mRNA_H-paniculata_contig23545.6358.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig23545.6358.1
Unique NamemRNA_H-paniculata_contig23545.6358.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig23545.6358.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.320e-19
Identity = 50/102 (49.02%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:   94 LSGSEWYDQQAFRALNQALGRCIRHIHDYGVVCLVDSRI-AGKTHN---LAKWMRNYVSEFDFEAEMQQTIRQLFEVAPAYVQGRKDEAARMRAASAEERRR 387
            LSGS WY Q+A+RA NQALGRCIRH++DYGV+CL+D RI AG+  +   LAKWMR+   ++     +  TI Q F  AP +V+  K+ A  +R  ++  RRR
Sbjct: 1354 LSGSNWYAQEAYRAQNQALGRCIRHVYDYGVICLIDERIRAGEWKHVKFLAKWMRDLRGDYPSFEHVVDTIDQFFASAPGFVREEKERAVVLRQQASVRRRR 1455
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BLAST of mRNA_H-paniculata_contig23545.6358.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 4.370e-19
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:   94 LSGSEWYDQQAFRALNQALGRCIRHIHDYGVVCLVDSRI-AGKTHN---LAKWMRNYVSEFDFEAEMQQTIRQLFEVAPAYVQGRKDEAARMRAASAEERRR 387
            LSGS WY Q+A+RA NQALGRCIRH++DYGVVCL+D RI AG+  +   LAKWMR+   ++     +  T+ Q F  AP +V+  K+ AA +R  ++  RRR
Sbjct:  657 LSGSNWYAQEAYRAQNQALGRCIRHVYDYGVVCLIDERIRAGEWKHVKFLAKWMRDLRGDYPSFEHVVGTMDQFFASAPGFVREEKERAAVLRHQASVRRRR 758
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BLAST of mRNA_H-paniculata_contig23545.6358.1 vs. uniprot
Match: H3G7G4_PHYRM (HELICc2 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G7G4_PHYRM)

HSP 1 Score: 81.6 bits (200), Expect = 7.140e-16
Identity = 40/74 (54.05%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:   94 LSGSEWYDQQAFRALNQALGRCIRHIHDYGVVCLVDSRIAGKTH--NLAKWMRNYVSEFDFEAEMQQTIRQLFE 309
            ++GS WY  QAFRALNQALGRCIRH  DYG V L+DSR  G  H  +L+KWMR YV EF    +      + F+
Sbjct:  212 MNGSWWYKLQAFRALNQALGRCIRHRRDYGAVILIDSRHRGNMHGNSLSKWMRPYVQEFRLSEDSNPLFAEFFQ 285
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BLAST of mRNA_H-paniculata_contig23545.6358.1 vs. uniprot
Match: A0A7S0T070_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0T070_9CHLO)

HSP 1 Score: 82.0 bits (201), Expect = 1.490e-15
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   94 LSGSEWYDQQAFRALNQALGRCIRHIHDYGVVCLVDSRIA---GKTHN---LAKWMRNYVSEFDFEAEMQQTIRQLFE 309
            LSG EWY  QAFRA NQALGRCIRH HDY  + LVD+R        HN   ++KWMRN+V  F    E + T+++ FE
Sbjct:  292 LSGGEWYQHQAFRAYNQALGRCIRHQHDYACIFLVDARFCMHNEAAHNRSMVSKWMRNFVQYFTHPQESRGTVKEFFE 369
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BLAST of mRNA_H-paniculata_contig23545.6358.1 vs. uniprot
Match: A0A6G0XE08_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XE08_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 4.740e-15
Identity = 39/71 (54.93%), Postives = 47/71 (66.20%), Query Frame = 1 
Query:  100 GSEWYDQQAFRALNQALGRCIRHIHDYGVVCLVDSRIAGK--THNLAKWMRNYVSEFDFEAEMQQTIRQLF 306
            G  WY+ QAFRALNQALGRCIRH  DYG + LVDSR  G   TH L+KW R +  EF+   E  +++R  F
Sbjct:  782 GRVWYEHQAFRALNQALGRCIRHRLDYGAILLVDSRYQGDRYTHQLSKWTRGHCQEFEKTEEALESVRDFF 852
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BLAST of mRNA_H-paniculata_contig23545.6358.1 vs. uniprot
