mRNA_H-paniculata_contig23545.6359.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23545.6359.1
Unique NamemRNA_H-paniculata_contig23545.6359.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23545.6359.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.060e-11
Identity = 27/36 (75.00%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QGISFNDHYARGVLCVGIPYPNFGAPLVKAKMRFND 108
            +GISFNDHYARGVLCVGIPYPN G P + AK  +ND
Sbjct:  434 EGISFNDHYARGVLCVGIPYPNLGDPKIVAKKCYND 469
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BLAST of mRNA_H-paniculata_contig23545.6359.1 vs. uniprot
Match: A0A2C6LBW8_9APIC (Helicase (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6LBW8_9APIC)

HSP 1 Score: 62.0 bits (149), Expect = 3.280e-10
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QGISFNDHYARGVLCVGIPYPNFGAPLVKAKMRFND 108
            +G+SFND Y RGV+CVGIPYP FG P V+ KM+FND
Sbjct:  941 EGLSFNDDYCRGVICVGIPYPAFGDPKVEQKMKFND 976
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BLAST of mRNA_H-paniculata_contig23545.6359.1 vs. uniprot
Match: F0VI35_NEOCL (Helicase, putative n=1 Tax=Neospora caninum (strain Liverpool) TaxID=572307 RepID=F0VI35_NEOCL)

HSP 1 Score: 60.1 bits (144), Expect = 1.560e-9
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QGISFNDHYARGVLCVGIPYPNFGAPLVKAKMRFND 108
            +G+SFND Y RGV+C+GIPYP F  P +++KMRFND
Sbjct: 1876 EGLSFNDDYCRGVICIGIPYPAFRDPKIESKMRFND 1911
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BLAST of mRNA_H-paniculata_contig23545.6359.1 vs. uniprot
Match: A0A2A9MPK5_9APIC (Helicase ATP-binding domain-containing protein n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MPK5_9APIC)

HSP 1 Score: 58.9 bits (141), Expect = 4.000e-9
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 QGISFNDHYARGVLCVGIPYPNFGAPLVKAKMRFND 108
            +G+SFND Y RGV+CVGIPYP F  P +++KM+FND
Sbjct: 1881 EGLSFNDAYCRGVICVGIPYPAFRDPKIESKMKFND 1916
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BLAST of mRNA_H-paniculata_contig23545.6359.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.020e-8
Identity = 24/32 (75.00%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   13 FNDHYARGVLCVGIPYPNFGAPLVKAKMRFND 108
            FNDHYARGVLCVGIPYPN G P + AK  +ND
Sbjct: 1131 FNDHYARGVLCVGIPYPNLGDPKIVAKKCYND 1162
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BLAST of mRNA_H-paniculata_contig23545.6359.1 vs. uniprot
Match: B6KJM8_TOXGV (ATP-dependent DNA helicase n=15 Tax=Toxoplasma gondii TaxID=5811 RepID=B6KJM8_TOXGV)

HSP 1 Score: 57.0 bits (136), Expect = 1.910e-8
Identity = 22/36 (61.11%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 QGISFNDHYARGVLCVGIPYPNFGAPLVKAKMRFND 108
            +G+SFND Y RGVLC+GIPYP    P +++KM+FND
Sbjct: 1697 EGLSFNDAYCRGVLCIGIPYPALRDPKIESKMKFND 1732
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BLAST of mRNA_H-paniculata_contig23545.6359.1 vs. uniprot
Match: A0A7S1YN99_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YN99_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 8.870e-8
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 QGISFNDHYARGVLCVGIPYPNFGAPLVKAKMRFND 108
            +GISFND +ARGV+CVGIPYPN     +KAK  +ND
Sbjct:  135 EGISFNDDFARGVVCVGIPYPNSFDKAIKAKKNYND 170
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BLAST of mRNA_H-paniculata_contig23545.6359.1 vs. uniprot
Match: A0A7S4EN76_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EN76_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.250e-7
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 QGISFNDHYARGVLCVGIPYPNFGAPLVKAKMRFND 108
            +GISFND YAR VLC+G+PYPN+    VKAK  +ND
Sbjct: 1019 EGISFNDAYARAVLCIGMPYPNYKDRGVKAKQSYND 1054
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BLAST of mRNA_H-paniculata_contig23545.6359.1 vs. uniprot
Match: A0A151ZGG8_9MYCE (DNA helicase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZGG8_9MYCE)

