mRNA_H-paniculata_contig2353.6355.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2353.6355.1
Unique NamemRNA_H-paniculata_contig2353.6355.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2353.6355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2353contigH-paniculata_contig2353:13555..14504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size951
Cds size948
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929668.7803154-CDS-H-paniculata_contig2353:13554..145021622929668.7803154-CDS-H-paniculata_contig2353:13554..14502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2353 13555..14502 +
1691480959.4802198-CDS-H-paniculata_contig2353:13554..145021691480959.4802198-CDS-H-paniculata_contig2353:13554..14502Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2353 13555..14502 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2353.6355.1prot_H-paniculata_contig2353.6355.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2353 13555..14502 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2353.6355.1

>prot_H-paniculata_contig2353.6355.1 ID=prot_H-paniculata_contig2353.6355.1|Name=mRNA_H-paniculata_contig2353.6355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=316bp
RRGGIWTTTPKSSAGSMRQRVPVSPVNQSPKATETPASGTAVFPSPLLEI
GTVKALQDSFTVNSATNSSSGNSNNRINKRSMNKRATDAVAAAAMATGAA
VGIQNSSVFFSATDKSQSNRQPDKRSATDSRRGLMPKRSRSPARVPVGTT
AAASSSSPSREQVLRSDVRDIDGNGIWADDSNEDSDSVGKIAAAAAAEAE
EAVYSSSLSLSAADVAPVGDSRGNPRENRNYGTVVHISSLISPLYETPAP
LAPASPNAGVGSAALTPAEIERICAAVAIGRKETGLCSVSSVGAREDIEN
SRSDNSSRRAVAATAV
back to top

mRNA from alignment at H-paniculata_contig2353:13555..14504+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2353.6355.1 ID=mRNA_H-paniculata_contig2353.6355.1|Name=mRNA_H-paniculata_contig2353.6355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=950bp|location=Sequence derived from alignment at H-paniculata_contig2353:13555..14504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAGAGGAGGCATCTGGACGACGACGCCGAAATCGTCGGCGGGATCGAT
GCGGCAACGAGTTCCTGTGTCACCCGTAAACCAGAGTCCCAAAGCGACGG
AGACGCCGGCCTCCGGAACGGCGGTGTTCCCATCACCACTGCTCGAGATC
GGTACCGTTAAGGCGCTGCAGGACAGCTTCACGGTCAACAGCGCCACGAA
CAGTAGCAGTGGCAACAGCAACAACAGAATCAACAAGCGCAGTATGAACA
AGAGGGCGACGGACGCGGTGGCGGCGGCGGCGATGGCGACGGGGGCAGCA
GTAGGGATCCAGAACTCCTCTGTCTTTTTCTCGGCGACGGACAAATCGCA
GTCAAACCGGCAGCCAGACAAGCGGTCGGCAACGGACTCCCGCCGGGGAC
TGATGCCAAAGCGATCGCGTTCCCCCGCCCGAGTTCCGGTCGGTACCACC
GCAGCAGCTTCTTCCAGTAGCCCGAGTCGCGAGCAGGTGCTGCGGAGCGA
TGTTAGGGACATCGATGGCAACGGGATCTGGGCGGACGACAGCAACGAGG
ATAGCGATAGCGTCGGCAAGATAGCAGCAGCTGCGGCGGCGGAAGCGGAA
GAAGCGGTCTACTCTTCTTCCCTTTCTCTTTCCGCTGCGGACGTTGCGCC
CGTGGGAGACAGCCGGGGAAACCCGAGGGAAAATAGGAATTACGGGACAG
TGGTGCACATTTCGTCGCTGATTTCGCCCCTTTACGAAACGCCTGCCCCC
CTTGCACCGGCGTCGCCGAACGCGGGCGTTGGTAGCGCAGCGTTAACACC
CGCGGAAATTGAACGGATATGCGCCGCTGTTGCTATAGGACGGAAAGAGA
CCGGGCTTTGCAGTGTTTCCAGTGTTGGTGCGCGGGAAGACATCGAGAAC
AGCCGGAGTGATAATAGCAGTCGCCGGGCGGTAGCGGCAACGGCGGTGGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2353:13555..14504+