Match: A0A6G0SKS7_9STRA (Fanconi anemia group J n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0SKS7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.180e-14
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   79 VKCRALSGSEWYDQQAFRALNQALGRCIRHIHDYGVVCLVDSRIAGKTH--NLAKWMRNYVSEF 264
            V  + ++GS WY  QAFRALNQALGRCIRH  DYG V L+DSR  G +H  +L+KWMR +V EF
Sbjct:  531 VNRKLVNGSWWYKLQAFRALNQALGRCIRHRRDYGAVILIDSRHRGNSHGNSLSKWMRPHVQEF 594
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BLAST of mRNA_H-paniculata_contig23545.6358.1 vs. uniprot
Match: A0A8K1C7G1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C7G1_PYTOL)

HSP 1 Score: 79.7 bits (195), Expect = 1.210e-14
Identity = 39/73 (53.42%), Postives = 50/73 (68.49%), Query Frame = 1 
Query:   67 ETTGVKCRALSGSEWYDQQAFRALNQALGRCIRHIHDYGVVCLVDSRIAGKTH--NLAKWMRNYVSEFDFEAE 279
            E + V  + +SGS WY  QAFRALNQALGRCIRH  DYG + L+DSR   + H  +L+KW+R +V EF+   E
Sbjct:  803 EKSAVDRKLVSGSVWYQLQAFRALNQALGRCIRHRQDYGAILLIDSRYRFQAHTKSLSKWIRPFVREFEHAEE 875
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BLAST of mRNA_H-paniculata_contig23545.6358.1 vs. uniprot
Match: A0A6A3FXS3_9STRA (Fanconi anemia group J n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FXS3_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.220e-14
Identity = 39/64 (60.94%), Postives = 47/64 (73.44%), Query Frame = 1 
Query:   79 VKCRALSGSEWYDQQAFRALNQALGRCIRHIHDYGVVCLVDSRIAGKTH--NLAKWMRNYVSEF 264
            V  + ++GS WY  QAFRALNQALGRCIRH  DYG V L+DSR  G +H  +L+KWMR +V EF
Sbjct:  863 VNRKLVNGSWWYKLQAFRALNQALGRCIRHRRDYGAVILIDSRHRGNSHGNSLSKWMRPHVQEF 926
[Close]
BLAST of mRNA_H-paniculata_contig23545.6358.1 vs. uniprot
Match: A0A662XHA0_9STRA (Helicase ATP-binding domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XHA0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.630e-14
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:   94 LSGSEWYDQQAFRALNQALGRCIRHIHDYGVVCLVDSRIAGKTH--NLAKWMRNYVSEFDFEAEMQQTIRQLFE 309
            ++GS WY  QAFRALNQALGRCIRH  DYG V L+DSR     H  +L+KWMR +V EF++  +      + F+
Sbjct:  761 VNGSLWYKLQAFRALNQALGRCIRHRRDYGAVVLLDSRHRSNRHAKSLSKWMRPFVQEFEYSEQCNALFAEFFQ 834
[Close]
BLAST of mRNA_H-paniculata_contig23545.6358.1 vs. uniprot
Match: A0A662XIN0_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XIN0_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.670e-14
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:   94 LSGSEWYDQQAFRALNQALGRCIRHIHDYGVVCLVDSRIAGKTH--NLAKWMRNYVSEFDFEAEMQQTIRQLFE 309
            ++GS WY  QAFRALNQALGRCIRH  DYG V L+DSR     H  +L+KWMR +V EF++  +      + F+
Sbjct: 1025 VNGSLWYKLQAFRALNQALGRCIRHRRDYGAVVLLDSRHRSNRHAKSLSKWMRPFVQEFEYSEQCNALFAEFFQ 1098
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig23545.6358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZN2_9PHAE3.320e-1949.02Helicase ATP-binding domain-containing protein n=1... [more]
D8LEJ0_ECTSI4.370e-1950.00Helicase ATP-binding domain-containing protein n=1... [more]
H3G7G4_PHYRM7.140e-1654.05HELICc2 domain-containing protein n=1 Tax=Phytopht... [more]
A0A7S0T070_9CHLO1.490e-1552.56Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A6G0XE08_9STRA4.740e-1554.93Helicase ATP-binding domain-containing protein n=1... [more]
