mRNA_H-paniculata_contig2354.6356.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2354.6356.1
Unique NamemRNA_H-paniculata_contig2354.6356.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2354.6356.1 vs. uniprot
Match: A0A6H5KUW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUW2_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.970e-20
Identity = 59/103 (57.28%), Postives = 66/103 (64.08%), Query Frame = 3 
Query:  186 RSKNKPWGEGTASRS---RQSAAVPASFQGPTPAASSAAPRRPSAGGK----KAPGAVPPEKKDLLYAQLVDMGFATKDCDRAFKEVGYDEIDPVLNWLFSNA 473
            R K KPWG+ TA+      + A VPA+  GPTPAAS                K P A+  EK+D LYAQLVDMGFA  DCD+AFKEVGY EIDPVLNWLFSNA
Sbjct: 1746 RPKKKPWGDATAAAGDGGAKKATVPANLMGPTPAASXXXXXXXXXXXXXXXXKVPAALSAEKRDQLYAQLVDMGFAIADCDKAFKEVGY-EIDPVLNWLFSNA 1847
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2354.6356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUW2_9PHAE3.970e-2057.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2354contigH-paniculata_contig2354:10139..11667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size655
Cds size453
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2354.6356.1prot_H-paniculata_contig2354.6356.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2354 10139..11465 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.8290114-CDS-H-paniculata_contig2354:10138..102001622929668.8290114-CDS-H-paniculata_contig2354:10138..10200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2354 10139..10200 +
1691480959.491568-CDS-H-paniculata_contig2354:10138..102001691480959.491568-CDS-H-paniculata_contig2354:10138..10200Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2354 10139..10200 +
1622929668.851722-CDS-H-paniculata_contig2354:10704..110261622929668.851722-CDS-H-paniculata_contig2354:10704..11026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2354 10705..11026 +
1691480959.502254-CDS-H-paniculata_contig2354:10704..110261691480959.502254-CDS-H-paniculata_contig2354:10704..11026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2354 10705..11026 +
1622929668.863682-CDS-H-paniculata_contig2354:11396..114651622929668.863682-CDS-H-paniculata_contig2354:11396..11465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2354 11397..11465 +
1691480959.511409-CDS-H-paniculata_contig2354:11396..114651691480959.511409-CDS-H-paniculata_contig2354:11396..11465Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2354 11397..11465 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.9399037-UTR-H-paniculata_contig2354:11465..116671622929668.9399037-UTR-H-paniculata_contig2354:11465..11667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2354 11466..11667 +
1691480959.5205512-UTR-H-paniculata_contig2354:11465..116671691480959.5205512-UTR-H-paniculata_contig2354:11465..11667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2354 11466..11667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2354.6356.1

>prot_H-paniculata_contig2354.6356.1 ID=prot_H-paniculata_contig2354.6356.1|Name=mRNA_H-paniculata_contig2354.6356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp
MGRRRREGGARVRAGVTTAARLPLPHLPLLVGGHLLPPTTTILPGGRAPA
AAALVAEGREEVDRKTSLGEKVPHRGLGSRRPSRRPSRGLRLPLRRRRRD
VPVQAARRRLGRSRQRRRICCTRSWWTWASRRRTVTVPSRRLATTKLILY
*