>mRNA_H-paniculata_contig2353.6355.1 ID=mRNA_H-paniculata_contig2353.6355.1|Name=mRNA_H-paniculata_contig2353.6355.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1896bp|location=Sequence derived from alignment at H-paniculata_contig2353:13555..14504+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAGAGGAGGCATCTGGACGACGACGCCGAAATCGTCGGCGGGATCGAT
GCGGCAACGAGTTCCTGTGTCACCCGTAAACCAGAGTCCCAAAGCGACGG
AGACGCCGGCCTCCGGAACGGCGGTGTTCCCATCACCACTGCTCGAGATC
GGTACCGTTAAGGCGCTGCAGGACAGCTTCACGGTCAACAGCGCCACGAA
CAGTAGCAGTGGCAACAGCAACAACAGAATCAACAAGCGCAGTATGAACA
AGAGGGCGACGGACGCGGTGGCGGCGGCGGCGATGGCGACGGGGGCAGCA
GTAGGGATCCAGAACTCCTCTGTCTTTTTCTCGGCGACGGACAAATCGCA
GTCAAACCGGCAGCCAGACAAGCGGTCGGCAACGGACTCCCGCCGGGGAC
TGATGCCAAAGCGATCGCGTTCCCCCGCCCGAGTTCCGGTCGGTACCACC
GCAGCAGCTTCTTCCAGTAGCCCGAGTCGCGAGCAGGTGCTGCGGAGCGA
TGTTAGGGACATCGATGGCAACGGGATCTGGGCGGACGACAGCAACGAGG
ATAGCGATAGCGTCGGCAAGATAGCAGCAGCTGCGGCGGCGGAAGCGGAA
GAAGCGGTCTACTCTTCTTCCCTTTCTCTTTCCGCTGCGGACGTTGCGCC
CGTGGGAGACAGCCGGGGAAACCCGAGGGAAAATAGGAATTACGGGACAG
TGGTGCACATTTCGTCGCTGATTTCGCCCCTTTACGAAACGCCTGCCCCC
CTTGCACCGGCGTCGCCGAACGCGGGCGTTGGTAGCGCAGCGTTAACACC
CGCGGAAATTGAACGGATATGCGCCGCTGTTGCTATAGGACGGAAAGAGA
CCGGGCTTTGCAGTGTTTCCAGTGTTGGTGCGCGGGAAGACATCGAGAAC
AGCCGGAGTGATAATAGCAGTCGCCGGGCGGTAGCGGCAACGGCGGTGAG
AAGAGGAGGCATCTGGACGACGACGCCGAAATCGTCGGCGGGATCGATGC
GGCAACGAGTTCCTGTGTCACCCGTAAACCAGAGTCCCAAAGCGACGGAG
ACGCCGGCCTCCGGAACGGCGGTGTTCCCATCACCACTGCTCGAGATCGG
TACCGTTAAGGCGCTGCAGGACAGCTTCACGGTCAACAGCGCCACGAACA
GTAGCAGTGGCAACAGCAACAACAGAATCAACAAGCGCAGTATGAACAAG
AGGGCGACGGACGCGGTGGCGGCGGCGGCGATGGCGACGGGGGCAGCAGT
AGGGATCCAGAACTCCTCTGTCTTTTTCTCGGCGACGGACAAATCGCAGT
CAAACCGGCAGCCAGACAAGCGGTCGGCAACGGACTCCCGCCGGGGACTG
ATGCCAAAGCGATCGCGTTCCCCCGCCCGAGTTCCGGTCGGTACCACCGC
AGCAGCTTCTTCCAGTAGCCCGAGTCGCGAGCAGGTGCTGCGGAGCGATG
TTAGGGACATCGATGGCAACGGGATCTGGGCGGACGACAGCAACGAGGAT
AGCGATAGCGTCGGCAAGATAGCAGCAGCTGCGGCGGCGGAAGCGGAAGA
AGCGGTCTACTCTTCTTCCCTTTCTCTTTCCGCTGCGGACGTTGCGCCCG
TGGGAGACAGCCGGGGAAACCCGAGGGAAAATAGGAATTACGGGACAGTG
GTGCACATTTCGTCGCTGATTTCGCCCCTTTACGAAACGCCTGCCCCCCT
TGCACCGGCGTCGCCGAACGCGGGCGTTGGTAGCGCAGCGTTAACACCCG
CGGAAATTGAACGGATATGCGCCGCTGTTGCTATAGGACGGAAAGAGACC
GGGCTTTGCAGTGTTTCCAGTGTTGGTGCGCGGGAAGACATCGAGAACAG
CCGGAGTGATAATAGCAGTCGCCGGGCGGTAGCGGCAACGGCGGTG
back to top