A0A6G0SKS7_9STRA1.180e-1460.94Fanconi anemia group J n=2 Tax=Phytophthora fragar... [more]
A0A8K1C7G1_PYTOL1.210e-1453.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3FXS3_9STRA1.220e-1460.94Fanconi anemia group J n=3 Tax=Phytophthora fragar... [more]
A0A662XHA0_9STRA1.630e-1451.35Helicase ATP-binding domain-containing protein n=1... [more]
A0A662XIN0_9STRA1.670e-1451.35Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig23545contigH-paniculata_contig23545:998..3077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.6
Seed ortholog evalue7.9e-17
Seed eggNOG ortholog2880.D8LEJ0
KEGG koko:K11136,ko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons3
Model size420
Cds size420
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig23545.6358.1prot_H-paniculata_contig23545.6358.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig23545 998..3077 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929669.084894-CDS-H-paniculata_contig23545:997..11171622929669.084894-CDS-H-paniculata_contig23545:997..1117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23545 998..1117 -
1691480959.5783775-CDS-H-paniculata_contig23545:997..11171691480959.5783775-CDS-H-paniculata_contig23545:997..1117Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23545 998..1117 -
1622929669.1019952-CDS-H-paniculata_contig23545:1747..19031622929669.1019952-CDS-H-paniculata_contig23545:1747..1903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23545 1748..1903 -
1691480959.5984094-CDS-H-paniculata_contig23545:1747..19031691480959.5984094-CDS-H-paniculata_contig23545:1747..1903Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23545 1748..1903 -
1622929669.1157818-CDS-H-paniculata_contig23545:2933..30771622929669.1157818-CDS-H-paniculata_contig23545:2933..3077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23545 2934..3077 -
1691480959.6064053-CDS-H-paniculata_contig23545:2933..30771691480959.6064053-CDS-H-paniculata_contig23545:2933..3077Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig23545 2934..3077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig23545.6358.1

>prot_H-paniculata_contig23545.6358.1 ID=prot_H-paniculata_contig23545.6358.1|Name=mRNA_H-paniculata_contig23545.6358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
APGTGAALAAVAAAAGARWRGGETTGVKCRALSGSEWYDQQAFRALNQAL
GRCIRHIHDYGVVCLVDSRIAGKTHNLAKWMRNYVSEFDFEAEMQQTIRQ
LFEVAPAYVQGRKDEAARMRAASAEERRRRQNQGVTITVE
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mRNA from alignment at H-paniculata_contig23545:998..3077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig23545.6358.1 ID=mRNA_H-paniculata_contig23545.6358.1|Name=mRNA_H-paniculata_contig23545.6358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2080bp|location=Sequence derived from alignment at H-paniculata_contig23545:998..3077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCCGGGGACGGGCGCTGCGTTAGCGGCGGTGGCGGCGGCCGCGGGAGC
AAGGTGGCGGGGTGGAGAGACGACGGGGGTGAAGTGTCGGGCGTTGAGTG
GATCCGAGTGGTACGACCAACAGGCGTTTCGGGCGCTCAACCAGGTATGG
CTCGAAATGCGTGTCAAAGAAATACAGCCTTGTGTGGATAGTCGGTTGAG