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mRNA from alignment at H-paniculata_contig2354:10139..11667+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2354.6356.1 ID=mRNA_H-paniculata_contig2354.6356.1|Name=mRNA_H-paniculata_contig2354.6356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1529bp|location=Sequence derived from alignment at H-paniculata_contig2354:10139..11667+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCAGGCGGCGCAGGGAAGGGGGGGCGAGGGTTCGGGCTGGGGTAAC
GACGGCGGCCAGGTGTGCCGTTGATTTTTTGTTGTCATTATTTTGTGCGT
GCGTAGTGTGGCGTGTCAAGGTTTGCTTACATTACGTGTCCATGAGGAGC
TGGCGTGCGCTGTGTAAGTAGTGCGTGTATTTGGTGCGTAGTATTGAGAA
CGGGTGGTCTGGTCTTTCTTATGTTTGTATAATGTGCTTCGTCTAGTGGA
TTCTATTCCATCAACATTGCTCTGGTGGTTGGTCGATTGTTTTTATCTAT
GTATTTGCTCTTTTTGTCAAGTTGAAGACGGCTCATATGACAGGGTTAAG
ATCAATCAAAACCCTTCTAAGGGTTCAGAAACGAATTAAATATAGCCCCA
AACCCCTTTATTTTATCAAGTAAAACAAGAGAGGATTTTGCTCTCGTTTA
GATATCGGACATTCTGAACCTCACCGCAAAATCCCCCAAAACGATATACC
TGTCACCTGTCAACCTAAACGACGCTCAACCTTTCCCGACCCCCCCCCCG
ACCTGGCTACCAACAGACTACCGCTGCCGCACCTTCCTCTTCTGGTTGGG
GGGCACCTCCTGCCACCAACAACGACAATTCTTCCGGGTGGACGAGCGCC
GGCGGCGGCCGCTCTGGTGGCGGAAGGGCGCGAGGAGGTCGATCGAAAAA
CAAGCCTTGGGGAGAAGGTACCGCATCGCGGTCTAGGCAGTCGGCGGCCG
TCCCGGCGTCCTTCCAGGGGCCTACGCCTGCCGCTTCGTCGGCGGCGCCG
CGACGTCCCAGTGCAGGCGGCAAGAAGGCGCCTGGGGCGGTCCCGCCAGA
GAAGAAGGATTTGTTGTACGCGCAGCTGGTGGACATGGGTAAGATAGGCA
GAAGATTGTTTGAGCTTGCTCACTGGCTGGCTTGCTTGCATGTATGCTTG
ATCACAAAAGAAAGGACTCAATCACTCGCACTCTGGGCGTATTTGCCAGC
CCCTTTTTGCATGAATGTATTTGCTAGGGTCACCTGGTGTTGATTTGACT
CGGATTCGCTTGCCCATTCGTCTCCATTTTTTCATGCTAACCTTCTTTGA
CGTGACAGTTGTGTCATCTTTTTCAAGAATATATAAAGTCACACTTAGTG
AACGTATTCTGCTCTCTCGCAGCCATGTTTCATTTCACGCTAGCCTGCAC
CTGTGACGCTGTAGTTGCTGACGTGTACTTGCCCCTGTTTTTGTTTTTTT
GCTTTTAGGCTTCGCGACGAAGGACTGTGACCGTGCCTTCAAGGAGGTTG
GCTACGACGAAATTGATCCTGTATTGAACTGGTTGTTTTCCAATGCCACT
ACATGAAAATTGGAACAGAAACACAAAAGCTATTACACTCGCATGTGTGT
CGTCGTCCACCGGTTGAAATGTCGAGGCGTTTTCACTTGCGGGTTGATGC
GTAGGCAGGATTTCGGATGTCCTGACAGCAGCGAGTTGTAAGGAAGGGAG
GGAAAGGGGCGAAATATGTGGCTTCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2354:10139..11667+

>mRNA_H-paniculata_contig2354.6356.1 ID=mRNA_H-paniculata_contig2354.6356.1|Name=mRNA_H-paniculata_contig2354.6356.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig2354:10139..11667+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCAGGCGGCGCAGGGAAGGGGGGGCGAGGGTTCGGGCTGGGGTAAC
GACGGCGGCCAGATGGGCAGGCGGCGCAGGGAAGGGGGGGCGAGGGTTCG
GGCTGGGGTAACGACGGCGGCCAGACTACCGCTGCCGCACCTTCCTCTTC
TGGTTGGGGGGCACCTCCTGCCACCAACAACGACAATTCTTCCGGGTGGA
CGAGCGCCGGCGGCGGCCGCTCTGGTGGCGGAAGGGCGCGAGGAGGTCGA
TCGAAAAACAAGCCTTGGGGAGAAGGTACCGCATCGCGGTCTAGGCAGTC
GGCGGCCGTCCCGGCGTCCTTCCAGGGGCCTACGCCTGCCGCTTCGTCGG
CGGCGCCGCGACGTCCCAGTGCAGGCGGCAAGAAGGCGCCTGGGGCGGTC
CCGCCAGAGAAGAAGGATTTGTTGTACGCGCAGCTGGTGGACATGGACTA
CCGCTGCCGCACCTTCCTCTTCTGGTTGGGGGGCACCTCCTGCCACCAAC
AACGACAATTCTTCCGGGTGGACGAGCGCCGGCGGCGGCCGCTCTGGTGG
CGGAAGGGCGCGAGGAGGTCGATCGAAAAACAAGCCTTGGGGAGAAGGTA
CCGCATCGCGGTCTAGGCAGTCGGCGGCCGTCCCGGCGTCCTTCCAGGGG
CCTACGCCTGCCGCTTCGTCGGCGGCGCCGCGACGTCCCAGTGCAGGCGG
CAAGAAGGCGCCTGGGGCGGTCCCGCCAGAGAAGAAGGATTTGTTGTACG
CGCAGCTGGTGGACATGGGCTTCGCGACGAAGGACTGTGACCGTGCCTTC
AAGGAGGTTGGCTACGACGAAATTGATCCTGTATTGAGCTTCGCGACGAA
GGACTGTGACCGTGCCTTCAAGGAGGTTGGCTACGACGAAATTGATCCTG
TATTGA
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