACCGGATAAATTGCGGGCAGAACTGAAGAAGCGCAAGA
GAGATGCAGAACAGGCGTTACGGACGAGGATGAAGAGGAGCAAGACTCTA
ATGCTGCAGATGAGGCAGAGATGATGGGACAAATGGCACCGGATAAATTG
CGGGCAGAACTGAAGAAGCGCAAGAGAGATGCAGAACACTATGTCTTTAC
TGCAGCAAAGCTTATTGCTCCGGTGATGGATAAGAAAGATTGGGAAGCAG
GGTTTGACTGGGTGGTAGAAACTATAAAGCTGGACCACGAGTTCCTTGCG
TCGAAGATGGAAATTGAGAAAGCTCTGCATTACCTCAAGACTAAAGAATT
CGACAAGCTATGTCTTTACTGCAGCAAAGCTTATTGCTCCGGTGATGGAT
AAGAAAGATTGGGAAGCAGGGTTTGACTGGGTGGTAGAAACTATAAAGCT
GGACCACGAGTTCCTTGCGTCGAAGATGGAAATTGAGAAAGCTCTGCATT
ACCTCAAGACTAAAGAATTCGACAAGGCGATCGAACATTTGAAGGCTTTC
GAGAAGAAGGATCAACACCTCAAGGCGATGGCAGCTACAAACCTCGCCTT
CATCTACTTTTTGGAGGGCGATCGAACATTTGAAGGCTTTCGAGAAGAAG
GATCAACACCTCAAGGCGATGGCAGCTACAAACCTCGCCTTCATCTACTT
TTTGGAGGGTGATTTCAAGAGCGCGGACCTGTATGCAGATATGGCAATCA
GACACAACCGGTATAATGCCAAGGCGCTCGTCAACAAAGGCAATTGTCTG
TTTATGTCAAAGGAATACGCTTGTGCGAAGGAGATATTTCTTGAGGCGAT
CGGAGTTGAGGTGATTTCAAGAGCGCGGACCTGTATGCAGATATGGCAAT
CAGACACAACCGGTATAATGCCAAGGCGCTCGTCAACAAAGGCAATTGTC
TGTTTATGTCAAAGGAATACGCTTGTGCGAAGGAGATATTTCTTGAGGCG
ATCGGAGTTGAGGTGGATTGCGTAGAGGCGATATACAACCTGGGGCTAGT
CAACATGCATTTGGGGCTGGCGAATGACTCCCTCCAGGCGTTTCAAAAAC
TTCACACGATTATCCCAAACAACACCGAGGTCATCTATCACATCGCCAAT
TTGTATGAGGTGGATTGCGTAGAGGCGATATACAACCTGGGGCTAGTCAA
CATGCATTTGGGGCTGGCGAATGACTCCCTCCAGGCGTTTCAAAAACTTC
ACACGATTATCCCAAACAACACCGAGGTCATCTATCACATCGCCAATTTG
TATGAGGTGCACACGGATAATCTATCCCAGGCATCGAAGTGGTTCAATAT
TTTATTGGCCCGAGTTCCTAGCGACCCGGGTATCTTGAGTCGGATGGGCC
ACATTGCGAACAAAGAAGAAGATGACAGTCAAGCCTACTTTTATCACAAA
GAGAGGTGCACACGGATAATCTATCCCAGGCATCGAAGTGGTTCAATATT
TTATTGGCCCGAGTTCCTAGCGACCCGGGTATCTTGAGTCGGATGGGCCA
CATTGCGAACAAAGAAGAAGATGACAGTCAAGCCTACTTTTATCACAAAG
AGAGCTATCGACACTACCCGGTAAACTTGGACGTCATCTCCTGGCTGGGA
GTGTGGTACGTCAAAAGCGAGTTGTACGAGAAGGCCATCCACTATTTTGA
AGCAGCTGCGCAAATCCAACCCATTGAGCTATCGACACTACCCGGTAAAC
TTGGACGTCATCTCCTGGCTGGGAGTGTGGTACGTCAAAAGCGAGTTGTA
CGAGAAGGCCATCCACTATTTTGAAGCAGCTGCGCAAATCCAACCCATTG
AGGTCAAGTGGCGCTTGATGGTAACCAGCTGCTACCGTCGAATGGGCAAC
TATCAGAAGGCGCTTGAACTCTACGAAAAAATTCACAGTGACTACCCCGA
TAACCTTGAATGTCAAGTGGCGCTTGATGGTAACCAGCTGCTACCGTCGA
ATGGGCAACTATCAGAAGGCGCTTGAACTCTACGAAAAAATTCACAGTGA
CTACCCCGATAACCTTGAATGCCTTCGCTACCTGGTCGCTATCTGCCGAG
ATCACGATCGACCGTTTCAACACTTTCAGCAAAAGCTAGCACGACTTGAT
AGGTCCACGCCTGGAAGAGGACCACCCATCACGGTCTCAGAGGTCGGTCA
AGGATTTTGGTGGTTGCTCTAGGCCTTCGCTACCTGGTCGCTATCTGCCG
AGATCACGATCGACCGTTTCAACACTTTCAGCAAAAGCTAGCACGACTTG
ATAGGTCCACGCCTGGAAGAGGACCACCCATCACGGTCTCAGAGGTCGGT
CAAGGATTTTGGTGGTTGCTCTAG
back to top