TGCTCGATGATGGATAGATGGAAAGATGGATGGCCCCACGACAGGAGTGC
GAGTTTTGTTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTTACTGTAT
GGTGTATTATTTCATGTAACTACGATTTTCAGGCTAAATTAGCTCAGCAT
GCTTTTATATGTGTGTGTGTGTTTTGTGTCTTCAACCCCAACACAAATGC
ACACCTGGTTCCCTAACGGGGTACGTTGTTATGGTAGTTTGAGATAATTA
GAACCTCGACTACTCCAATGATTTTCGTTTCATCACCAACTGTTCTTCTC
GTCCCCTCTTGATGATCTAGATTTGCTGCTAAGTGTACACAACTAAAGTC
TAAGGCCAGCTGCATAATCTAAAGGTAGGTACAATGGAGCTATTGTATTA
GCGTTTAGAGCTTAGTTCTGTAACTGTTGCAAGTGGGTTGACGTAGGAAC
GAGAATACCGGTCGGTGAAAGGCGGGGGCTATTTCAGGGGTAGGTTTGAT
TGGTTCATGTGAAAAGTATTTCATGCTTACGTACAGTACATACGAGAGAT
AGTAGTACTCCCTTGTGAAGATTGTCGTAGCCCCTGTCATGCCTGGTCGA
AGAGGTTGGAGAAATCCTGGTACTTACCATGTAAGTAGAACCCTGTTCCT
CTGCCAAGCAGCATATCCAAATATCCGTCCACCCCCCCCCCGCCCGCGCA
CCACACTCCACATCCATTGTATCGATAACGTGTTGGGCTAGAAGGGAGGA
AGGAAGGGGAAAGGGATGGATGGCCGTAGGGAGCTAAAGAGCTGAAGACG
TTGTGTCGTCGTTCAACTTTGTTCAAGTCTTGAATTGCGACGGCAACATG
GATTCAAATCTCTGATGAAGCCACACAAGTATTGATCTCTGACGGACACG
TCTCAAGCACTTGTCATTTTGTCCTCTGTTTGGTTGGGTCAACCGACCTC
GCTTTGGTCTGGATTTCTTTTCAGGCCCTGGGGCGGTGTATTCGGCACAT
TCACGACTACGGCGTAGTCTGTCTTGTAGACAGTCGCATAGCGGGAAAGA
CGCATAATCTGGCCAAGTGGATGAGGAACTACGTGAGCGAATTCGACTTC
GAGGCAGAGATGCAGCAGACGATACGTCAGGTTCGGTGCTTTTAGCAAGG
GGTCAATCGCCCGGTCGCACTCTCTGCGATGCGCTGTGTTTGTCCCGCAA
GGCCTTTGAGTGGAGACGTATTTTTATCTTGGTATGAATGAGCCAAGGAC
GCGCGCGTGTTGTCATATATGCGGACAGTAATTGTTTCCTCTCTAAACTG
CTTGCGTCTGTAGTTTTTCGAGGTGCTACTACTGGGCCAGTTCACCTGCT
GTTTTGTGTGGTTGCTCAGTTAGACCGTCTCTGGTTGTTCGCGCCACCAC
GCGCTGCTGCGAAGCTAGCCTGTCACTGCTACATTGTGCTCTGCTATGAT
GAGGACGTGTGCATATGCATTATCGGTAGCGTTTTCTCTGCCGATAAAGT
GTGGAATGTTTTTCTGCCTACACCATCGCGTAACTCAAAACGAGTGCCAG
TTCGACACAAAATGCACAAGCATATCACACCCGGACTCCCCCCGAATCCT
ACCCCTACCCAAACCCTTTACTCCGCCCCCTGGTGCAATGCGGGTCCCTT
CTGGTTGCTATCAAAACCGCAAAAGCAATATCCTCCTTTGTTCCGCCTCT
ATCAGCTTGCTCCCCACACACACCCTGTCTTGCAATATGTTACCGTTCAC
GTACGCACAGCTATTCGAGGTCGCCCCGGCCTACGTACAGGGCCGCAAAG
ACGAAGCAGCTAGAATGAGGGCGGCTTCAGCAGAAGAGCGACGGCGGCGA
CAAAATCAAGGCGTAACGATTACGGTGGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig23545:998..3077-

>mRNA_H-paniculata_contig23545.6358.1 ID=mRNA_H-paniculata_contig23545.6358.1|Name=mRNA_H-paniculata_contig23545.6358.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig23545:998..3077- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGCCGGGGACGGGCGCTGCGTTAGCGGCGGTGGCGGCGGCCGCGGGAGC
AAGGTGGCGGGGTGGAGAGACGACGGGGGTGAAGTGTCGGGCGTTGAGTG
GATCCGAGTGGTACGACCAACAGGCGTTTCGGGCGCTCAACCAGGCGCCG
GGGACGGGCGCTGCGTTAGCGGCGGTGGCGGCGGCCGCGGGAGCAAGGTG
GCGGGGTGGAGAGACGACGGGGGTGAAGTGTCGGGCGTTGAGTGGATCCG
AGTGGTACGACCAACAGGCGTTTCGGGCGCTCAACCAGGCCCTGGGGCGG
TGTATTCGGCACATTCACGACTACGGCGTAGTCTGTCTTGTAGACAGTCG
CATAGCGGGAAAGACGCATAATCTGGCCAAGTGGATGAGGAACTACGTGA
GCGAATTCGACTTCGAGGCAGAGATGCAGCAGACGATACGTCAGGCCCTG
GGGCGGTGTATTCGGCACATTCACGACTACGGCGTAGTCTGTCTTGTAGA
CAGTCGCATAGCGGGAAAGACGCATAATCTGGCCAAGTGGATGAGGAACT
ACGTGAGCGAATTCGACTTCGAGGCAGAGATGCAGCAGACGATACGTCAG
CTATTCGAGGTCGCCCCGGCCTACGTACAGGGCCGCAAAGACGAAGCAGC
TAGAATGAGGGCGGCTTCAGCAGAAGAGCGACGGCGGCGACAAAATCAAG
GCGTAACGATTACGGTGGAACTATTCGAGGTCGCCCCGGCCTACGTACAG
GGCCGCAAAGACGAAGCAGCTAGAATGAGGGCGGCTTCAGCAGAAGAGCG
ACGGCGGCGACAAAATCAAGGCGTAACGATTACGGTGGAA
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