HSP 1 Score: 51.2 bits (121), Expect = 2.100e-6
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 QGISFNDHYARGVLCVGIPYPNFGAPLVKAKMRFND 108
            +GI F+D YARGV+ VGIPYPN G   VK K  +ND
Sbjct:  857 EGIDFSDEYARGVIVVGIPYPNLGDIKVKLKKAYND 892
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BLAST of mRNA_H-paniculata_contig23545.6359.1 vs. uniprot
Match: A0A7S0C0Q2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0Q2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 2.900e-6
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 QGISFNDHYARGVLCVGIPYPNFGAPLVKAKMRFND 108
            +GISFND  ARGV+CVG+PYPN     V AK  +ND
Sbjct:  108 EGISFNDDNARGVICVGLPYPNAKDRAVSAKKAYND 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23545.6359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LEJ0_ECTSI5.060e-1175.00Helicase ATP-binding domain-containing protein n=1... [more]
A0A2C6LBW8_9APIC3.280e-1069.44Helicase (Fragment) n=1 Tax=Cystoisospora suis Tax... [more]
F0VI35_NEOCL1.560e-963.89Helicase, putative n=1 Tax=Neospora caninum (strai... [more]
A0A2A9MPK5_9APIC4.000e-963.89Helicase ATP-binding domain-containing protein n=1... [more]
A0A6H5JZN2_9PHAE1.020e-875.00Helicase ATP-binding domain-containing protein n=1... [more]
B6KJM8_TOXGV1.910e-861.11ATP-dependent DNA helicase n=15 Tax=Toxoplasma gon... [more]
A0A7S1YN99_9STRA8.870e-863.89Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S4EN76_9STRA1.250e-763.89Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A151ZGG8_9MYCE2.100e-661.11DNA helicase n=1 Tax=Tieghemostelium lacteum TaxID... [more]
A0A7S0C0Q2_9STRA2.900e-661.11Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23545contigH-paniculata_contig23545:3240..3347 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue5.9e-09
Seed eggNOG ortholog2880.D8LEJ0
KEGG koko:K11136,ko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons1
Model size108
Cds size108
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.1609452-CDS-H-paniculata_contig23545:3239..33471622929669.1609452-CDS-H-paniculata_contig23545:3239..3347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23545 3240..3347 -
1691480959.614908-CDS-H-paniculata_contig23545:3239..33471691480959.614908-CDS-H-paniculata_contig23545:3239..3347Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23545 3240..3347 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23545.6359.1prot_H-paniculata_contig23545.6359.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23545 3240..3347 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23545.6359.1

>prot_H-paniculata_contig23545.6359.1 ID=prot_H-paniculata_contig23545.6359.1|Name=mRNA_H-paniculata_contig23545.6359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=36bp
QGISFNDHYARGVLCVGIPYPNFGAPLVKAKMRFND
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mRNA from alignment at H-paniculata_contig23545:3240..3347-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23545.6359.1 ID=mRNA_H-paniculata_contig23545.6359.1|Name=mRNA_H-paniculata_contig23545.6359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=108bp|location=Sequence derived from alignment at H-paniculata_contig23545:3240..3347- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTATCAGCTTCAATGATCACTATGCCCGGGGAGTACTGTGTGTCGG
TATCCCTTATCCCAACTTCGGGGCACCCCTCGTGAAGGCAAAAATGAGAT
TCAACGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig23545:3240..3347-

>mRNA_H-paniculata_contig23545.6359.1 ID=mRNA_H-paniculata_contig23545.6359.1|Name=mRNA_H-paniculata_contig23545.6359.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at H-paniculata_contig23545:3240..3347- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGTATCAGCTTCAATGATCACTATGCCCGGGGAGTACTGTGTGTCGG
TATCCCTTATCCCAACTTCGGGGCACCCCTCGTGAAGGCAAAAATGAGAT
TCAACGACCAGGGTATCAGCTTCAATGATCACTATGCCCGGGGAGTACTG
TGTGTCGGTATCCCTTATCCCAACTTCGGGGCACCCCTCGTGAAGGCAAA
AATGAGATTCAACGAC
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